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# coding=utf-8
# coding=utf-8
# This file was automatically generated by SWIG (http://www.swig.org).
# Version 4.0.2
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.
from sys import version_info as _swig_python_version_info
if _swig_python_version_info < (2, 7, 0):
raise RuntimeError("Python 2.7 or later required")
# Import the low-level C/C++ module
if __package__ or "." in __name__:
from . import _py2cbf
else:
import _py2cbf
try:
import builtins as __builtin__
except ImportError:
import __builtin__
def _swig_repr(self):
try:
strthis = "proxy of " + self.this.__repr__()
except __builtin__.Exception:
strthis = ""
return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
def _swig_setattr_nondynamic_instance_variable(set):
def set_instance_attr(self, name, value):
if name == "thisown":
self.this.own(value)
elif name == "this":
set(self, name, value)
elif hasattr(self, name) and isinstance(getattr(type(self), name), property):
set(self, name, value)
else:
raise AttributeError("You cannot add instance attributes to %s" % self)
return set_instance_attr
def _swig_setattr_nondynamic_class_variable(set):
def set_class_attr(cls, name, value):
if hasattr(cls, name) and not isinstance(getattr(cls, name), property):
set(cls, name, value)
else:
raise AttributeError("You cannot add class attributes to %s" % cls)
return set_class_attr
def _swig_add_metaclass(metaclass):
"""Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass"""
def wrapper(cls):
return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy())
return wrapper
class _SwigNonDynamicMeta(type):
"""Meta class to enforce nondynamic attributes (no new attributes) for a class"""
__setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
__author__ = "Jon Wright <wright@esrf.fr>"
__date__ = "14 Dec 2005"
__version__ = "CBFlib 0.9"
__credits__ = """Paul Ellis and Herbert Bernstein for the excellent CBFlib!"""
__doc__=""" pycbf - python bindings to the CBFlib library
A library for reading and writing ImageCIF and CBF files
which store area detector images for crystallography.
This work is a derivative of the CBFlib version 0.7.7 library
by Paul J. Ellis of Stanford Synchrotron Radiation Laboratory
and Herbert J. Bernstein of Bernstein + Sons
See:
http://www.bernstein-plus-sons.com/software/CBF/
Licensing is GPL based, see:
http://www.bernstein-plus-sons.com/software/CBF/doc/CBFlib_NOTICES.html
These bindings were automatically generated by SWIG, and the
input to SWIG was automatically generated by a python script.
We very strongly recommend you do not attempt to edit them
by hand!
Copyright (C) 2007 Jonathan Wright
ESRF, Grenoble, France
email: wright@esrf.fr
Revised, August 2010 Herbert J. Bernstein
Add defines from CBFlib 0.9.1
"""
class doubleArray(object):
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
__repr__ = _swig_repr
def __init__(self, nelements):
_py2cbf.doubleArray_swiginit(self, _py2cbf.new_doubleArray(nelements))
__swig_destroy__ = _py2cbf.delete_doubleArray
def __getitem__(self, index):
return _py2cbf.doubleArray___getitem__(self, index)
def __setitem__(self, index, value):
return _py2cbf.doubleArray___setitem__(self, index, value)
def cast(self):
return _py2cbf.doubleArray_cast(self)
@staticmethod
def frompointer(t):
return _py2cbf.doubleArray_frompointer(t)
# Register doubleArray in _pycbf:
_py2cbf.doubleArray_swigregister(doubleArray)
def doubleArray_frompointer(t):
return _py2cbf.doubleArray_frompointer(t)
class intArray(object):
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
__repr__ = _swig_repr
def __init__(self, nelements):
_py2cbf.intArray_swiginit(self, _py2cbf.new_intArray(nelements))
__swig_destroy__ = _py2cbf.delete_intArray
def __getitem__(self, index):
return _py2cbf.intArray___getitem__(self, index)
def __setitem__(self, index, value):
return _py2cbf.intArray___setitem__(self, index, value)
def cast(self):
return _py2cbf.intArray_cast(self)
@staticmethod
def frompointer(t):
return _py2cbf.intArray_frompointer(t)
# Register intArray in _pycbf:
_py2cbf.intArray_swigregister(intArray)
def intArray_frompointer(t):
return _py2cbf.intArray_frompointer(t)
class shortArray(object):
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
__repr__ = _swig_repr
def __init__(self, nelements):
_py2cbf.shortArray_swiginit(self, _py2cbf.new_shortArray(nelements))
__swig_destroy__ = _py2cbf.delete_shortArray
def __getitem__(self, index):
return _py2cbf.shortArray___getitem__(self, index)
def __setitem__(self, index, value):
return _py2cbf.shortArray___setitem__(self, index, value)
def cast(self):
return _py2cbf.shortArray_cast(self)
@staticmethod
def frompointer(t):
return _py2cbf.shortArray_frompointer(t)
# Register shortArray in _pycbf:
_py2cbf.shortArray_swigregister(shortArray)
def shortArray_frompointer(t):
return _py2cbf.shortArray_frompointer(t)
class longArray(object):
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
__repr__ = _swig_repr
def __init__(self, nelements):
_py2cbf.longArray_swiginit(self, _py2cbf.new_longArray(nelements))
__swig_destroy__ = _py2cbf.delete_longArray
def __getitem__(self, index):
return _py2cbf.longArray___getitem__(self, index)
def __setitem__(self, index, value):
return _py2cbf.longArray___setitem__(self, index, value)
def cast(self):
return _py2cbf.longArray_cast(self)
@staticmethod
def frompointer(t):
return _py2cbf.longArray_frompointer(t)
# Register longArray in _pycbf:
_py2cbf.longArray_swigregister(longArray)
def longArray_frompointer(t):
return _py2cbf.longArray_frompointer(t)
CBF_INTEGER = _py2cbf.CBF_INTEGER
CBF_FLOAT = _py2cbf.CBF_FLOAT
CBF_CANONICAL = _py2cbf.CBF_CANONICAL
CBF_PACKED = _py2cbf.CBF_PACKED
CBF_PACKED_V2 = _py2cbf.CBF_PACKED_V2
CBF_BYTE_OFFSET = _py2cbf.CBF_BYTE_OFFSET
CBF_PREDICTOR = _py2cbf.CBF_PREDICTOR
CBF_NONE = _py2cbf.CBF_NONE
CBF_COMPRESSION_MASK = _py2cbf.CBF_COMPRESSION_MASK
CBF_FLAG_MASK = _py2cbf.CBF_FLAG_MASK
CBF_UNCORRELATED_SECTIONS = _py2cbf.CBF_UNCORRELATED_SECTIONS
CBF_FLAT_IMAGE = _py2cbf.CBF_FLAT_IMAGE
CBF_NO_EXPAND = _py2cbf.CBF_NO_EXPAND
PLAIN_HEADERS = _py2cbf.PLAIN_HEADERS
MIME_HEADERS = _py2cbf.MIME_HEADERS
MSG_NODIGEST = _py2cbf.MSG_NODIGEST
MSG_DIGEST = _py2cbf.MSG_DIGEST
MSG_DIGESTNOW = _py2cbf.MSG_DIGESTNOW
MSG_DIGESTWARN = _py2cbf.MSG_DIGESTWARN
PAD_1K = _py2cbf.PAD_1K
PAD_2K = _py2cbf.PAD_2K
PAD_4K = _py2cbf.PAD_4K
CBF_PARSE_BRC = _py2cbf.CBF_PARSE_BRC
CBF_PARSE_PRN = _py2cbf.CBF_PARSE_PRN
CBF_PARSE_BKT = _py2cbf.CBF_PARSE_BKT
CBF_PARSE_BRACKETS = _py2cbf.CBF_PARSE_BRACKETS
CBF_PARSE_TQ = _py2cbf.CBF_PARSE_TQ
CBF_PARSE_CIF2_DELIMS = _py2cbf.CBF_PARSE_CIF2_DELIMS
CBF_PARSE_DDLm = _py2cbf.CBF_PARSE_DDLm
CBF_PARSE_CIF2 = _py2cbf.CBF_PARSE_CIF2
CBF_PARSE_DEFINES = _py2cbf.CBF_PARSE_DEFINES
CBF_PARSE_WIDE = _py2cbf.CBF_PARSE_WIDE
CBF_PARSE_UTF8 = _py2cbf.CBF_PARSE_UTF8
HDR_DEFAULT = _py2cbf.HDR_DEFAULT
MIME_NOHEADERS = _py2cbf.MIME_NOHEADERS
CBF = _py2cbf.CBF
CIF = _py2cbf.CIF
ENC_NONE = _py2cbf.ENC_NONE
ENC_BASE64 = _py2cbf.ENC_BASE64
ENC_BASE32K = _py2cbf.ENC_BASE32K
ENC_QP = _py2cbf.ENC_QP
ENC_BASE10 = _py2cbf.ENC_BASE10
ENC_BASE16 = _py2cbf.ENC_BASE16
ENC_BASE8 = _py2cbf.ENC_BASE8
ENC_FORWARD = _py2cbf.ENC_FORWARD
ENC_BACKWARD = _py2cbf.ENC_BACKWARD
ENC_CRTERM = _py2cbf.ENC_CRTERM
ENC_LFTERM = _py2cbf.ENC_LFTERM
ENC_DEFAULT = _py2cbf.ENC_DEFAULT
def get_local_integer_byte_order():
r"""
Returns : char **bo,int *bolen
*args :
C prototype: int cbf_get_local_integer_byte_order (char ** byte_order);
CBFLib documentation:
DESCRIPTION
cbf_get_local_integer_byte_order returns the byte order of integers
on the machine on which the API is being run in the form of a
character string returned as the value pointed to by byte_order.
cbf_get_local_real_byte_order returns the byte order of reals on the
machine on which the API is being run in the form of a character
string returned as the value pointed to by byte_order.
cbf_get_local_real_format returns the format of floats on the machine
on which the API is being run in the form of a character string
returned as the value pointed to by real_format. The strings returned
must not be modified in any way.
The values returned in byte_order may be the strings "little_endian
" or "big-endian ". The values returned in real_format may be the
strings "ieee 754-1985 " or "other ". Additional values may be
returned by future versions of the API.
ARGUMENTS
byte_order pointer to the returned string real_format pointer to
the returned string
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.get_local_integer_byte_order()
def compute_cell_volume(cell):
r"""
Returns : Float volume
*args : double cell[6]
C prototype: int cbf_compute_cell_volume ( double cell[6], double *volume );
CBFLib documentation:
DESCRIPTION
cbf_compute_cell_volume sets *volume to point to the volume of the
unit cell computed from the double values in cell[0:2] for the cell
edge lengths a, b and c in Ångstroms and the double values given in
cell[3:5] for the cell angles α, β and γ in degrees.
ARGUMENTS
cell Pointer to the array of 6 doubles giving the cell
parameters. volume Pointer to the doubles for cell volume.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.compute_cell_volume(cell)
def get_local_real_format():
r"""
Returns : char **rf,int *rflen
*args :
C prototype: int cbf_get_local_real_format (char ** real_format );
CBFLib documentation:
DESCRIPTION
cbf_get_local_integer_byte_order returns the byte order of integers
on the machine on which the API is being run in the form of a
character string returned as the value pointed to by byte_order.
cbf_get_local_real_byte_order returns the byte order of reals on the
machine on which the API is being run in the form of a character
string returned as the value pointed to by byte_order.
cbf_get_local_real_format returns the format of floats on the machine
on which the API is being run in the form of a character string
returned as the value pointed to by real_format. The strings returned
must not be modified in any way.
