File: ArrayColumnBase.h

package info (click to toggle)
casacore 3.5.0-2
  • links: PTS, VCS
  • area: main
  • in suites:
  • size: 51,680 kB
  • sloc: cpp: 462,815; fortran: 16,372; ansic: 7,403; yacc: 4,626; lex: 2,340; sh: 1,786; python: 629; perl: 531; sed: 499; csh: 34; makefile: 31
file content (420 lines) | stat: -rw-r--r-- 18,044 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
//# ArrayColumnBase.h: base class for access to an array table column
//# Copyright (C) 2013
//# Associated Universities, Inc. Washington DC, USA.
//#
//# This library is free software; you can redistribute it and/or modify it
//# under the terms of the GNU Library General Public License as published by
//# the Free Software Foundation; either version 2 of the License, or (at your
//# option) any later version.
//#
//# This library is distributed in the hope that it will be useful, but WITHOUT
//# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
//# FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Library General Public
//# License for more details.
//#
//# You should have received a copy of the GNU Library General Public License
//# along with this library; if not, write to the Free Software Foundation,
//# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
//#
//# Correspondence concerning AIPS++ should be addressed as follows:
//#        Internet email: aips2-request@nrao.edu.
//#        Postal address: AIPS++ Project Office
//#                        National Radio Astronomy Observatory
//#                        520 Edgemont Road
//#                        Charlottesville, VA 22903-2475 USA
//#
//# $Id: ArrayColumn.h 21298 2012-12-07 14:53:03Z gervandiepen $

#ifndef TABLES_ARRAYCOLUMNBASE_H
#define TABLES_ARRAYCOLUMNBASE_H


//# Includes
#include <casacore/casa/aips.h>
#include <casacore/tables/Tables/TableColumn.h>
#include <casacore/casa/Arrays/Vector.h>

namespace casacore { //# NAMESPACE CASACORE - BEGIN

//# Forward Declarations
class BaseSlicesFunctor;
class RefRows;
class ColumnSlicer;
class IPosition;
class Slice;
class Slicer;
class String;


// <summary>
// Read and write access to an array table column with arbitrary data type
// </summary>

// <use visibility=export>

// <reviewed reviewer="dschieb" date="1994/08/10" tests="none">
// </reviewed>

// <prerequisite>
//   <li> Table
//   <li> TableColumn
// </prerequisite>

// <etymology>
// ArrayColumn<T> gives read and write access to an column in a table
// containing an array with data type T.
// </etymology>

// <synopsis> 
// ArrayColumnBase is the base class of the templated class ArrayColumn
// which allows readonly access to a column containing arrays with an
// arbitrary data type. It can handle direct as well as indirect arrays.
//
// All get and put functions are implemented in this base class as
// non-templated functions. Type-specific operations are done by means
// of virtual functions in the Array classes.
// </synopsis>
  
// <example>
// See module <linkto module="Tables#open">Tables</linkto>.
// </example>


  class ArrayColumnBase : public TableColumn
  {
  public:
    // The default constructor creates a null object, i.e. it
    // does not reference a table column.
    ArrayColumnBase();

    // Construct for the given column in the given table.
    ArrayColumnBase (const Table&, const String& columnName);

    // Construct from the given table column.
    // This constructor is useful if first a table column was constructed,
    // its type is determined and thereafter used to construct the
    // correct column object.
    ArrayColumnBase (const TableColumn& column);

    // Copy constructor (reference semantics).
    ArrayColumnBase (const ArrayColumnBase&);

    ~ArrayColumnBase();

    // Assignment uses reference semantics, thus works the same
    // as function reference.
    ArrayColumnBase& operator= (const ArrayColumnBase&);

    // Change the reference to another column.
    // This is in fact an assignment operator with reference semantics.
    // It removes the reference to the current column and creates
    // a reference to the column referenced in the other object.
    // It will handle null objects correctly.
    void reference (const ArrayColumnBase&);

    // Get the #dimensions of an array in a particular cell.
    // If the cell does not contain an array, 0 is returned.
    // Use the function isDefined to test if the cell contains an array.
    uInt ndim (rownr_t rownr) const
      { TABLECOLUMNCHECKROW(rownr); return baseColPtr_p->ndim (rownr); }

