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//# PycArrayNP.cc: Convert a Casacore Array to a Python numpy array
//# Copyright (C) 2006
//# Associated Universities, Inc. Washington DC, USA.
//#
//# This library is free software; you can redistribute it and/or modify it
//# under the terms of the GNU Library General Public License as published by
//# the Free Software Foundation; either version 2 of the License, or (at your
//# option) any later version.
//#
//# This library is distributed in the hope that it will be useful, but WITHOUT
//# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
//# FITNESS FOR A PARTICULAR PURPOSE. See the GNU Library General Public
//# License for more details.
//#
//# You should have received a copy of the GNU Library General Public License
//# along with this library; if not, write to the Free Software Foundation,
//# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
//#
//# Correspondence concerning AIPS++ should be addressed as follows:
//# Internet email: casa-feedback@nrao.edu.
//# Postal address: AIPS++ Project Office
//# National Radio Astronomy Observatory
//# 520 Edgemont Road
//# Charlottesville, VA 22903-2475 USA
#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
#include <casacore/python/Converters/PycArrayNP.h>
#include <casacore/casa/Arrays/ArrayMath.h>
#include <casacore/casa/Utilities/Assert.h>
#include <casacore/casa/Exceptions/Error.h>
#include <casacore/casa/vector.h>
#include <boost/python/dict.hpp>
#define PYC_USE_PYARRAY "numpy"
namespace casacore { namespace python { namespace numpy {
Bool importArray()
{
// numpy has diferent versions of import_array (from version 1.0.1 on).
// Therefore import_array1 is used.
import_array1(True);
return True;
}
Array<String> ArrayCopyStr_toArray (const IPosition& shape,
void* data, size_t slen)
{
// This code converts from a numpy String array.
// The longest string determines the length of each value.
// They are padded with zeroes if shorter.
Array<String> arr(shape);
String* to = arr.data();
const char* src = static_cast<const char*>(data);
size_t nr = arr.size();
for (size_t i=0; i<nr; ++i) {
if (src[slen-1] == 0) {
to[i] = String(src);
} else {
to[i] = String(src, slen);
}
src += slen;
}
return arr;
}
Array<String> ArrayCopyUnicode_toArray (const IPosition& shape,
void* data, size_t slen)
{
// This code converts from a numpy Unicode array (which
// is encoded as UTF32).
// The longest string determines the length of each value.
// They are padded with zeroes if shorter.
// slen is the byte stride.
//
// This is likely to be slow because each string is converted to UTF-8
// via the Python C API.
Array<String> arr(shape);
String* to = arr.data();
const char* src = static_cast<const char*>(data);
size_t nr = arr.size();
for (size_t i=0; i<nr; ++i) {
// TODO: what to do in failure cases?
boost::python::object unicode(boost::python::handle<>(
PyUnicode_DecodeUTF32(src, slen, NULL, NULL)));
if (unicode) {
boost::python::object utf8(boost::python::handle<>(
PyUnicode_AsUTF8String(unicode.ptr())));
if (utf8)
to[i] = String(PyBytes_AS_STRING(utf8.ptr()));
}
src += slen;
}
return arr;
}
//# Code to deal with numpy array scalars (i.e. a value returned
//# by taking an element from a numpy array).
// Check if the object is an array scalar and return its type.
Bool PycArrayScalarCheck (PyObject* obj_ptr, int& type)
{
if (!PyArray_API) {
if (!isImported()) return False;
loadAPI();
}
// No scalar if array scalar nor 0-dim array.
if (! PyArray_CheckScalar(obj_ptr)) {
return False;
}
// See if the object is a 0-dim array.
Bool is0dim = PyArray_Check(obj_ptr);
const int ntypes = 13;
// Define them in order of expected usage.
int types[ntypes] = {
NPY_INT32,
NPY_INT64,
NPY_FLOAT32,
NPY_FLOAT64,
NPY_COMPLEX64,
NPY_COMPLEX128,
NPY_UINT32,
NPY_UINT64,
NPY_BOOL,
NPY_INT16,
NPY_UINT16,
NPY_INT8,
NPY_UINT8};
for (int i=0; i<ntypes; ++i) {
if (is0dim) {
if (types[i] == PyArray_TYPE((const PyArrayObject *)obj_ptr)) {
type = types[i];
return True;
}
} else {
if (obj_ptr->ob_type == (PyTypeObject*)PyArray_TypeObjectFromType(types[i])) {
type = types[i];
return True;
}
}
}
return False;
}
DataType PycArrayScalarType (PyObject* obj_ptr)
{
int type;
if (! PycArrayScalarCheck(obj_ptr, type)) {
return TpOther;
}
switch (type) {
case NPY_BOOL:
return TpBool;
case NPY_INT8:
case NPY_UINT8:
case NPY_INT16:
case NPY_UINT16:
case NPY_INT32:
case NPY_UINT32:
return TpInt;
case NPY_INT64:
case NPY_UINT64:
return TpInt64;
case NPY_FLOAT32:
case NPY_FLOAT64:
return TpDouble;