The values returned in byte_order may be the strings "little_endian
" or "big-endian ". The values returned in real_format may be the
strings "ieee 754-1985 " or "other ". Additional values may be
returned by future versions of the API.
ARGUMENTS
byte_order pointer to the returned string real_format pointer to
the returned string
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.get_local_real_format()
def airy_disk(x, y, cenx, ceny, volume, fwhm):
r"""
Returns : Float value
*args : double x,double y,double cenx,double ceny,double volume,double fwhm
C prototype: int cbf_airy_disk(double x, double y, double cenx, double ceny,
double volume, double fwhm, double * value);
CBFLib documentation:
DESCRIPTION
cbf_airy_disk sets value to point to the value taken at (x,y) of an
truncated Airy function approximation to a point-spread function of
total included volume volume and full width at half max fwhm centered
on (cenx, ceny).
cbf_airy_disk_volume sets to point to the integral in the box with
diagonal corners (xlo, ylo) and of (xhi, yhi) of a truncated Airy
function approximation to a point-spread function of total included
volume volume and full width at half max fwhm centered on (cenx,
ceny).
The Airy function used is an 8-digit approximation up to the first
minimum, after which it is forced to zero, so it cannot be used to
simulate diffraction rings.
ARGUMENTS
x the x-coordinate of a point in the real plane y
the y-coordinate of a point in the real plane xlo the
x-coordinate of a point in the real plane marking the left bound of
integration ylo the y-coordinate of a point in the real plane
marking the bottom bound of integration xhi the x-coordinate
of a point in the real plane marking the right bound of integration
yhi the y-coordinate of a point in the real plane marking the
top bound of integration cenx the x-coordinate of a point in
the real plane marking the PSF center ceny the y-coordinate of
a point in the real plane marking the PSF center volume the
total volume of the PSF fwhm the full-width at half max of the
PSF value Pointer to the value of the Airy function volumeout
Pointer to the value of the integral/TR>
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.airy_disk(x, y, cenx, ceny, volume, fwhm)
def get_local_real_byte_order():
r"""
Returns : char **bo,int *bolen
*args :
C prototype: int cbf_get_local_real_byte_order (char ** byte_order);
CBFLib documentation:
DESCRIPTION
cbf_get_local_integer_byte_order returns the byte order of integers
on the machine on which the API is being run in the form of a
character string returned as the value pointed to by byte_order.
cbf_get_local_real_byte_order returns the byte order of reals on the
machine on which the API is being run in the form of a character
string returned as the value pointed to by byte_order.
cbf_get_local_real_format returns the format of floats on the machine
on which the API is being run in the form of a character string
returned as the value pointed to by real_format. The strings returned
must not be modified in any way.
The values returned in byte_order may be the strings "little_endian
" or "big-endian ". The values returned in real_format may be the
strings "ieee 754-1985 " or "other ". Additional values may be
returned by future versions of the API.
ARGUMENTS
byte_order pointer to the returned string real_format pointer to
the returned string
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.get_local_real_byte_order()
def compute_reciprocal_cell(cell):
r"""
Returns : Float astar,Float bstar,Float cstar,Float alphastar,Float betastar,
Float gammastar
*args : double cell[6]
C prototype: int cbf_compute_reciprocal_cell ( double cell[6],
double rcell[6] );
CBFLib documentation:
DESCRIPTION
cbf_compute_reciprocal_cell sets rcell to point to the array of
reciprocal cell parameters computed from the double values cell[0:2]
giving the cell edge lengths a, b and c in Ångstroms, and the double
values cell[3:5] giving the cell angles α, β and γ in degrees. The
double values rcell[0:2] will be set to the reciprocal cell lengths
a^*, b^* and c^* in Ångstroms^-1 and the double values rcell[3:5]
will be set to the reciprocal cell angles α^*, β^* and γ^* in
degrees.
ARGUMENTS
cell Pointer to the array of 6 doubles giving the cell
parameters. rcell Pointer to the destination array of 6 doubles
giving the reciprocal cell parameters. volume Pointer to the
doubles for cell volume.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.compute_reciprocal_cell(cell)
def airy_disk_volume(xlo, ylo, xhi, yhi, cenx, ceny, volumein, fwhm):
r"""
Returns : Float volumeout
*args : double xlo,double ylo,double xhi,double yhi,double cenx,double ceny,
double volumein,double fwhm
C prototype: int cbf_airy_disk_volume(double xlo, double ylo, double xhi,
double yhi, double cenx, double ceny, double volume,
double fwhm, double * volumeout);
CBFLib documentation:
DESCRIPTION
cbf_airy_disk sets value to point to the value taken at (x,y) of an
truncated Airy function approximation to a point-spread function of
total included volume volume and full width at half max fwhm centered
on (cenx, ceny).
cbf_airy_disk_volume sets to point to the integral in the box with
diagonal corners (xlo, ylo) and of (xhi, yhi) of a truncated Airy
function approximation to a point-spread function of total included
volume volume and full width at half max fwhm centered on (cenx,
ceny).
The Airy function used is an 8-digit approximation up to the first
minimum, after which it is forced to zero, so it cannot be used to
simulate diffraction rings.
ARGUMENTS
x the x-coordinate of a point in the real plane y
the y-coordinate of a point in the real plane xlo the
x-coordinate of a point in the real plane marking the left bound of
integration ylo the y-coordinate of a point in the real plane
marking the bottom bound of integration xhi the x-coordinate
of a point in the real plane marking the right bound of integration
yhi the y-coordinate of a point in the real plane marking the
top bound of integration cenx the x-coordinate of a point in
the real plane marking the PSF center ceny the y-coordinate of
a point in the real plane marking the PSF center volume the
total volume of the PSF fwhm the full-width at half max of the
PSF value Pointer to the value of the Airy function volumeout
Pointer to the value of the integral/TR>
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.airy_disk_volume(xlo, ylo, xhi, yhi, cenx, ceny, volumein, fwhm)
class cbf_positioner_struct(object):
r"""Proxy of C cbf_positioner_struct struct."""
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
__repr__ = _swig_repr
matrix = property(_py2cbf.cbf_positioner_struct_matrix_get, _py2cbf.cbf_positioner_struct_matrix_set, doc=r"""matrix : a(3).a(4).double""")
axis = property(_py2cbf.cbf_positioner_struct_axis_get, _py2cbf.cbf_positioner_struct_axis_set, doc=r"""axis : p.cbf_axis_struct""")
axes = property(_py2cbf.cbf_positioner_struct_axes_get, _py2cbf.cbf_positioner_struct_axes_set, doc=r"""axes : size_t""")
matrix_is_valid = property(_py2cbf.cbf_positioner_struct_matrix_is_valid_get, _py2cbf.cbf_positioner_struct_matrix_is_valid_set, doc=r"""matrix_is_valid : int""")
matrix_ratio_used = property(_py2cbf.cbf_positioner_struct_matrix_ratio_used_get, _py2cbf.cbf_positioner_struct_matrix_ratio_used_set, doc=r"""matrix_ratio_used : double""")
axis_index_limit = property(_py2cbf.cbf_positioner_struct_axis_index_limit_get, _py2cbf.cbf_positioner_struct_axis_index_limit_set, doc=r"""axis_index_limit : size_t""")
def __init__(self):
r"""__init__(cbf_positioner_struct self) -> cbf_positioner_struct"""
_py2cbf.cbf_positioner_struct_swiginit(self, _py2cbf.new_cbf_positioner_struct())
__swig_destroy__ = _py2cbf.delete_cbf_positioner_struct
def get_rotation_range(self):
r"""
Returns : Float start,Float increment
*args :
C prototype: int cbf_get_rotation_range (cbf_goniometer goniometer,
unsigned int reserved, double *start, double *increment);
CBFLib documentation:
DESCRIPTION
cbf_get_rotation_range sets *start and *increment to the
corresponding values of the goniometer rotation axis used for the
exposure.
Either of the destination pointers may be NULL.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
goniometer Goniometer handle. reserved Unused. Any value other
than 0 is invalid. start Pointer to the destination start
value. increment Pointer to the destination increment value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_positioner_struct_get_rotation_range(self)
def rotate_vector(self, ratio, initial1, initial2, initial3):
r"""
Returns : double final1,double final2,double final3
*args : double ratio,double initial1,double initial2,double initial3
C prototype: int cbf_rotate_vector (cbf_goniometer goniometer,
unsigned int reserved, double ratio, double initial1,
double initial2, double initial3, double *final1,
double *final2, double *final3);
CBFLib documentation:
DESCRIPTION
cbf_rotate_vector sets *final1, *final2, and *final3 to the 3
components of the of the vector (initial1, initial2, initial3) after
reorientation by applying the goniometer rotations. The value ratio
specif ies the goniometer setting and varies from 0.0 at the
beginning of the exposure to 1.0 at the end, irrespective of the
actual rotation range.
Any of the destination pointers may be NULL.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
goniometer Goniometer handle. reserved Unused. Any value other
than 0 is invalid. ratio Goniometer setting. 0 = beginning of
exposure, 1 = end. initial1 x component of the initial vector.
initial2 y component of the initial vector. initial3 z
component of the initial vector. final1 Pointer to the
destination x component of the final vector. final2 Pointer to
the destination y component of the final vector. final3 Pointer
to the destination z component of the final vector.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_positioner_struct_rotate_vector(self, ratio, initial1, initial2, initial3)
def get_goniometer_poise(self, ratio):
r"""
Returns : Float vector1,Float vector2,Float vector3,Float offset1,Float offset2,
Float offset3,Float angle
*args : Float ratio
C prototype: int cbf_get_goniometer_poise(cbf_goniometer goniometer,
double ratio, double * vector1, double * vector2,
double * vector3, double * offset1, double * offset2,
double * offset3, double * angle);
CBFLib documentation:
DESCRIPTION
cbf_get_axis_poise sets vector1, vector2, vector3 to point to the
components of the axis vector for axis axis_id, offset1, offset2,
offset3 to point to the components of the axis base offset vector for
axis axis_id, and angle to point to the angle of rotation of axis
axis_id after application of the axis settings for frame frame_id,
using ratio, a value between 0 and 1, indicating how far into the
internal motion in the frame to go. If frame_id is the string ".
", the first frame found is used. If there is more than one frame,
which frame will be found is indeterminate. If frame_id is NULL, the
overall setting for the scan are used, rather than those for any
particular frame. The vector and offset reported are the reference
vector and offset of the axis axis_id transformed by application of
all motions of the axes on which axis_id depends.
cbf_get_goniometer_poise vector1, vector2, vector3 to point to the
components of the axis vector for the goniometer axis, offset1,
offset2, offset3 to point to the components of the axis base offset
vector for the goniometer axis, and angle to point to the angle of
rotation of the goniometer axis after application of all axis
settings in the goniometer deriving the vector, offset and angle from
the resulting matrix. Calculation of the vector is indeterminate if
the angle is zero.
cbf_get_axis_reference_poise sets vector1, vector2, vector3 to point
to the components of the axis vector for axis axis_id, offset1,
offset2, offset3 to point to the components of the axis base offset
vector for axis axis_id unmodified by axis rotations. Any of the
pointers may be specified as NULL.