    // Get the shape of an array in a particular cell.
    // If the cell does not contain an array, a 0-dim shape is returned.
    // Use the function isDefined to test if the cell contains an array.
    IPosition shape (rownr_t rownr) const
      { TABLECOLUMNCHECKROW(rownr); return baseColPtr_p->shape (rownr); }

    // Counterparts of the acbGet() functions below not checking shapes, etc.
    // They are faster and can be used for performance reasons if one
    // knows for sure that the arguments are correct.
    // E.g., they are used internally in virtual column engines.
    // <group>
    void baseGet (rownr_t rownr, ArrayBase& array) const
      { baseColPtr_p->getArray (rownr, array); }
    void baseGetSlice (rownr_t rownr, const Slicer& arraySection,
                       ArrayBase& array) const
      { baseColPtr_p->getSlice (rownr, arraySection, array); }
    // </group>

    // Get the array value in a particular cell (i.e. table row).
    // The row numbers count from 0 until #rows-1.
    void acbGet (rownr_t rownr, ArrayBase& array, Bool resize) const;

    // Get a slice of an N-dimensional array in a particular cell
    // (i.e. table row).
    // The row numbers count from 0 until #rows-1.
    // The dimensionality of the slice must match the dimensionality
    // of the table array and the slice definition should not exceed
    // the shape of the table array.
    void acbGetSlice (rownr_t rownr, const Slicer& arraySection, ArrayBase& array,
                      Bool resize) const;

    // Get an irregular slice of an N-dimensional array in a particular cell
    // (i.e. table row)  as given by the vectors of Slice objects.
    // The outer vector represents the array axes.
    // A missing or empty axis means the entire axis.
    // The inner vector represents the slices to take for each axis.
    // For example, to get slices from 2-dim arrays:
    // <srcblock>
    // Vector<Vector<Slice> > slices(2);      // 2-dim
    // slices[1].resize (3);                  // 3 slices in 2nd dim
    // slices[1][0] = Slice(100,20);
    // slices[1][1] = Slice(200,18);
    // slices[1][2] = Slice(538,30,2);
    // // Get data. Vector of first axis is empty, thus entire axis is read.
    // Array<Complex> data = dataCol.getColumn (slices);
    // </srcblock>
    // If the column contains n-dim arrays, the resulting array is (n+1)-dim.
    // with the last dimension representing the number of rows and the
    // other dimensions representing the shape of the slice.
    // The arrays in the column must have the same shape in all cells.
    void acbGetSlice (rownr_t rownr,
                      const Vector<Vector<Slice> >& arraySlices,
                      ArrayBase& arr, Bool resize) const;

    // Get the array of all values in a column.
    // If the column contains n-dim arrays, the resulting array is (n+1)-dim
    // with the last dimension representing the number of rows.
    // The arrays in the column must have the same shape in all cells.
    void acbGetColumn (ArrayBase& array, Bool resize) const;

    // Get regular slices from all arrays in the column.
    // If the column contains n-dim arrays, the resulting array is (n+1)-dim.
    // with the last dimension representing the number of rows and the
    // other dimensions representing the shape of the slice.
    // The arrays in the column must have the same shape in all cells.
    void acbGetColumn (const Slicer& arraySection, ArrayBase& array,
                       Bool resize) const;

    // Get irregular slices from all arrays in the column as given by the
    // vectors of Slice objects. The outer vector represents the array axes.
    // A missing or empty axis means the entire axis.
    // The inner vector represents the slices to take for each axis.
    // For example, to get slices from 2-dim arrays:
    // <srcblock>
    // Vector<Vector<Slice> > slices(2);      // 2-dim
    // slices[1].resize (3);                  // 3 slices in 2nd dim
    // slices[1][0] = Slice(100,20);
    // slices[1][1] = Slice(200,18);
    // slices[1][2] = Slice(538,30,2);
    // // Get data. Vector of first axis is empty, thus entire axis is read.
    // Array<Complex> data = dataCol.getColumn (slices);
    // </srcblock>
    // If the column contains n-dim arrays, the resulting array is (n+1)-dim.
    // with the last dimension representing the number of rows and the
    // other dimensions representing the shape of the slice.
    // The arrays in the column must have the same shape in all cells.
    void acbGetColumn (const Vector<Vector<Slice> >& arraySection,
                       ArrayBase& array,
                       Bool resize) const;

