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//# Adios2StManColumn.cc: The Column of the ADIOS2 Storage Manager
//# Copyright (C) 2018
//# Associated Universities, Inc. Washington DC, USA.
//#
//# This library is free software; you can redistribute it and/or modify it
//# under the terms of the GNU Library General Public License as published by
//# the Free Software Foundation; either version 2 of the License, or (at your
//# option) any later version.
//#
//# This library is distributed in the hope that it will be useful, but WITHOUT
//# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
//# FITNESS FOR A PARTICULAR PURPOSE. See the GNU Library General Public
//# License for more details.
//#
//# You should have received a copy of the GNU Library General Public License
//# along with this library; if not, write to the Free Software Foundation,
//# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
//#
//# Correspondence concerning AIPS++ should be addressed as follows:
//# Internet email: casa-feedback@nrao.edu.
//# Postal address: AIPS++ Project Office
//# National Radio Astronomy Observatory
//# 520 Edgemont Road
//# Charlottesville, VA 22903-2475 USA
#include "Adios2StManColumn.h"
namespace casacore
{
Adios2StManColumn::Adios2StManColumn(
Adios2StMan::impl *aParent,
int aDataType,
String aColName,
std::shared_ptr<adios2::IO> aAdiosIO)
:StManColumnBase(aDataType),
itsStManPtr(aParent),
itsColumnName(aColName),
itsAdiosIO(aAdiosIO)
{
}
String Adios2StManColumn::getColumnName()
{
return itsColumnName;
}
void Adios2StManColumn::setShapeColumn(const IPosition &aShape)
{
isShapeFixed = true;
itsCasaShape = aShape;
itsAdiosShape.resize(aShape.size() + 1);
itsAdiosStart.resize(aShape.size() + 1);
itsAdiosCount.resize(aShape.size() + 1);
for (size_t i = 0; i < aShape.size(); ++i)
{
itsAdiosShape[i + 1] = aShape[aShape.size() - i - 1];
itsAdiosCount[i + 1] = aShape[aShape.size() - i - 1];
itsAdiosStart[i + 1] = 0;
}
}
IPosition Adios2StManColumn::shape(rownr_t aRowNr)
{
if(isShapeFixed)
{
return itsCasaShape;
}
else
{
auto shape = itsCasaShapes.find(aRowNr);
if(shape != itsCasaShapes.end())
{
return shape->second;
}
else
{
return IPosition();
}
}
}
Bool Adios2StManColumn::canChangeShape() const
{
return !isShapeFixed;
}
void Adios2StManColumn::setShape (rownr_t aRowNr, const IPosition& aShape)
{
itsCasaShapes[aRowNr] = aShape;
}
void Adios2StManColumn::scalarToSelection(rownr_t rownr)
{
itsAdiosStart[0] = rownr;
itsAdiosCount[0] = 1;
}
void Adios2StManColumn::scalarColumnVToSelection()
{
itsAdiosStart[0] = 0;
itsAdiosCount[0] = itsStManPtr->getNrRows();
}
void Adios2StManColumn::arrayVToSelection(rownr_t rownr)
{
if(isShapeFixed)
{
itsAdiosStart[0] = rownr;
itsAdiosCount[0] = 1;
for (size_t i = 1; i < itsAdiosShape.size(); ++i)
{
itsAdiosStart[i] = 0;
itsAdiosCount[i] = itsAdiosShape[i];
}
}
else
{
auto casaShape = itsCasaShapes.find(rownr);
if(casaShape != itsCasaShapes.end())
{
itsAdiosShape.resize(casaShape->second.size() + 1);
itsAdiosStart.resize(casaShape->second.size() + 1);
itsAdiosCount.resize(casaShape->second.size() + 1);
itsAdiosStart[0] = rownr;
itsAdiosCount[0] = 1;
for (size_t i = 0; i < casaShape->second.size(); ++i)
{
itsAdiosShape[i + 1] = casaShape->second[casaShape->second.size() - i - 1];
itsAdiosCount[i + 1] = casaShape->second[casaShape->second.size() - i - 1];
itsAdiosStart[i + 1] = 0;
}
}
else
{
cerr << "Shape of Row " << rownr << " has not been set" << endl;
}
}
}
void Adios2StManColumn::arrayColumnVToSelection()
{
itsAdiosStart[0] = 0;
itsAdiosCount[0] = itsStManPtr->getNrRows();
for (size_t i = 1; i < itsAdiosShape.size(); ++i)
{
itsAdiosStart[i] = 0;
itsAdiosCount[i] = itsAdiosShape[i];
}
}
void Adios2StManColumn::scalarColumnCellsVToSelection(const RefRows &rows)
{
RefRowsSliceIter iter(rows);
auto row_start = iter.sliceStart();
auto row_end = iter.sliceEnd();
iter.next();