ARGUMENTS
handle CBF handle. ratio A number between 0 and 1
indication how far into the frame to go vector1 Pointer to the
first component of the axis vector vector2 Pointer to the second
component of the axis vector vector3 Pointer to the third
component of the axis vector offset1 Pointer to the first
component of the axis offset offset2 Pointer to the second
component of the axis offset offset3 Pointer to the third
component of the axis offset angle Pointer to the rotation
angle axis_id The specified axis frame_id The specified
frame positioner CBF goniometer
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_positioner_struct_get_goniometer_poise(self, ratio)
def get_reciprocal(self, ratio, wavelength, real1, real2, real3):
r"""
Returns : double reciprocal1,double reciprocal2,double reciprocal3
*args : double ratio,double wavelength,double real1,double real2,double real3
C prototype: int cbf_get_reciprocal (cbf_goniometer goniometer,
unsigned int reserved, double ratio, double wavelength,
double real1, double real2, double real3,
double *reciprocal1, double *reciprocal2,
double *reciprocal3);
CBFLib documentation:
DESCRIPTION
cbf_get_reciprocal sets *reciprocal1, * reciprocal2, and *
reciprocal3 to the 3 components of the of the reciprocal-space vector
corresponding to the real-space vector (real1, real2, real3). The
reciprocal-space vector is oriented to correspond to the goniometer
setting with all axes at 0. The value wavelength is the wavlength in
Å and the value ratio specifies the current goniometer setting and
varies from 0.0 at the beginning of the exposur e to 1.0 at the end,
irrespective of the actual rotation range.
Any of the destination pointers may be NULL.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
goniometer Goniometer handle. reserved Unused. Any value
other than 0 is invalid. ratio Goniometer setting. 0 =
beginning of exposure, 1 = end. wavelength Wavelength in Å. real1
x component of the real-space vector. real2 y
component of the real-space vector. real3 z component of the
real-space vector. reciprocal1 Pointer to the destination x
component of the reciprocal-space vector. reciprocal2 Pointer to
the destination y component of the reciprocal-space vector.
reciprocal3 Pointer to the destination z component of the
reciprocal-space vector.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_positioner_struct_get_reciprocal(self, ratio, wavelength, real1, real2, real3)
def get_rotation_axis(self):
r"""
Returns : double vector1,double vector2,double vector3
*args :
C prototype: int cbf_get_rotation_axis (cbf_goniometer goniometer,
unsigned int reserved, double *vector1, double *vector2,
double *vector3);
CBFLib documentation:
DESCRIPTION
cbf_get_rotation_axis sets *vector1, *vector2, and *vector3 to the 3
components of the goniometer rotation axis used for the exposure.
Any of the destination pointers may be NULL.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
goniometer Goniometer handle. reserved Unused. Any value other
than 0 is invalid. vector1 Pointer to the destination x
component of the rotation axis. vector2 Pointer to the
destination y component of the rotation axis. vector3 Pointer to
the destination z component of the rotation axis.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_positioner_struct_get_rotation_axis(self)
# Register cbf_positioner_struct in _pycbf:
_py2cbf.cbf_positioner_struct_swigregister(cbf_positioner_struct)
class cbf_detector_struct(object):
r"""Proxy of C cbf_detector_struct struct."""
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
__repr__ = _swig_repr
positioner = property(_py2cbf.cbf_detector_struct_positioner_get, _py2cbf.cbf_detector_struct_positioner_set, doc=r"""positioner : cbf_positioner""")
displacement = property(_py2cbf.cbf_detector_struct_displacement_get, _py2cbf.cbf_detector_struct_displacement_set, doc=r"""displacement : a(2).double""")
increment = property(_py2cbf.cbf_detector_struct_increment_get, _py2cbf.cbf_detector_struct_increment_set, doc=r"""increment : a(2).double""")
axes = property(_py2cbf.cbf_detector_struct_axes_get, _py2cbf.cbf_detector_struct_axes_set, doc=r"""axes : size_t""")
index = property(_py2cbf.cbf_detector_struct_index_get, _py2cbf.cbf_detector_struct_index_set, doc=r"""index : a(2).size_t""")
def __init__(self):
r"""__init__(cbf_detector_struct self) -> cbf_detector_struct"""
_py2cbf.cbf_detector_struct_swiginit(self, _py2cbf.new_cbf_detector_struct())
__swig_destroy__ = _py2cbf.delete_cbf_detector_struct
def set_beam_center_fs(self, indexfast, indexslow, centerfast, centerslow):
r"""
Returns :
*args : double indexfast,double indexslow,double centerfast,double centerslow
C prototype: int cbf_set_beam_center_fs (cbf_detector detector,
double *indexfast, double *indexslow, double *centerfast,
double *centerslow);
CBFLib documentation:
DESCRIPTION
cbf_get_beam_center sets *centerfast and *centerslow to the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector and *indexfast and
*indexslow to the corresponding indices. cbf_set_beam_center sets the
offsets in the axis category for the detector element axis with
precedence 1 to place the beam center at the position given in mm by
*centerfast and *centerslow as the displacements in mm along the
detector axes from pixel (0, 0) to the point at which the beam
intersects the detector at the indices given *indexfast and
*indexslow. cbf_set_reference_beam_center sets the displacments in
the array_structure_list_axis category to place the beam center at
the position given in mm by *centerfast and *centerslow as the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector at the indices given
by *indexfast and *indexslow. In order to achieve consistent results,
a reference detector should be used for detector to have all axes at
their reference settings.
Note that the precedence 1 axis is the fastest axis, so that
*centerfast and *indexfast are the fast axis components of the center
and *centerslow and *indexslow are the slow axis components of the
center.
The _fs calls give the displacments in a fast-to-slow order. The
calls with no suffix and the calls _sf calls give the displacements
in slow-to-fast order
Any of the destination pointers may be NULL for getting the beam
center. For setting the beam axis, either the indices of the center
must not be NULL.
The indices are non-negative for beam centers within the detector
surface, but the center for an axis with a negative increment will be
negative for a beam center within the detector surface.
For cbf_set_beam_center if the diffrn_data_frame category exists with
a row for the corresponding element id, the values will be set for
_diffrn_data_frame.center_fast and _diffrn_data_frame.center_slow in
millimetres and the value of _diffrn_data_frame.center_units will be
set to 'mm'.
For cbf_set_reference_beam_center if the diffrn_detector_element
category exists with a row for the corresponding element id, the
values will be set for _diffrn_detector_element.reference_center_fast
and _diffrn_detector_element.reference_center_slow in millimetres and
the value of _diffrn_detector_element.reference_units will be set to
'mm'.
ARGUMENTS
detector Detector handle. indexfast Pointer to the destination
fast index. indexslow Pointer to the destination slow index.
centerfast Pointer to the destination displacement along the fast
axis. centerslow Pointer to the destination displacement along the
slow axis.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_set_beam_center_fs(self, indexfast, indexslow, centerfast, centerslow)
def set_reference_beam_center_fs(self, indexfast, indexslow, centerfast, centerslow):
r"""
Returns :
*args : double indexfast,double indexslow,double centerfast,double centerslow
C prototype: int cbf_set_reference_beam_center_fs (cbf_detector detector,
double *indexfast, double *indexslow, double *centerfast,
double *centerslow);
CBFLib documentation:
DESCRIPTION
cbf_get_beam_center sets *centerfast and *centerslow to the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector and *indexfast and
*indexslow to the corresponding indices. cbf_set_beam_center sets the
offsets in the axis category for the detector element axis with
precedence 1 to place the beam center at the position given in mm by
*centerfast and *centerslow as the displacements in mm along the
detector axes from pixel (0, 0) to the point at which the beam
intersects the detector at the indices given *indexfast and
*indexslow. cbf_set_reference_beam_center sets the displacments in
the array_structure_list_axis category to place the beam center at
the position given in mm by *centerfast and *centerslow as the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector at the indices given
by *indexfast and *indexslow. In order to achieve consistent results,
a reference detector should be used for detector to have all axes at
their reference settings.
Note that the precedence 1 axis is the fastest axis, so that
*centerfast and *indexfast are the fast axis components of the center
and *centerslow and *indexslow are the slow axis components of the
center.
The _fs calls give the displacments in a fast-to-slow order. The
calls with no suffix and the calls _sf calls give the displacements
in slow-to-fast order
Any of the destination pointers may be NULL for getting the beam
center. For setting the beam axis, either the indices of the center
must not be NULL.
The indices are non-negative for beam centers within the detector
surface, but the center for an axis with a negative increment will be
negative for a beam center within the detector surface.
For cbf_set_beam_center if the diffrn_data_frame category exists with
a row for the corresponding element id, the values will be set for
_diffrn_data_frame.center_fast and _diffrn_data_frame.center_slow in
millimetres and the value of _diffrn_data_frame.center_units will be
set to 'mm'.
For cbf_set_reference_beam_center if the diffrn_detector_element
category exists with a row for the corresponding element id, the
values will be set for _diffrn_detector_element.reference_center_fast
and _diffrn_detector_element.reference_center_slow in millimetres and
the value of _diffrn_detector_element.reference_units will be set to
'mm'.
ARGUMENTS
detector Detector handle. indexfast Pointer to the destination
fast index. indexslow Pointer to the destination slow index.
centerfast Pointer to the destination displacement along the fast
axis. centerslow Pointer to the destination displacement along the
slow axis.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_set_reference_beam_center_fs(self, indexfast, indexslow, centerfast, centerslow)
def get_beam_center(self):
r"""
Returns : double index1,double index2,double center1,double center2
*args :
C prototype: int cbf_get_beam_center (cbf_detector detector,
double *indexslow, double *indexfast, double *centerslow,
double *centerfast);
CBFLib documentation:
DESCRIPTION
cbf_get_beam_center sets *centerfast and *centerslow to the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector and *indexfast and
*indexslow to the corresponding indices. cbf_set_beam_center sets the
offsets in the axis category for the detector element axis with
precedence 1 to place the beam center at the position given in mm by
*centerfast and *centerslow as the displacements in mm along the
detector axes from pixel (0, 0) to the point at which the beam
intersects the detector at the indices given *indexfast and
*indexslow. cbf_set_reference_beam_center sets the displacments in
the array_structure_list_axis category to place the beam center at
the position given in mm by *centerfast and *centerslow as the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector at the indices given
by *indexfast and *indexslow. In order to achieve consistent results,
a reference detector should be used for detector to have all axes at
their reference settings.
Note that the precedence 1 axis is the fastest axis, so that
*centerfast and *indexfast are the fast axis components of the center
and *centerslow and *indexslow are the slow axis components of the
center.
The _fs calls give the displacments in a fast-to-slow order. The
calls with no suffix and the calls _sf calls give the displacements
in slow-to-fast order
Any of the destination pointers may be NULL for getting the beam
center. For setting the beam axis, either the indices of the center
must not be NULL.
The indices are non-negative for beam centers within the detector
surface, but the center for an axis with a negative increment will be
negative for a beam center within the detector surface.