case NPY_COMPLEX64:
case NPY_COMPLEX128:
return TpDComplex;
default:
return TpOther;
}
}
ValueHolder makeScalar (PyObject* obj_ptr, int type)
{
if (PyArray_Check(obj_ptr)) {
PyArrayObject* obj = (PyArrayObject*)obj_ptr;
switch (type) {
case NPY_BOOL:
return ValueHolder(*(::npy_bool*)(PyArray_DATA(obj)) != 0);
case NPY_INT8:
return ValueHolder(int(*(::npy_int8*)(PyArray_DATA(obj))));
case NPY_UINT8:
return ValueHolder(uint(*(::npy_uint8*)(PyArray_DATA(obj))));
case NPY_INT16:
return ValueHolder(int(*(::npy_int16*)(PyArray_DATA(obj))));
case NPY_UINT16:
return ValueHolder(uint(*(::npy_uint16*)(PyArray_DATA(obj))));
case NPY_INT32:
return ValueHolder(int(*(::npy_int32*)(PyArray_DATA(obj))));
case NPY_UINT32:
return ValueHolder(uint(*(::npy_uint32*)(PyArray_DATA(obj))));
case NPY_INT64:
return ValueHolder(Int64(*(::npy_int64*)(PyArray_DATA(obj))));
case NPY_UINT64:
return ValueHolder(Int64(*(::npy_uint64*)(PyArray_DATA(obj))));
case NPY_FLOAT32:
return ValueHolder(float(*(::npy_float32*)(PyArray_DATA(obj))));
case NPY_FLOAT64:
return ValueHolder(double(*(::npy_float64*)(PyArray_DATA(obj))));
case NPY_COMPLEX64:
return ValueHolder(*(Complex*)(PyArray_DATA(obj)));
case NPY_COMPLEX128:
return ValueHolder(*(DComplex*)(PyArray_DATA(obj)));
default:
break;
}
} else {
char buffer[32];
PyArray_ScalarAsCtype(obj_ptr, buffer);
switch (type) {
case NPY_BOOL:
{
::npy_bool* ptr = (::npy_bool* )buffer;
return ValueHolder(*ptr != 0);
}
case NPY_INT8:
{
::npy_int8* ptr = (::npy_int8*)buffer;
return ValueHolder(Short(*ptr));
}
case NPY_UINT8:
{
::npy_uint8* ptr = (::npy_uint8*)buffer;
return ValueHolder(uShort(*ptr));
}
case NPY_INT16:
{
::npy_int16* ptr = (::npy_int16*)buffer;
return ValueHolder(Short(*ptr));
}
case NPY_UINT16:
{
::npy_uint16* ptr = (::npy_uint16*)buffer;
return ValueHolder(uShort(*ptr));
}
case NPY_INT32:
{
::npy_int32* ptr = (::npy_int32*)buffer;
return ValueHolder(Int(*ptr));
}
case NPY_UINT32:
{
::npy_uint32* ptr = (::npy_uint32*)buffer;
return ValueHolder(uInt(*ptr));
}
case NPY_INT64:
{
::npy_int64* ptr = (::npy_int64*)buffer;
return ValueHolder(Int64(*ptr));
}
case NPY_UINT64:
{
::npy_uint64* ptr = (::npy_uint64*)buffer;
return ValueHolder(Int64(*ptr));
}
case NPY_FLOAT32:
{
::npy_float32* ptr = (::npy_float32*)buffer;
return ValueHolder(float(*ptr));
}
case NPY_FLOAT64:
{
::npy_float64* ptr = (::npy_float64*)buffer;
return ValueHolder(double(*ptr));
}
case NPY_COMPLEX64:
{
Complex* ptr = (Complex*)buffer;
return ValueHolder(*ptr);
}
case NPY_COMPLEX128:
{
DComplex* ptr = (DComplex*)buffer;
return ValueHolder(*ptr);
}
default:
break;
}
}
throw AipsError("invalid data type");
}
void register_convert_arrayscalars()
{
// Register as casa types.
// A type like ssize_t maps to Int or Long (depending on machine).
array_scalar_from_python<Bool>();
array_scalar_from_python<Char>();
array_scalar_from_python<uChar>();
array_scalar_from_python<Short>();
array_scalar_from_python<uShort>();
array_scalar_from_python<Int>();
array_scalar_from_python<uInt>();
array_scalar_from_python<Long>();
array_scalar_from_python<uLong>();
array_scalar_from_python<Int64>();
array_scalar_from_python<uInt64>();
array_scalar_from_python<Float>();
array_scalar_from_python<Double>();
array_scalar_from_python<Complex>();
array_scalar_from_python<DComplex>();
}
#include <casacore/python/Converters/PycArrayComCC.h>
template <typename T>
boost::python::object makePyArrayObject (casacore::Array<T> const& arr)
{
// Load the API if needed.
if (!PyArray_API) loadAPI();
// Swap axes, because Casacore has row minor and Python row major order.
// A Python array needs at least 1 dimension, otherwise it's a scalar.
int nd = arr.ndim();
vector<npy_intp> newshp(1, 0);
if (nd == 0) {
nd = 1;
} else {
newshp.resize (nd);
const IPosition& shp = arr.shape();
for (int i=0; i<nd; i++) {
newshp[i] = shp[nd-i-1];
}
}
// Create the array from the shape.
// This gives a warning because a function pointer is converted
// to a data pointer.
// A union could be used as in e.g. DynLib.cc, but numpy
// declarations are too complicated for it.
PyArrayObject* po = (PyArrayObject*)
(PyArray_SimpleNew(nd, &(newshp[0]), TypeConvTraits<T>::pyType()));
// Copy the data to numarray.
if (arr.size() > 0) {
casacore::Bool deleteIt;
const T* src = arr.getStorage(deleteIt);
ArrayCopy<T>::toPy (PyArray_DATA(po), src, arr.size());
arr.freeStorage(src, deleteIt);
}
// Return the python array.
return boost::python::object(boost::python::handle<>((PyObject*)po));
}
}}}
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