if (!iter.pastEnd()) {
throw std::runtime_error("Adios2StManColumn::scalarColumnCellsVToSelection supports single slices");
}
itsAdiosStart[0] = row_start;
itsAdiosCount[0] = row_end - row_start + 1;
for (size_t i = 1; i < itsAdiosShape.size(); ++i)
{
itsAdiosStart[i] = 0;
itsAdiosCount[i] = itsAdiosShape[i];
}
}
void Adios2StManColumn::sliceVToSelection(rownr_t rownr, const Slicer &ns)
{
columnSliceCellsVToSelection(rownr, 1, ns);
}
void Adios2StManColumn::columnSliceVToSelection(const Slicer &ns)
{
columnSliceCellsVToSelection(0, itsStManPtr->getNrRows(), ns);
}
void Adios2StManColumn::columnSliceCellsVToSelection(const RefRows &rows, const Slicer &ns)
{
RefRowsSliceIter iter(rows);
auto row_start = iter.sliceStart();
auto row_end = iter.sliceEnd();
iter.next();
if (!iter.pastEnd()) {
throw std::runtime_error("Adios2StManColumn::columnSliceCellsVToSelection supports single slices");
}
columnSliceCellsVToSelection(row_start, row_end - row_start + 1, ns);
}
void Adios2StManColumn::columnSliceCellsVToSelection(rownr_t row_start, rownr_t row_count, const Slicer &ns)
{
itsAdiosStart[0] = row_start;
itsAdiosCount[0] = row_count;
for (size_t i = 1; i < itsAdiosShape.size(); ++i)
{
itsAdiosStart[i] = ns.start()(ns.ndim() - i);
itsAdiosCount[i] = ns.length()(ns.ndim() - i);
}
}
void Adios2StManColumn::putArrayV(rownr_t rownr, const ArrayBase& data)
{
arrayVToSelection(rownr);
toAdios(&data);
}
void Adios2StManColumn::getArrayV(rownr_t rownr, ArrayBase& data)
{
arrayVToSelection(rownr);
fromAdios(&data);
}
void Adios2StManColumn::putScalar(rownr_t rownr, const void *dataPtr)
{
scalarToSelection(rownr);
toAdios(dataPtr);
}
void Adios2StManColumn::getScalar(rownr_t rownr, void *data)
{
scalarToSelection(rownr);
fromAdios(data);
}
void Adios2StManColumn::putScalarColumnV(const ArrayBase &data)
{
scalarColumnVToSelection();
toAdios(&data);
}
void Adios2StManColumn::getScalarColumnV(ArrayBase &data)
{
scalarColumnVToSelection();
fromAdios(&data);
}
void Adios2StManColumn::getScalarColumnCellsV(const RefRows &rownrs, ArrayBase& data)
{
scalarColumnCellsVToSelection(rownrs);
fromAdios(&data);
}
void Adios2StManColumn::putScalarColumnCellsV(const RefRows &rownrs, const ArrayBase& data)
{
scalarColumnCellsVToSelection(rownrs);
toAdios(&data);
}
void Adios2StManColumn::putArrayColumnCellsV (const RefRows& rownrs, const ArrayBase& data)
{
if(rownrs.isSliced())
{
rownrs.convert();
}
Bool deleteIt;
const void *dataPtr = data.getVStorage(deleteIt);
itsAdiosCount[0] = 1;
for (size_t i = 1; i < itsAdiosShape.size(); ++i)
{
itsAdiosStart[i] = 0;
itsAdiosCount[i] = itsAdiosShape[i];
}
for(uInt i = 0; i < rownrs.rowVector().size(); ++i)
{
itsAdiosStart[0] = rownrs.rowVector()[i];
toAdios(dataPtr, i * itsCasaShape.nelements());
}
data.freeVStorage(dataPtr, deleteIt);
}
void Adios2StManColumn::getArrayColumnCellsV (const RefRows& rownrs, ArrayBase &data)
{
if(rownrs.isSliced())
{
rownrs.convert();
}
Bool deleteIt;
void *dataPtr = data.getVStorage(deleteIt);
itsAdiosCount[0] = 1;
for (size_t i = 1; i < itsAdiosShape.size(); ++i)
{
itsAdiosStart[i] = 0;
itsAdiosCount[i] = itsAdiosShape[i];
}
for(uInt i = 0; i < rownrs.rowVector().size(); ++i)
{
itsAdiosStart[0] = rownrs.rowVector()[i];
fromAdios(dataPtr, i * itsCasaShape.nelements());
}
data.putVStorage(dataPtr, deleteIt);
}
void Adios2StManColumn::getSliceV(rownr_t aRowNr, const Slicer &ns, ArrayBase& data)
{
sliceVToSelection(aRowNr, ns);
fromAdios(&data);
}
void Adios2StManColumn::putSliceV(rownr_t aRowNr, const Slicer &ns, const ArrayBase& data)
{
sliceVToSelection(aRowNr, ns);
toAdios(&data);
}
void Adios2StManColumn::getArrayColumnV(ArrayBase& data)
{
arrayColumnVToSelection();
fromAdios(&data);
}
void Adios2StManColumn::putArrayColumnV(const ArrayBase& data)
{
arrayColumnVToSelection();
toAdios(&data);
}
void Adios2StManColumn::putColumnSliceV(const Slicer &ns, const ArrayBase& data)
{