For cbf_set_beam_center if the diffrn_data_frame category exists with
a row for the corresponding element id, the values will be set for
_diffrn_data_frame.center_fast and _diffrn_data_frame.center_slow in
millimetres and the value of _diffrn_data_frame.center_units will be
set to 'mm'.
For cbf_set_reference_beam_center if the diffrn_detector_element
category exists with a row for the corresponding element id, the
values will be set for _diffrn_detector_element.reference_center_fast
and _diffrn_detector_element.reference_center_slow in millimetres and
the value of _diffrn_detector_element.reference_units will be set to
'mm'.
ARGUMENTS
detector Detector handle. indexfast Pointer to the destination
fast index. indexslow Pointer to the destination slow index.
centerfast Pointer to the destination displacement along the fast
axis. centerslow Pointer to the destination displacement along the
slow axis.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_beam_center(self)
def get_pixel_coordinates_fs(self, indexfast, indexslow):
r"""
Returns : double coordinate1,double coordinate2,double coordinate3
*args : double indexfast,double indexslow
C prototype: int cbf_get_pixel_coordinates_fs (cbf_detector detector,
double indexfast, double indexslow, double *coordinate1,
double *coordinate2, double *coordinate3);
CBFLib documentation:
DESCRIPTION
cbf_get_pixel_coordinates, cbf_get_pixel_coordinates_fs and
cbf_get_pixel_coordinates_sf ses *coordinate1, *coordinate2, and
*coordinate3 to the vector position of pixel (indexfast, indexslow)
on the detector surface. If indexslow and indexfast are integers then
the coordinates correspond to the center of a pixel.
Any of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. indexslow Slow index. indexfast
Fast index. coordinate1 Pointer to the destination x component.
coordinate2 Pointer to the destination y component. coordinate3
Pointer to the destination z component.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_pixel_coordinates_fs(self, indexfast, indexslow)
def get_inferred_pixel_size(self, axis_number):
r"""
Returns : Float pixel size
*args : Int axis_number
C prototype: int cbf_get_inferred_pixel_size (cbf_detector detector,
int axis_number, double *psize);
CBFLib documentation:
DESCRIPTION
cbf_get_inferred_pixel_size, cbf_get_inferred_pixel_size_sf set
*psize to point to the double value in millimeters of the pixel size
for the axis axis_number value. The slow index is treated as axis 1
and the next faster index is treated as axis 2.
cbf_get_inferred_pixel_size_fs sets *psize to point to the double
value in millimeters of the pixel size for the axis axis_number
value. The fast index is treated as axis 1 and the next slower index
is treated as axis 2.
If the axis number is negative, the axes are used in the reverse
order so that an axis_number of -1 indicates the fast axes in a call
to cbf_get_inferred_pixel_size or cbf_get_inferred_pixel_size_sf and
indicates the fast axis in a call to cbf_get_inferred_pixel_size_fs.
ARGUMENTS
detector Detector handle. axis_number The number of the axis.
psize Pointer to the destination pizel size in mm.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_inferred_pixel_size(self, axis_number)
def get_pixel_area(self, index1, index2):
r"""
Returns : double area,double projected_area
*args : double index1,double index2
C prototype: int cbf_get_pixel_area (cbf_detector detector, double indexslow,
double indexfast, double *area, double *projected_area);
CBFLib documentation:
DESCRIPTION
cbf_get_pixel_area, cbf_get_pixel_area_fs and cbf_get_pixel_area_sf
set *area to the area of the pixel at (indexfast, indexslow) on the
detector surface and *projected_area to the apparent area of the
pixel as viewed from the sample position, with indexslow being the
slow axis and indexfast being the fast axis.
Either of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. indexfast Fast index.
indexslow Slow index. area Pointer to the
destination area in mm2. projected_area Pointer to the destination
apparent area in mm2.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_pixel_area(self, index1, index2)
def get_pixel_normal_fs(self, indexfast, indexslow):
r"""
Returns : double normal1,double normal2,double normal3
*args : double indexfast,double indexslow
C prototype: int cbf_get_pixel_normal_fs (cbf_detector detector,
double indexfast, double indexslow, double *normal1,
double *normal2, double *normal3);
CBFLib documentation:
DESCRIPTION
cbf_get_detector_normal, cbf_get_pixel_normal_fs and
cbf_get_pixel_normal_sf set *normal1, *normal2, and *normal3 to the 3
components of the of the normal vector to the pixel at (indexfast,
indexslow). The vector is normalized.
Any of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. indexslow Slow index. indexfast Fast
index. normal1 Pointer to the destination x component of the
normal vector. normal2 Pointer to the destination y component of
the normal vector. normal3 Pointer to the destination z component
of the normal vector.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_pixel_normal_fs(self, indexfast, indexslow)
def get_detector_surface_axes(self, index):
r"""get_detector_surface_axes(cbf_detector_struct self, int index) -> char const *"""
return _py2cbf.cbf_detector_struct_get_detector_surface_axes(self, index)
def get_detector_axes(self):
r"""
Returns : double slowaxis1,double slowaxis2,double slowaxis3,double fastaxis1,
double fastaxis2,double fastaxis3
*args :
C prototype: int cbf_get_detector_axes (cbf_detector detector,
double *slowaxis1, double *slowaxis2, double *slowaxis3,
double *fastaxis1, double *fastaxis2, double *fastaxis3);
CBFLib documentation:
DESCRIPTION
cbf_get_detector_axis_slow sets *slowaxis1, *slowaxis2, and
*slowaxis3 to the 3 components of the slow axis of the specified
detector at the current settings of all axes.
cbf_get_detector_axis_slow sets *fastaxis1, *fastaxis2, and
*fastaxis3 to the 3 components of the fast axis of the specified
detector at the current settings of all axes. cbf_get_detector_axes,
cbf_get_detector_axes_fs and int cbf_get_detector_axes_sf set
*slowaxis1, *slowaxis2, and *slowaxis3 to the 3 components of the
slow axis and *fastaxis1, *fastaxis2, and *fastaxis3 to the 3
components of the fast axis of the specified detector at the current
settings of all axes. cbf_get_detector_surface_axes sets *axis_id1
and *axis_id2 to the names of the two surface axes of the detector or
". ",
Any of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. slowaxis1 Pointer to the destination x
component of the slow axis vector. slowaxis2 Pointer to the
destination y component of the slow axis vector. slowaxis3 Pointer
to the destination z component of the slow axis vector. fastaxis1
Pointer to the destination x component of the fast axis vector.
fastaxis2 Pointer to the destination y component of the fast axis
vector. fastaxis3 Pointer to the destination z component of the
fast axis vector. axis_id1 Pointer to the destination first
surface axis name. axis_id2 Pointer to the destination second
surface axis name. axis_id3 Pointer to the destination third
surface axis name.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_detector_axes(self)
def set_reference_beam_center(self, indexslow, indexfast, centerslow, centerfast):
r"""
Returns :
*args : double indexslow,double indexfast,double centerslow,double centerfast
C prototype: int cbf_set_reference_beam_center (cbf_detector detector,
double *indexslow, double *indexfast, double *centerslow,
double *centerfast);
CBFLib documentation:
DESCRIPTION
cbf_get_beam_center sets *centerfast and *centerslow to the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector and *indexfast and
*indexslow to the corresponding indices. cbf_set_beam_center sets the
offsets in the axis category for the detector element axis with
precedence 1 to place the beam center at the position given in mm by
*centerfast and *centerslow as the displacements in mm along the
detector axes from pixel (0, 0) to the point at which the beam
intersects the detector at the indices given *indexfast and
*indexslow. cbf_set_reference_beam_center sets the displacments in
the array_structure_list_axis category to place the beam center at
the position given in mm by *centerfast and *centerslow as the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector at the indices given
by *indexfast and *indexslow. In order to achieve consistent results,
a reference detector should be used for detector to have all axes at
their reference settings.
Note that the precedence 1 axis is the fastest axis, so that
*centerfast and *indexfast are the fast axis components of the center
and *centerslow and *indexslow are the slow axis components of the
center.
The _fs calls give the displacments in a fast-to-slow order. The
calls with no suffix and the calls _sf calls give the displacements
in slow-to-fast order
Any of the destination pointers may be NULL for getting the beam
center. For setting the beam axis, either the indices of the center
must not be NULL.
The indices are non-negative for beam centers within the detector
surface, but the center for an axis with a negative increment will be
negative for a beam center within the detector surface.
For cbf_set_beam_center if the diffrn_data_frame category exists with
a row for the corresponding element id, the values will be set for
_diffrn_data_frame.center_fast and _diffrn_data_frame.center_slow in
millimetres and the value of _diffrn_data_frame.center_units will be
set to 'mm'.
For cbf_set_reference_beam_center if the diffrn_detector_element
category exists with a row for the corresponding element id, the
values will be set for _diffrn_detector_element.reference_center_fast
and _diffrn_detector_element.reference_center_slow in millimetres and
the value of _diffrn_detector_element.reference_units will be set to
'mm'.
ARGUMENTS
detector Detector handle. indexfast Pointer to the destination
fast index. indexslow Pointer to the destination slow index.
centerfast Pointer to the destination displacement along the fast
axis. centerslow Pointer to the destination displacement along the
slow axis.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_set_reference_beam_center(self, indexslow, indexfast, centerslow, centerfast)
def get_detector_axis_slow(self):
r"""
Returns : double slowaxis1,double slowaxis2,double slowaxis3
*args :
C prototype: int cbf_get_detector_axis_slow (cbf_detector detector,
double *slowaxis1, double *slowaxis2, double *slowaxis3);
CBFLib documentation:
DESCRIPTION
cbf_get_detector_axis_slow sets *slowaxis1, *slowaxis2, and
*slowaxis3 to the 3 components of the slow axis of the specified
detector at the current settings of all axes.
cbf_get_detector_axis_slow sets *fastaxis1, *fastaxis2, and
*fastaxis3 to the 3 components of the fast axis of the specified
detector at the current settings of all axes. cbf_get_detector_axes,
cbf_get_detector_axes_fs and int cbf_get_detector_axes_sf set
*slowaxis1, *slowaxis2, and *slowaxis3 to the 3 components of the
slow axis and *fastaxis1, *fastaxis2, and *fastaxis3 to the 3
components of the fast axis of the specified detector at the current
settings of all axes. cbf_get_detector_surface_axes sets *axis_id1
and *axis_id2 to the names of the two surface axes of the detector or
". ",
Any of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. slowaxis1 Pointer to the destination x
component of the slow axis vector. slowaxis2 Pointer to the
destination y component of the slow axis vector. slowaxis3 Pointer
to the destination z component of the slow axis vector. fastaxis1
Pointer to the destination x component of the fast axis vector.
fastaxis2 Pointer to the destination y component of the fast axis
vector. fastaxis3 Pointer to the destination z component of the
fast axis vector. axis_id1 Pointer to the destination first
surface axis name. axis_id2 Pointer to the destination second
surface axis name. axis_id3 Pointer to the destination third
surface axis name.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_detector_axis_slow(self)
def get_detector_distance(self):
r"""
Returns : double distance
*args :
C prototype: int cbf_get_detector_distance (cbf_detector detector,
double *distance);
CBFLib documentation:
DESCRIPTION
cbf_get_detector_distance sets *distance to the nearest distance from
the sample position to the detector plane.