    // Get the array of some values in a column.
    // The Slicer object can be used to specify start, end (or length),
    // and stride of the rows to get.
    // If the column contains n-dim arrays, the resulting array is (n+1)-dim
    // with the last dimension representing the number of rows in the slicer.
    // The arrays in the column must have the same shape in all those cells.
    void acbGetColumnRange (const Slicer& rowRange, ArrayBase& arr,
                            Bool resize) const;
    void acbGetColumnCells (const RefRows& rownrs, ArrayBase& arr,
                            Bool resize) const;

    // Get slices from some arrays in a column.
    // The first Slicer object can be used to specify start, end (or length),
    // and stride of the rows to get. The second Slicer object can be
    // used to specify the slice to take from each array.
    // If the column contains n-dim arrays, the resulting array is (n+1)-dim
    // with the last dimension representing the number of rows in the slicer.
    // The arrays in the column must have the same shape in all those cells.
    // <group>
    void acbGetColumnRange (const Slicer& rowRange,
                            const Slicer& arraySection, ArrayBase& arr,
                            Bool resize) const;
    void acbGetColumnCells (const RefRows& rownrs,
                            const Slicer& arraySection, ArrayBase& arr,
                            Bool resize) const;
    // </group>

    // Get various slices from the given rows.
    void acbGetColumnCells (const RefRows& rows,
                            const ColumnSlicer& columnSlicer,
                            ArrayBase& destination,
                            Bool resize) const;

    // Set the shape of the array in the given row.
    // Setting the shape is needed if the array is put in slices,
    // otherwise the table system would not know the shape.
    // <group>
    void setShape (rownr_t rownr, const IPosition& shape);

    // Try to store the array in a tiled way using the given tile shape.
    void setShape (rownr_t rownr, const IPosition& shape,
		   const IPosition& tileShape);
    // </group>

    // Counterparts of the acbPut() functions below not checking shapes, etc.
    // They are faster and can be used for performance reasons if one
    // knows for sure that the arguments are correct.
    // E.g., they are used internally in virtual column engines.
    // <group>
    void basePut (rownr_t rownr, const ArrayBase& array)
      { baseColPtr_p->putArray (rownr, array); }
    void basePutSlice (rownr_t rownr, const Slicer& arraySection,
                       const ArrayBase& array)
      { baseColPtr_p->putSlice (rownr, arraySection, array); }
    // </group>

    // Put the array in a particular cell (i.e. table row).
    // The row numbers count from 0 until #rows-1.
    // If the shape of the table array in that cell has not already been
    // defined, it will be defined implicitly.
    void acbPut (rownr_t rownr, const ArrayBase& array);

    // Put into a slice of an N-dimensional array in a particular cell.
    // The row numbers count from 0 until #rows-1.
    // The shape of the table array must have been defined.
    // The dimensionality of the slice must match the dimensionality
    // of the table array and the slice definition should not exceed
    // the shape of the table array.
    void acbPutSlice (rownr_t rownr, const Slicer& arraySection,
                      const ArrayBase& array);

    void acbPutSlice (rownr_t rownr, const Vector<Vector<Slice> >& arraySlices,
                      const ArrayBase& arr);

    // Put the array of all values in the column.
    // If the column contains n-dim arrays, the source array must be (n+1)-dim
    // with the last dimension representing the number of rows.
    void acbPutColumn (const ArrayBase& array);

    // Put into subsections of the table arrays in the entire column.
    // If the column contains n-dim arrays, the source array is (n+1)-dim
    // with the last dimension representing the number of rows and
    // other dimensions representing the shape of the slice.
    // The dimensionality of the slice must match the dimensionality
    // of the table array, thus must be n-dim. Also the slice definition
    // should not exceed the shape of the table arrays.
    void acbPutColumn (const Slicer& arraySection, const ArrayBase& array);

    void acbPutColumn (const Vector<Vector<Slice> >& arraySlices,
                       const ArrayBase& arr);