columnSliceVToSelection(ns);
toAdios(&data);
}
void Adios2StManColumn::getColumnSliceV(const Slicer &ns, ArrayBase& data)
{
columnSliceVToSelection(ns);
fromAdios(&data);
}
void Adios2StManColumn::getColumnSliceCellsV(const RefRows& rownrs,
const Slicer& slicer, ArrayBase& data)
{
columnSliceCellsVToSelection(rownrs, slicer);
fromAdios(&data);
}
void Adios2StManColumn::putColumnSliceCellsV(const RefRows& rownrs,
const Slicer& slicer, const ArrayBase& data)
{
columnSliceCellsVToSelection(rownrs, slicer);
toAdios(&data);
}
#define DEFINE_GETPUT(T) \
void Adios2StManColumn::put ## T(rownr_t rownr, const T *dataPtr) \
{ \
putScalar(rownr, dataPtr); \
} \
\
void Adios2StManColumn::get ## T(rownr_t rownr, T *dataPtr) \
{ \
getScalar(rownr, dataPtr); \
}
DEFINE_GETPUT(Bool)
DEFINE_GETPUT(uChar)
DEFINE_GETPUT(Short)
DEFINE_GETPUT(uShort)
DEFINE_GETPUT(Int)
DEFINE_GETPUT(uInt)
DEFINE_GETPUT(float)
DEFINE_GETPUT(double)
DEFINE_GETPUT(Complex)
DEFINE_GETPUT(DComplex)
DEFINE_GETPUT(Int64)
#undef DEFINE_GETPUT
// string
template<>
void Adios2StManColumnT<std::string>::create(std::shared_ptr<adios2::Engine> aAdiosEngine, char /*aOpenMode*/)
{
itsAdiosEngine = aAdiosEngine;
}
void Adios2StManColumn::putString(rownr_t rownr, const String *dataPtr)
{
std::string variableName = static_cast<std::string>(itsColumnName) + std::to_string(rownr);
adios2::Variable<std::string> v = itsAdiosIO->InquireVariable<std::string>(variableName);
if (!v)
{
v = itsAdiosIO->DefineVariable<std::string>(variableName);
}
itsAdiosEngine->Put(v, reinterpret_cast<const std::string *>(dataPtr), adios2::Mode::Sync);
}
void Adios2StManColumn::getString(rownr_t rownr, String *dataPtr)
{
std::string variableName = static_cast<std::string>(itsColumnName) + std::to_string(rownr);
adios2::Variable<std::string> v = itsAdiosIO->InquireVariable<std::string>(variableName);
if (v)
{
itsAdiosEngine->Get(v, reinterpret_cast<std::string *>(dataPtr), adios2::Mode::Sync);
}
}
void Adios2StManColumnString::putArrayV(rownr_t rownr, const ArrayBase& data)
{
String combined;
Bool deleteIt;
auto *arrayPtr = reinterpret_cast<const Array<String> *>(&data);
const String *dataPtr = arrayPtr->getStorage(deleteIt);
for(auto &i : *arrayPtr)
{
combined = combined + i + itsStringArrayBarrier;
}
arrayPtr->freeStorage(dataPtr, deleteIt);
putString(rownr, &combined);
}
void Adios2StManColumnString::getArrayV(rownr_t rownr, ArrayBase& data)
{
String combined;
getString(rownr, &combined);
Bool deleteIt;
auto *arrayPtr = reinterpret_cast<Array<String> *>(&data);
String *dataPtr = arrayPtr->getStorage(deleteIt);
size_t pos = 0;
for(auto &i : *arrayPtr)
{
size_t found = combined.find(itsStringArrayBarrier, pos);
if(found != std::string::npos)
{
i = combined.substr(pos, found - pos);
pos = found + itsStringArrayBarrier.length();
}
}
arrayPtr->putStorage(dataPtr, deleteIt);
}
void Adios2StManColumnString::getSliceV(rownr_t /*aRowNr*/, const Slicer &/*ns*/, ArrayBase &/*data*/)
{
throw std::runtime_error("Not implemented yet");
}
void Adios2StManColumnString::putSliceV(rownr_t /*aRowNr*/, const Slicer &/*ns*/, const ArrayBase &/*data*/)
{
throw std::runtime_error("Not implemented yet");
}
void Adios2StManColumnString::getColumnSliceV(const Slicer &/*ns*/, ArrayBase &/*data*/)
{
throw std::runtime_error("Not implemented yet");
}
void Adios2StManColumnString::putColumnSliceV(const Slicer &/*ns*/, const ArrayBase &/*data*/)
{
throw std::runtime_error("Not implemented yet");
}
void Adios2StManColumnString::getColumnSliceCellsV(const RefRows& /*rownrs*/, const Slicer& /*slicer*/, ArrayBase& /*data*/)
{
throw std::runtime_error("Not implemented yet");
}
void Adios2StManColumnString::putColumnSliceCellsV(const RefRows& /*rownrs*/, const Slicer& /*slicer*/, const ArrayBase& /*data*/)
{
throw std::runtime_error("Not implemented yet");
}
} // namespace casacore
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