ARGUMENTS
detector Detector handle. distance Pointer to the destination
distance.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_detector_distance(self)
def get_inferred_pixel_size_fs(self, axis_number):
r"""
Returns : Float pixel size
*args : Int axis_number
C prototype: int cbf_get_inferred_pixel_size_fs(cbf_detector detector,
int axis_number, double *psize);
CBFLib documentation:
DESCRIPTION
cbf_get_inferred_pixel_size, cbf_get_inferred_pixel_size_sf set
*psize to point to the double value in millimeters of the pixel size
for the axis axis_number value. The slow index is treated as axis 1
and the next faster index is treated as axis 2.
cbf_get_inferred_pixel_size_fs sets *psize to point to the double
value in millimeters of the pixel size for the axis axis_number
value. The fast index is treated as axis 1 and the next slower index
is treated as axis 2.
If the axis number is negative, the axes are used in the reverse
order so that an axis_number of -1 indicates the fast axes in a call
to cbf_get_inferred_pixel_size or cbf_get_inferred_pixel_size_sf and
indicates the fast axis in a call to cbf_get_inferred_pixel_size_fs.
ARGUMENTS
detector Detector handle. axis_number The number of the axis.
psize Pointer to the destination pizel size in mm.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_inferred_pixel_size_fs(self, axis_number)
def get_detector_normal(self):
r"""
Returns : double normal1,double normal2,double normal3
*args :
C prototype: int cbf_get_detector_normal (cbf_detector detector,
double *normal1, double *normal2, double *normal3);
CBFLib documentation:
DESCRIPTION
cbf_get_detector_normal sets *normal1, *normal2, and *normal3 to the
3 components of the of the normal vector to the detector plane. The
vector is normalized.
Any of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. normal1 Pointer to the destination x
component of the normal vector. normal2 Pointer to the destination
y component of the normal vector. normal3 Pointer to the
destination z component of the normal vector.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_detector_normal(self)
def get_detector_axis_fast(self):
r"""
Returns : double fastaxis1,double fastaxis2,double fastaxis3
*args :
C prototype: int cbf_get_detector_axis_fast (cbf_detector detector,
double *fastaxis1, double *fastaxis2, double *fastaxis3);
CBFLib documentation:
DESCRIPTION
cbf_get_detector_axis_slow sets *slowaxis1, *slowaxis2, and
*slowaxis3 to the 3 components of the slow axis of the specified
detector at the current settings of all axes.
cbf_get_detector_axis_slow sets *fastaxis1, *fastaxis2, and
*fastaxis3 to the 3 components of the fast axis of the specified
detector at the current settings of all axes. cbf_get_detector_axes,
cbf_get_detector_axes_fs and int cbf_get_detector_axes_sf set
*slowaxis1, *slowaxis2, and *slowaxis3 to the 3 components of the
slow axis and *fastaxis1, *fastaxis2, and *fastaxis3 to the 3
components of the fast axis of the specified detector at the current
settings of all axes. cbf_get_detector_surface_axes sets *axis_id1
and *axis_id2 to the names of the two surface axes of the detector or
". ",
Any of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. slowaxis1 Pointer to the destination x
component of the slow axis vector. slowaxis2 Pointer to the
destination y component of the slow axis vector. slowaxis3 Pointer
to the destination z component of the slow axis vector. fastaxis1
Pointer to the destination x component of the fast axis vector.
fastaxis2 Pointer to the destination y component of the fast axis
vector. fastaxis3 Pointer to the destination z component of the
fast axis vector. axis_id1 Pointer to the destination first
surface axis name. axis_id2 Pointer to the destination second
surface axis name. axis_id3 Pointer to the destination third
surface axis name.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_detector_axis_fast(self)
def get_detector_axes_fs(self):
r"""get_detector_axes_fs(cbf_detector_struct self)"""
return _py2cbf.cbf_detector_struct_get_detector_axes_fs(self)
def get_detector_axes_sf(self):
r"""
Returns : double slowaxis1,double slowaxis2,double slowaxis3,double fastaxis1,
double fastaxis2,double fastaxis3
*args :
C prototype: int cbf_get_detector_axes_sf (cbf_detector detector,
double *slowaxis1, double *slowaxis2, double *slowaxis3,
double *fastaxis1, double *fastaxis2, double *fastaxis3);
CBFLib documentation:
DESCRIPTION
cbf_get_detector_axis_slow sets *slowaxis1, *slowaxis2, and
*slowaxis3 to the 3 components of the slow axis of the specified
detector at the current settings of all axes.
cbf_get_detector_axis_slow sets *fastaxis1, *fastaxis2, and
*fastaxis3 to the 3 components of the fast axis of the specified
detector at the current settings of all axes. cbf_get_detector_axes,
cbf_get_detector_axes_fs and int cbf_get_detector_axes_sf set
*slowaxis1, *slowaxis2, and *slowaxis3 to the 3 components of the
slow axis and *fastaxis1, *fastaxis2, and *fastaxis3 to the 3
components of the fast axis of the specified detector at the current
settings of all axes. cbf_get_detector_surface_axes sets *axis_id1
and *axis_id2 to the names of the two surface axes of the detector or
". ",
Any of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. slowaxis1 Pointer to the destination x
component of the slow axis vector. slowaxis2 Pointer to the
destination y component of the slow axis vector. slowaxis3 Pointer
to the destination z component of the slow axis vector. fastaxis1
Pointer to the destination x component of the fast axis vector.
fastaxis2 Pointer to the destination y component of the fast axis
vector. fastaxis3 Pointer to the destination z component of the
fast axis vector. axis_id1 Pointer to the destination first
surface axis name. axis_id2 Pointer to the destination second
surface axis name. axis_id3 Pointer to the destination third
surface axis name.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_detector_axes_sf(self)
def get_pixel_coordinates_sf(self, indexslow, indexfast):
r"""
Returns : double coordinate1,double coordinate2,double coordinate3
*args : double indexslow,double indexfast
C prototype: int cbf_get_pixel_coordinates_sf (cbf_detector detector,
double indexslow, double indexfast, double *coordinate1,
double *coordinate2, double *coordinate3);
CBFLib documentation:
DESCRIPTION
cbf_get_pixel_coordinates, cbf_get_pixel_coordinates_fs and
cbf_get_pixel_coordinates_sf ses *coordinate1, *coordinate2, and
*coordinate3 to the vector position of pixel (indexfast, indexslow)
on the detector surface. If indexslow and indexfast are integers then
the coordinates correspond to the center of a pixel.
Any of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. indexslow Slow index. indexfast
Fast index. coordinate1 Pointer to the destination x component.
coordinate2 Pointer to the destination y component. coordinate3
Pointer to the destination z component.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_pixel_coordinates_sf(self, indexslow, indexfast)
def set_beam_center(self, indexslow, indexfast, centerslow, centerfast):
r"""
Returns :
*args : double indexslow,double indexfast,double centerslow,double centerfast
C prototype: int cbf_set_beam_center (cbf_detector detector,
double *indexslow, double *indexfast, double *centerslow,
double *centerfast);
CBFLib documentation:
DESCRIPTION
cbf_get_beam_center sets *centerfast and *centerslow to the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector and *indexfast and
*indexslow to the corresponding indices. cbf_set_beam_center sets the
offsets in the axis category for the detector element axis with
precedence 1 to place the beam center at the position given in mm by
*centerfast and *centerslow as the displacements in mm along the
detector axes from pixel (0, 0) to the point at which the beam
intersects the detector at the indices given *indexfast and
*indexslow. cbf_set_reference_beam_center sets the displacments in
the array_structure_list_axis category to place the beam center at
the position given in mm by *centerfast and *centerslow as the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector at the indices given
by *indexfast and *indexslow. In order to achieve consistent results,
a reference detector should be used for detector to have all axes at
their reference settings.
Note that the precedence 1 axis is the fastest axis, so that
*centerfast and *indexfast are the fast axis components of the center
and *centerslow and *indexslow are the slow axis components of the
center.
The _fs calls give the displacments in a fast-to-slow order. The
calls with no suffix and the calls _sf calls give the displacements
in slow-to-fast order
Any of the destination pointers may be NULL for getting the beam
center. For setting the beam axis, either the indices of the center
must not be NULL.
The indices are non-negative for beam centers within the detector
surface, but the center for an axis with a negative increment will be
negative for a beam center within the detector surface.
For cbf_set_beam_center if the diffrn_data_frame category exists with
a row for the corresponding element id, the values will be set for
_diffrn_data_frame.center_fast and _diffrn_data_frame.center_slow in
millimetres and the value of _diffrn_data_frame.center_units will be
set to 'mm'.
For cbf_set_reference_beam_center if the diffrn_detector_element
category exists with a row for the corresponding element id, the
values will be set for _diffrn_detector_element.reference_center_fast
and _diffrn_detector_element.reference_center_slow in millimetres and
the value of _diffrn_detector_element.reference_units will be set to
'mm'.
ARGUMENTS
detector Detector handle. indexfast Pointer to the destination
fast index. indexslow Pointer to the destination slow index.
centerfast Pointer to the destination displacement along the fast
axis. centerslow Pointer to the destination displacement along the
slow axis.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_set_beam_center(self, indexslow, indexfast, centerslow, centerfast)
def get_pixel_area_fs(self, indexfast, indexslow):
r"""
Returns : double area,double projected_area
*args : double indexfast,double indexslow
C prototype: int cbf_get_pixel_area_fs(cbf_detector detector,
double indexfast, double indexslow, double *area,
double *projected_area);
CBFLib documentation:
DESCRIPTION
cbf_get_pixel_area, cbf_get_pixel_area_fs and cbf_get_pixel_area_sf
set *area to the area of the pixel at (indexfast, indexslow) on the
detector surface and *projected_area to the apparent area of the
pixel as viewed from the sample position, with indexslow being the
slow axis and indexfast being the fast axis.
Either of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. indexfast Fast index.
indexslow Slow index. area Pointer to the
destination area in mm2. projected_area Pointer to the destination
apparent area in mm2.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_pixel_area_fs(self, indexfast, indexslow)
def get_beam_center_fs(self):
r"""
Returns : double indexfast,double indexslow,double centerfast,double centerslow
*args :
C prototype: int cbf_get_beam_center_fs (cbf_detector detector,
double *indexfast, double *indexslow, double *centerfast,
double *centerslow);
CBFLib documentation:
DESCRIPTION
cbf_get_beam_center sets *centerfast and *centerslow to the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector and *indexfast and
*indexslow to the corresponding indices. cbf_set_beam_center sets the
offsets in the axis category for the detector element axis with
precedence 1 to place the beam center at the position given in mm by
*centerfast and *centerslow as the displacements in mm along the
detector axes from pixel (0, 0) to the point at which the beam
intersects the detector at the indices given *indexfast and
*indexslow. cbf_set_reference_beam_center sets the displacments in
the array_structure_list_axis category to place the beam center at
the position given in mm by *centerfast and *centerslow as the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector at the indices given
by *indexfast and *indexslow. In order to achieve consistent results,
a reference detector should be used for detector to have all axes at
their reference settings.