    // Put the array of some values in the column.
    // The Slicer object can be used to specify start, end (or length),
    // and stride of the rows to put.
    // If the column contains n-dim arrays, the source array must be (n+1)-dim
    // with the last dimension representing the number of rows in the slicer.
    // <group>
    void acbPutColumnRange (const Slicer& rowRange, const ArrayBase& arr);
    void acbPutColumnCells (const RefRows& rownrs, const ArrayBase& arr);
    // </group>

    // Put into subsection of the table arrays in some rows of the column.
    // The first Slicer object can be used to specify start, end (or length),
    // and stride of the rows to put. The second Slicer object can be
    // used to specify the slice to take from each array.
    // If the column contains n-dim arrays, the source array must be (n+1)-dim
    // with the last dimension representing the number of rows in the slicer.
    // <group>
    void acbPutColumnRange (const Slicer& rowRange,
                            const Slicer& arraySection, const ArrayBase& arr);
    void acbPutColumnCells (const RefRows& rownrs,
                            const Slicer& arraySection, const ArrayBase& arr);
    // </group>

    // Put various slices in the given rows.
    // <group>
    void acbPutColumnCells (const RefRows& rows,
                            const Vector<Vector<Slice> >& arraySlices,
                            const ArrayBase& source);
    void acbPutColumnCells (const RefRows& rows,
                            const ColumnSlicer& columnSlicer,
                            const ArrayBase& source);
    // </group>

    // Put the same value in all cells of the column.
    void acbFillColumn (const ArrayBase& value);

    // Put the contents of that column into this one.
    void acbPutColumn (const ArrayColumnBase& that);

    // Adapt the shape of the array if possible. If the array is empty or
    // if <src>resize=True</src>, the array is resized if needed.
    // Otherwise checkShape is used to throw an exception if not conforming.
    void adaptShape (const IPosition& shp,
                     ArrayBase& arr, Bool resize,
                     Int64 rownr, const String& where) const;

    // Throw an exception if the array does not have the expected shape.
    // However, False is returned if noSlicing and canChangeShape_p are True
    // (meaning no slices are put and the shape of a full row can change).
    // The column name is made part of the error message, as well as the rownr
    // if it is not negative (meaning a put of a column).
    Bool checkShape (const IPosition& expShape, const IPosition& arrShape,
                     Bool noSlicing, Int64 rownr, const String& where) const;

    // A common function used by all functions that can get or put irregular
    // array slices. The functor performs the get or put operation.
    void handleSlices (const Vector<Vector<Slice> >& slices,
                       BaseSlicesFunctor& functor,
                       const Slicer& slicer,
                       const ArrayBase& array) const;
  };




// <synopsis>
// ColumnSlicer is used in one of the ArrayColumn::getColumnCells functions.
// That method takes a potentially complex/ selection of data out of a
// column cell (e.g., multiple slices along each axis) and then puts them
// into a selection of a destination array.
// This is most easily represented as a set of source,destination slicers
// where one is applied to the cell and the other to the destination array.  
// </synopsis>
class ColumnSlicer
{
public:

  // Construct the object.
  // It takes over the pointers to the Slicer objects and deletes them
  // in the destructor.
  // The shape parameter is the shape of the destination array excluding
  // the row axis.  
  ColumnSlicer (const IPosition& shape,
                const Vector<Slicer*>& dataSlicers,
                const Vector<Slicer*>& destinationSlicers);

  // The destructor deletes all Slicer objects.
  ~ColumnSlicer();

  // Get the data slicers.
  const Vector<Slicer*>& getDataSlicers() const
    { return dataSlicers_p; }

  // Get the desintation slicers.
  const Vector<Slicer*>& getDestinationSlicers() const
    { return destinationSlicers_p; }

  // Get the shape.
  const IPosition& shape() const
    { return shape_p; }

private:
  // Delete all Slicer objects.
  void freeSlicers();

  // Check if the slicers match the array shape.
  String validateParameters() const; 

  //# Data members.
  Vector<Slicer*> dataSlicers_p;
  Vector<Slicer*> destinationSlicers_p;
  IPosition shape_p;
};



} //# NAMESPACE CASACORE - END

#endif