Note that the precedence 1 axis is the fastest axis, so that
*centerfast and *indexfast are the fast axis components of the center
and *centerslow and *indexslow are the slow axis components of the
center.
The _fs calls give the displacments in a fast-to-slow order. The
calls with no suffix and the calls _sf calls give the displacements
in slow-to-fast order
Any of the destination pointers may be NULL for getting the beam
center. For setting the beam axis, either the indices of the center
must not be NULL.
The indices are non-negative for beam centers within the detector
surface, but the center for an axis with a negative increment will be
negative for a beam center within the detector surface.
For cbf_set_beam_center if the diffrn_data_frame category exists with
a row for the corresponding element id, the values will be set for
_diffrn_data_frame.center_fast and _diffrn_data_frame.center_slow in
millimetres and the value of _diffrn_data_frame.center_units will be
set to 'mm'.
For cbf_set_reference_beam_center if the diffrn_detector_element
category exists with a row for the corresponding element id, the
values will be set for _diffrn_detector_element.reference_center_fast
and _diffrn_detector_element.reference_center_slow in millimetres and
the value of _diffrn_detector_element.reference_units will be set to
'mm'.
ARGUMENTS
detector Detector handle. indexfast Pointer to the destination
fast index. indexslow Pointer to the destination slow index.
centerfast Pointer to the destination displacement along the fast
axis. centerslow Pointer to the destination displacement along the
slow axis.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_beam_center_fs(self)
def get_inferred_pixel_size_sf(self, axis_number):
r"""
Returns : Float pixel size
*args : Int axis_number
C prototype: int cbf_get_inferred_pixel_size_sf(cbf_detector detector,
int axis_number, double *psize);
CBFLib documentation:
DESCRIPTION
cbf_get_inferred_pixel_size, cbf_get_inferred_pixel_size_sf set
*psize to point to the double value in millimeters of the pixel size
for the axis axis_number value. The slow index is treated as axis 1
and the next faster index is treated as axis 2.
cbf_get_inferred_pixel_size_fs sets *psize to point to the double
value in millimeters of the pixel size for the axis axis_number
value. The fast index is treated as axis 1 and the next slower index
is treated as axis 2.
If the axis number is negative, the axes are used in the reverse
order so that an axis_number of -1 indicates the fast axes in a call
to cbf_get_inferred_pixel_size or cbf_get_inferred_pixel_size_sf and
indicates the fast axis in a call to cbf_get_inferred_pixel_size_fs.
ARGUMENTS
detector Detector handle. axis_number The number of the axis.
psize Pointer to the destination pizel size in mm.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_inferred_pixel_size_sf(self, axis_number)
def get_pixel_coordinates(self, index1, index2):
r"""
Returns : double coordinate1,double coordinate2,double coordinate3
*args : double index1,double index2
C prototype: int cbf_get_pixel_coordinates (cbf_detector detector,
double indexslow, double indexfast, double *coordinate1,
double *coordinate2, double *coordinate3);
CBFLib documentation:
DESCRIPTION
cbf_get_pixel_coordinates, cbf_get_pixel_coordinates_fs and
cbf_get_pixel_coordinates_sf ses *coordinate1, *coordinate2, and
*coordinate3 to the vector position of pixel (indexfast, indexslow)
on the detector surface. If indexslow and indexfast are integers then
the coordinates correspond to the center of a pixel.
Any of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. indexslow Slow index. indexfast
Fast index. coordinate1 Pointer to the destination x component.
coordinate2 Pointer to the destination y component. coordinate3
Pointer to the destination z component.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_pixel_coordinates(self, index1, index2)
def get_beam_center_sf(self):
r"""
Returns : double indexslow,double indexfast,double centerslow,double centerfast
*args :
C prototype: int cbf_get_beam_center_sf (cbf_detector detector,
double *indexslow, double *indexfast, double *centerslow,
double *centerfast);
CBFLib documentation:
DESCRIPTION
cbf_get_beam_center sets *centerfast and *centerslow to the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector and *indexfast and
*indexslow to the corresponding indices. cbf_set_beam_center sets the
offsets in the axis category for the detector element axis with
precedence 1 to place the beam center at the position given in mm by
*centerfast and *centerslow as the displacements in mm along the
detector axes from pixel (0, 0) to the point at which the beam
intersects the detector at the indices given *indexfast and
*indexslow. cbf_set_reference_beam_center sets the displacments in
the array_structure_list_axis category to place the beam center at
the position given in mm by *centerfast and *centerslow as the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector at the indices given
by *indexfast and *indexslow. In order to achieve consistent results,
a reference detector should be used for detector to have all axes at
their reference settings.
Note that the precedence 1 axis is the fastest axis, so that
*centerfast and *indexfast are the fast axis components of the center
and *centerslow and *indexslow are the slow axis components of the
center.
The _fs calls give the displacments in a fast-to-slow order. The
calls with no suffix and the calls _sf calls give the displacements
in slow-to-fast order
Any of the destination pointers may be NULL for getting the beam
center. For setting the beam axis, either the indices of the center
must not be NULL.
The indices are non-negative for beam centers within the detector
surface, but the center for an axis with a negative increment will be
negative for a beam center within the detector surface.
For cbf_set_beam_center if the diffrn_data_frame category exists with
a row for the corresponding element id, the values will be set for
_diffrn_data_frame.center_fast and _diffrn_data_frame.center_slow in
millimetres and the value of _diffrn_data_frame.center_units will be
set to 'mm'.
For cbf_set_reference_beam_center if the diffrn_detector_element
category exists with a row for the corresponding element id, the
values will be set for _diffrn_detector_element.reference_center_fast
and _diffrn_detector_element.reference_center_slow in millimetres and
the value of _diffrn_detector_element.reference_units will be set to
'mm'.
ARGUMENTS
detector Detector handle. indexfast Pointer to the destination
fast index. indexslow Pointer to the destination slow index.
centerfast Pointer to the destination displacement along the fast
axis. centerslow Pointer to the destination displacement along the
slow axis.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_beam_center_sf(self)
def get_pixel_area_sf(self, indexslow, indexfast):
r"""
Returns : double area,double projected_area
*args : double indexslow,double indexfast
C prototype: int cbf_get_pixel_area_sf(cbf_detector detector,
double indexslow, double indexfast, double *area,
double *projected_area);
CBFLib documentation:
DESCRIPTION
cbf_get_pixel_area, cbf_get_pixel_area_fs and cbf_get_pixel_area_sf
set *area to the area of the pixel at (indexfast, indexslow) on the
detector surface and *projected_area to the apparent area of the
pixel as viewed from the sample position, with indexslow being the
slow axis and indexfast being the fast axis.
Either of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. indexfast Fast index.
indexslow Slow index. area Pointer to the
destination area in mm2. projected_area Pointer to the destination
apparent area in mm2.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_pixel_area_sf(self, indexslow, indexfast)
def set_reference_beam_center_sf(self):
r"""
Returns :
*args : double indexslow,double indexfast,double centerslow,double centerfast
C prototype: int cbf_set_reference_beam_center_sf (cbf_detector detector,
double *indexslow, double *indexfast, double *centerslow,
double *centerfast);
CBFLib documentation:
DESCRIPTION
cbf_get_beam_center sets *centerfast and *centerslow to the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector and *indexfast and
*indexslow to the corresponding indices. cbf_set_beam_center sets the
offsets in the axis category for the detector element axis with
precedence 1 to place the beam center at the position given in mm by
*centerfast and *centerslow as the displacements in mm along the
detector axes from pixel (0, 0) to the point at which the beam
intersects the detector at the indices given *indexfast and
*indexslow. cbf_set_reference_beam_center sets the displacments in
the array_structure_list_axis category to place the beam center at
the position given in mm by *centerfast and *centerslow as the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector at the indices given
by *indexfast and *indexslow. In order to achieve consistent results,
a reference detector should be used for detector to have all axes at
their reference settings.
Note that the precedence 1 axis is the fastest axis, so that
*centerfast and *indexfast are the fast axis components of the center
and *centerslow and *indexslow are the slow axis components of the
center.
The _fs calls give the displacments in a fast-to-slow order. The
calls with no suffix and the calls _sf calls give the displacements
in slow-to-fast order
Any of the destination pointers may be NULL for getting the beam
center. For setting the beam axis, either the indices of the center
must not be NULL.
The indices are non-negative for beam centers within the detector
surface, but the center for an axis with a negative increment will be
negative for a beam center within the detector surface.
For cbf_set_beam_center if the diffrn_data_frame category exists with
a row for the corresponding element id, the values will be set for
_diffrn_data_frame.center_fast and _diffrn_data_frame.center_slow in
millimetres and the value of _diffrn_data_frame.center_units will be
set to 'mm'.
For cbf_set_reference_beam_center if the diffrn_detector_element
category exists with a row for the corresponding element id, the
values will be set for _diffrn_detector_element.reference_center_fast
and _diffrn_detector_element.reference_center_slow in millimetres and
the value of _diffrn_detector_element.reference_units will be set to
'mm'.
ARGUMENTS
detector Detector handle. indexfast Pointer to the destination
fast index. indexslow Pointer to the destination slow index.
centerfast Pointer to the destination displacement along the fast
axis. centerslow Pointer to the destination displacement along the
slow axis.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_set_reference_beam_center_sf(self)
def set_beam_center_sf(self):
r"""
Returns :
*args : double indexslow,double indexfast,double centerslow,double centerfast
C prototype: int cbf_set_beam_center_sf (cbf_detector detector,
double *indexslow, double *indexfast, double *centerslow,
double *centerfast);
CBFLib documentation:
DESCRIPTION
cbf_get_beam_center sets *centerfast and *centerslow to the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector and *indexfast and
*indexslow to the corresponding indices. cbf_set_beam_center sets the
offsets in the axis category for the detector element axis with
precedence 1 to place the beam center at the position given in mm by
*centerfast and *centerslow as the displacements in mm along the
detector axes from pixel (0, 0) to the point at which the beam
intersects the detector at the indices given *indexfast and
*indexslow. cbf_set_reference_beam_center sets the displacments in
the array_structure_list_axis category to place the beam center at
the position given in mm by *centerfast and *centerslow as the
displacements in mm along the detector axes from pixel (0, 0) to the
point at which the beam intersects the detector at the indices given
by *indexfast and *indexslow. In order to achieve consistent results,
a reference detector should be used for detector to have all axes at
their reference settings.
Note that the precedence 1 axis is the fastest axis, so that
*centerfast and *indexfast are the fast axis components of the center
and *centerslow and *indexslow are the slow axis components of the
center.
The _fs calls give the displacments in a fast-to-slow order. The
calls with no suffix and the calls _sf calls give the displacements
in slow-to-fast order
Any of the destination pointers may be NULL for getting the beam
center. For setting the beam axis, either the indices of the center
must not be NULL.
The indices are non-negative for beam centers within the detector
surface, but the center for an axis with a negative increment will be
negative for a beam center within the detector surface.
For cbf_set_beam_center if the diffrn_data_frame category exists with
a row for the corresponding element id, the values will be set for
_diffrn_data_frame.center_fast and _diffrn_data_frame.center_slow in
millimetres and the value of _diffrn_data_frame.center_units will be
set to 'mm'.
For cbf_set_reference_beam_center if the diffrn_detector_element
category exists with a row for the corresponding element id, the
values will be set for _diffrn_detector_element.reference_center_fast
and _diffrn_detector_element.reference_center_slow in millimetres and
the value of _diffrn_detector_element.reference_units will be set to
'mm'.
ARGUMENTS
detector Detector handle. indexfast Pointer to the destination
fast index. indexslow Pointer to the destination slow index.
centerfast Pointer to the destination displacement along the fast
axis. centerslow Pointer to the destination displacement along the
slow axis.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_set_beam_center_sf(self)
def get_pixel_normal(self, index1, index2):
r"""
Returns : double normal1,double normal2,double normal3
*args : double index1,double index2
C prototype: int cbf_get_pixel_normal (cbf_detector detector,
double indexslow, double indexfast, double *normal1,
double *normal2, double *normal3);
CBFLib documentation:
DESCRIPTION
cbf_get_detector_normal, cbf_get_pixel_normal_fs and
cbf_get_pixel_normal_sf set *normal1, *normal2, and *normal3 to the 3
components of the of the normal vector to the pixel at (indexfast,
indexslow). The vector is normalized.
Any of the destination pointers may be NULL.
ARGUMENTS
detector Detector handle. indexslow Slow index. indexfast Fast
index. normal1 Pointer to the destination x component of the
normal vector. normal2 Pointer to the destination y component of
the normal vector. normal3 Pointer to the destination z component
of the normal vector.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_detector_struct_get_pixel_normal(self, index1, index2)
# Register cbf_detector_struct in _pycbf:
_py2cbf.cbf_detector_struct_swigregister(cbf_detector_struct)
CBF_UNDEFNODE = _py2cbf.CBF_UNDEFNODE
CBF_LINK = _py2cbf.CBF_LINK
CBF_ROOT = _py2cbf.CBF_ROOT
CBF_DATABLOCK = _py2cbf.CBF_DATABLOCK
CBF_SAVEFRAME = _py2cbf.CBF_SAVEFRAME
CBF_CATEGORY = _py2cbf.CBF_CATEGORY
CBF_COLUMN = _py2cbf.CBF_COLUMN
class cbf_handle_struct(object):
r"""Proxy of C cbf_handle_struct struct."""
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
__repr__ = _swig_repr
node = property(_py2cbf.cbf_handle_struct_node_get, _py2cbf.cbf_handle_struct_node_set, doc=r"""node : p.cbf_node""")
row = property(_py2cbf.cbf_handle_struct_row_get, _py2cbf.cbf_handle_struct_row_set, doc=r"""row : int""")
search_row = property(_py2cbf.cbf_handle_struct_search_row_get, _py2cbf.cbf_handle_struct_search_row_set, doc=r"""search_row : int""")
def __init__(self):
r"""__init__(cbf_handle_struct self) -> cbf_handle_struct"""
_py2cbf.cbf_handle_struct_swiginit(self, _py2cbf.new_cbf_handle_struct())
__swig_destroy__ = _py2cbf.delete_cbf_handle_struct
def select_datablock(self, arg):
r"""
Returns :
*args : Integer
C prototype: int cbf_select_datablock (cbf_handle handle,
unsigned int datablock);
CBFLib documentation:
DESCRIPTION
cbf_select_datablock selects data block number datablock as the
current data block.
The first data block is number 0.
If the data block does not exist, the function returns CBF_NOTFOUND.
ARGUMENTS
handle CBF handle. datablock Number of the data block to
select.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_select_datablock(self, arg)
def force_new_datablock(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_force_new_datablock (cbf_handle handle,
const char *datablockname);
CBFLib documentation:
DESCRIPTION
cbf_force_new_datablock creates a new data block with name
datablockname and makes it the current data block. Duplicate data
block names are allowed. cbf_force_new_saveframe creates a new savew
frame with name saveframename and makes it the current save frame.
Duplicate save frame names are allowed.
Even if a save frame with this name already exists, a new save frame
is created and becomes the current save frame.
ARGUMENTS
handle CBF handle. datablockname The name of the new data
block. saveframename The name of the new save frame.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_force_new_datablock(self, arg)
def get_3d_image_fs_as_string(self, element_number, elsize, elsign, ndimfast, ndimmid, ndimslow):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int elsign,int ndimfast,int ndimmid,
int ndimslow
C prototype: int cbf_get_3d_image_fs (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
void *array, size_t elsize, int elsign, size_t ndimfast,
size_t ndimmid, size_t ndimslow);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_3d_image_fs_as_string(self, element_number, elsize, elsign, ndimfast, ndimmid, ndimslow)
def reset_datablocks(self):
r"""
Returns :
*args :
C prototype: int cbf_reset_datablocks (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_reset_datablocks deletes all categories from all data blocks.
The current data block does not change.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_reset_datablocks(self)
def set_tag_category(self, tagname, categoryname_in):
r"""
Returns :
*args : String tagname,String categoryname_in
C prototype: int cbf_set_tag_category (cbf_handle handle, const char* tagname,
const char* categoryname_in);
CBFLib documentation:
DESCRIPTION
cbf_find_tag_category sets categoryname to the category associated
with tagname in the dictionary associated with handle.
cbf_set_tag_category upddates the dictionary associated with handle
to indicated that tagname is in category categoryname_in.
ARGUMENTS
handle CBF handle. tagname tag name.
categoryname pointer to a returned category name.
categoryname_in input category name.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_tag_category(self, tagname, categoryname_in)
def require_tag_root(self, tagname):
r"""
Returns : String tagroot
*args : String tagname
C prototype: int cbf_require_tag_root (cbf_handle handle, const char* tagname,
const char** tagroot);
CBFLib documentation:
DESCRIPTION
cbf_find_tag_root sets *tagroot to the root tag of which tagname is
an alias. cbf_set_tag_root sets tagname as an alias of tagroot_in in
the dictionary associated with handle, creating the dictionary if
necessary. cbf_require_tag_root sets *tagroot to the root tag of
which tagname is an alias, if there is one, or to the value of
tagname, if tagname is not an alias.
A returned tagroot string must not be modified in any way.
ARGUMENTS
handle CBF handle. tagname tag name which may be an alias.
tagroot pointer to a returned tag root name. tagroot_in input
tag root name.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_require_tag_root(self, tagname)
def row_number(self):
r"""
Returns : Integer
*args :
C prototype: int cbf_row_number (cbf_handle handle, unsigned int *row);
CBFLib documentation:
DESCRIPTION
cbf_row_number sets *row to the number of the current row of the
current category.
ARGUMENTS
handle CBF handle. row Pointer to the destination row number.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_row_number(self)
def set_image(self, element_number, compression, data, elsize, elsign, ndimslow, ndimfast):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int elsign,int dimslow,int dimfast
C prototype: int cbf_set_image (cbf_handle handle, unsigned int reserved,
unsigned int element_number, unsigned int compression,
void *array, size_t elsize, int elsign, size_t ndimslow,
size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_image(self, element_number, compression, data, elsize, elsign, ndimslow, ndimfast)
def set_bin_sizes(self, element_number, slowbinsize_in, fastbinsize_in):
r"""
Returns :
*args : Integer element_number,Float slowbinsize_in,Float fastbinsize_in
C prototype: int cbf_set_bin_sizes(cbf_handle handle,
unsigned int element_number, double slowbinsize_in,
double fastbinsize_in);
CBFLib documentation:
DESCRIPTION
cbf_get_bin_sizes sets slowbinsize to point to the value of the
number of pixels composing one array element in the dimension that
changes at the second-fastest rate and fastbinsize to point to the
value of the number of pixels composing one array element in the
dimension that changes at the fastest rate for the dectector element
with the ordinal element_number. cbf_set_bin_sizes sets the the pixel
bin sizes in the "array_intensities " category to the values of
slowbinsize_in for the number of pixels composing one array element
in the dimension that changes at the second-fastest rate and
fastbinsize_in for the number of pixels composing one array element
in the dimension that changes at the fastest rate for the dectector
element with the ordinal element_number.
In order to allow for software binning involving fractions of pixels,
the bin sizes are doubles rather than ints.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. slowbinsize Pointer to the
returned number of pixels composing one array element in the
dimension that changes at the second-fastest rate. fastbinsize
Pointer to the returned number of pixels composing one array element
in the dimension that changes at the fastest rate. slowbinsize_in
The number of pixels composing one array element in the dimension
that changes at the second-fastest rate. fastbinsize_in The number
of pixels composing one array element in the dimension that changes
at the fastest rate.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_bin_sizes(self, element_number, slowbinsize_in, fastbinsize_in)
def new_row(self):
r"""
Returns :
*args :
C prototype: int cbf_new_row (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_new_row adds a new row to the current category and makes it the
current row.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_new_row(self)
def rewind_saveframe(self):
r"""
Returns :
*args :
C prototype: int cbf_rewind_saveframe (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_rewind_category makes the first category in the current data
block the current category. cbf_rewind_saveframe makes the first
saveframe in the current data block the current saveframe.
cbf_rewind_blockitem makes the first blockitem (category or
saveframe) in the current data block the current blockitem. The type
of the blockitem (CBF_CATEGORY or CBF_SAVEFRAME) is returned in type.
If there are no categories, saveframes or blockitems the function
returns CBF_NOTFOUND.
The current column and row become undefined.
ARGUMENTS
handle CBF handle. type CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_rewind_saveframe(self)
def get_realarrayparameters(self):
r"""
Returns : int compression,int binary_id,int elsize,int elements
*args :
C prototype: int cbf_get_realarrayparameters (cbf_handle handle,
unsigned int *compression, int *binary_id, size_t *elsize,
size_t *elements);
CBFLib documentation:
DESCRIPTION
cbf_get_integerarrayparameters sets *compression, *binary_id,
*elsize, *elsigned, *elunsigned, *elements, *minelement and
*maxelement to values read from the binary value of the item at the
current column and row. This provides all the arguments needed for a
subsequent call to cbf_set_integerarray, if a copy of the array is to
be made into another CIF or CBF. cbf_get_realarrayparameters sets
*compression, *binary_id, *elsize, *elements to values read from the
binary value of the item at the current column and row. This provides
all the arguments needed for a subsequent call to cbf_set_realarray,
if a copy of the arry is to be made into another CIF or CBF.
The variants cbf_get_integerarrayparameters_wdims,
cbf_get_integerarrayparameters_wdims_fs,
cbf_get_integerarrayparameters_wdims_sf,
cbf_get_realarrayparameters_wdims,
cbf_get_realarrayparameters_wdims_fs,
cbf_get_realarrayparameters_wdims_sf set **byteorder, *dimfast,
*dimmid, *dimslow, and *padding as well, providing the additional
parameters needed for a subsequent call to cbf_set_integerarray_wdims
or cbf_set_realarray_wdims.
The value returned in *byteorder is a pointer either to the string
"little_endian " or to the string "big_endian ". This should be
the byte order of the data, not necessarily of the host machine. No
attempt should be made to modify this string. At this time only
"little_endian " will be returned.
The values returned in *dimfast, *dimmid and *dimslow are the sizes
of the fastest changing, second fastest changing and third fastest
changing dimensions of the array, if specified, or zero, if not
specified.
The value returned in *padding is the size of the post-data padding,
if any and if specified in the data header. The value is given as a
count of octets.
If the value is not binary, the function returns CBF_ASCII.
ARGUMENTS
handle CBF handle. compression Compression method used.
elsize Size in bytes of each array element. binary_id
Pointer to the destination integer binary identifier. elsigned
Pointer to an integer. Set to 1 if the elements can be read as signed
integers. elunsigned Pointer to an integer. Set to 1 if the
elements can be read as unsigned integers. elements Pointer to
the destination number of elements. minelement Pointer to the
destination smallest element. maxelement Pointer to the
destination largest element. byteorder Pointer to the destination
byte order. dimfast Pointer to the destination fastest
dimension. dimmid Pointer to the destination second fastest
dimension. dimslow Pointer to the destination third fastest
dimension. padding Pointer to the destination padding size.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_realarrayparameters(self)
def get_pixel_size_sf(self, element_number, axis_number):
r"""
Returns : Float pixel_size
*args : Int element_number,Int axis_number
C prototype: int cbf_get_pixel_size_sf(cbf_handle handle,
unsigned int element_number, int axis_number,
double *psize);
CBFLib documentation:
DESCRIPTION
cbf_get_pixel_size and cbf_get_pixel_size_sf set *psize to point to
the double value in millimeters of the axis axis_number of the
detector element element_number. The axis_number is numbered from 1,
starting with the slowest axis. cbf_get_pixel_size_fs sets *psize to
point to the double value in millimeters of the axis axis_number of
the detector element element_number. The axis_number is numbered from
1, starting with the fastest axis.
If a negative axis number is given, the order of axes is reversed, so
that -1 specifies the slowest axis for cbf_get_pixel_size_fs and the
fastest axis for cbf_get_pixel_size_sf.
If the pixel size is not given explcitly in the "array_element_size
" category, the function returns CBF_NOTFOUND.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. axis_number The number of the
axis, starting from 1 for the fastest for cbf_get_pixel_size and
cbf_get_pixel_size_fs and the slowest for cbf_get_pixel_size_sf.
psize Pointer to the destination pixel size.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_pixel_size_sf(self, element_number, axis_number)
def force_new_category(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_force_new_category (cbf_handle handle,
const char *categoryname);
CBFLib documentation:
DESCRIPTION
cbf_force_new_category creates a new category in the current data
block with name categoryname and makes it the current category.
Duplicate category names are allowed.
Even if a category with this name already exists, a new category of
the same name is created and becomes the current category. The allows
for the creation of unlooped tag/value lists drawn from the same
category.
ARGUMENTS
handle CBF handle. categoryname The name of the new
category.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_force_new_category(self, arg)
def force_new_saveframe(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_force_new_saveframe (cbf_handle handle,
const char *saveframename);
CBFLib documentation:
DESCRIPTION
cbf_force_new_datablock creates a new data block with name
datablockname and makes it the current data block. Duplicate data
block names are allowed. cbf_force_new_saveframe creates a new savew
frame with name saveframename and makes it the current save frame.
Duplicate save frame names are allowed.
Even if a save frame with this name already exists, a new save frame
is created and becomes the current save frame.
ARGUMENTS
handle CBF handle. datablockname The name of the new data
block. saveframename The name of the new save frame.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_force_new_saveframe(self, arg)
def count_datablocks(self):
r"""
Returns : Integer
*args :
C prototype: int cbf_count_datablocks (cbf_handle handle,
unsigned int *datablocks);
CBFLib documentation:
DESCRIPTION
cbf_count_datablocks puts the number of data blocks in *datablocks .
ARGUMENTS
handle CBF handle. datablocks Pointer to the destination data
block count.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_count_datablocks(self)
def find_row(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_find_row (cbf_handle handle, const char *value);
CBFLib documentation:
DESCRIPTION
cbf_find_row makes the first row in the current column with value
value the current row.
The comparison is case-sensitive.
If a matching row does not exist, the function returns CBF_NOTFOUND.
The current column is not affected.
ARGUMENTS
handle CBF handle. value The value of the row to find.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_find_row(self, arg)
def select_column(self, arg):
r"""
Returns :
*args : Integer
C prototype: int cbf_select_column (cbf_handle handle, unsigned int column);
CBFLib documentation:
DESCRIPTION
cbf_select_column selects column number column in the current
category as the current column.
The first column is number 0.
The current row is not affected
If the column does not exist, the function returns CBF_NOTFOUND.
ARGUMENTS
handle CBF handle. column Number of the column to select.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_select_column(self, arg)
def construct_detector(self, element_number):
r"""
Returns : pycbf detector object
*args : Integer element_number
C prototype: int cbf_construct_detector (cbf_handle handle,
cbf_detector *detector, unsigned int element_number);
CBFLib documentation:
DESCRIPTION
cbf_construct_detector constructs a detector object for detector
element number element_number using the description in the CBF object
handle and initialises the detector handle *detector.
cbf_construct_reference_detector constructs a detector object for
detector element number element_number using the description in the
CBF object handle and initialises the detector handle *detector using
the reference settings of the axes. cbf_require_reference_detector is
similar, but try to force the creations of missing intermediate
categories needed to construct a detector object.
ARGUMENTS
handle CBF handle. detector Pointer to the
destination detector handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_construct_detector(self, element_number)
def get_axis_depends_on(self, axis_id):
r"""
Returns : String
*args : String axis_id
C prototype: int cbf_get_axis_depends_on (cbf_handle handle,
const char *axis_id, const char * *depends_on);
CBFLib documentation:
DESCRIPTION
cbf_count_axis_ancestors sets ancestors to the number of ancestors of
axis axis_id. cbf_get_axis_ancestor sets *ancestor to the ancestor
axis of index ancestor_index of axis axis_id, starting with axis_id
for ancestor_index 0.
cbf_get_axis_depends_on sets *depends_on to the immediate ancestor of
axis_id or to ". " if there is no such ancestor.
cbf_get_axis_equipment sets *equipment to the equipment of axis_id or
to ". " if there is no such equipment.
cbf_get_axis_equipment_component sets *equipment_component to the
equipment_component of axis_id or to ". " if there is no such
equipment_component.
cbf_get_axis_offset sets *offset1, *offset2 and *offset3 to the
components of the ofset of axis_id.
cbf_get_axis_rotation sets rotation to the rotation of axis_id or to
0 if there is no such rotation. cbf_get_axis_rotation_axis sets
*rotation_axis to the rotation_axis of axis_id or to ". " if there
is no such rotation_axis.
cbf_get_axis_setting sets *start and *increment to the corresponding
values of the axis axis_id. Any of the destination pointers may be
NULL.
cbf_get_axis_type sets axis_type to the type of axis_id.
cbf_get_axis_vector sets *vector1, *vector2 and *vector3 to the
components of the vector of axis_id.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any
value other than 0 is invalid. axis_id Axis id.
ancestor_index Integer index of the desired ancestor, starting
with 0 for the current axis_id. ancestor Pointer to
destination ancestor name pointer. depends_on Pointer to
destination depends_on name pointer. equipment Pointer to
destination equipment name pointer. equipment_component Pointer to
destination equipment_component name pointer. offset1
Pointer to destination first offset component value. offset2
Pointer to destination second offset component value. offset3
Pointer to destination third offset component value.
rotation Pointer to destination rotation value.
rotation_axis Pointer to destination rotation_axisn name
pointer. start Pointer to the destination start
value. increment Pointer to the destination increment
value. type Pointer to destination axis type of type
. vector1 Pointer to destination first vector component
value. vector2 Pointer to destination second vector
component value. vector3 Pointer to destination third
vector component value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_depends_on(self, axis_id)
def rewind_column(self):
r"""
Returns :
*args :
C prototype: int cbf_rewind_column (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_rewind_column makes the first column in the current category the
current column.
If there are no columns, the function returns CBF_NOTFOUND.
The current row is not affected.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_rewind_column(self)
def construct_reference_positioner(self, axis_id):
r"""
Returns : pycbf positioner object
*args : String axis_id
C prototype: int cbf_construct_reference_positioner (cbf_handle handle,
cbf_positioner *positioner, const char *axis_id);
CBFLib documentation:
DESCRIPTION
cbf_construct_positioner constructs a positioner object for the axis
given by axis_id using the description in the CBF object handle and
initialises the positioner handle *positioner.
cbf_construct_reference positioner constructs a positioner object for
the axis given by axis_id using the description in the CBF object
handle and initialises the detector handle *detector using the
reference settings of the axes.
ARGUMENTS
handle CBF handle. positioner Pointer to the destination
positioner handle. axis_id The identifier of the axis in the
"axis " category.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_construct_reference_positioner(self, axis_id)
def require_column_doublevalue(self, columnname, defaultvalue):
r"""
Returns : Float defaultvalue
*args : String columnname,Float Value
C prototype: int cbf_require_column_doublevalue (cbf_handle handle,
const char *columnname, double *number,
const double defaultvalue);
CBFLib documentation:
DESCRIPTION
cbf_require_column_doublevalue sets *number to the value of the ASCII
item at the current row for the column given with the name given by
*columnname, with the value interpreted as a decimal floating-point
number, or to the number given by defaultvalue if the item cannot be
found.
ARGUMENTS
handle CBF handle. columnname Name of the column
containing the number. number pointer to the location to
receive the floating-point value. defaultvalue Value to use if the
requested column and value cannot be found.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_require_column_doublevalue(self, columnname, defaultvalue)
def get_datestamp(self):
r"""
Returns : int year,int month,int day,int hour,int minute,double second,
int timezone
*args :
C prototype: int cbf_get_datestamp (cbf_handle handle, unsigned int reserved,
int *year, int *month, int *day, int *hour, int *minute,
double *second, int *timezone);
CBFLib documentation:
DESCRIPTION
cbf_get_datestamp sets *year, *month, *day, *hour, *minute and
*second to the corresponding values of the collection timestamp.
*timezone is set to timezone difference from UTC in minutes. The
parameter < i>reserved is presently unused and should be set to 0.
Any of the destination pointers may be NULL.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other than 0 is
invalid. year Pointer to the destination timestamp year. month
Pointer to the destination timestamp month (1-12). day
Pointer to the destination timestamp day (1-31). hour Pointer
to the destination timestamp hour (0-23). minute Pointer to the
destination timestamp minute (0-59). second Pointer to the
destination timestamp second (0-60.0). timezone Pointer to the
destination timezone difference from UTC in minutes.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_datestamp(self)
def get_integervalue(self):
r"""
Returns : int
*args :
C prototype: int cbf_get_integervalue (cbf_handle handle, int *number);
CBFLib documentation:
DESCRIPTION
cbf_get_integervalue sets *number to the value of the ASCII item at
the current column and row interpreted as a decimal integer.
cbf_require_integervalue sets *number to the value of the ASCII item
at the current column and row interpreted as a decimal integer,
setting it to defaultvalue if necessary.
If the value is not ASCII, the function returns CBF_BINARY.
ARGUMENTS
handle CBF handle. number pointer to the number.
defaultvalue default number value.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_integervalue(self)
def get_crystal_id(self):
r"""
Returns :
*args : string
C prototype: int cbf_get_crystal_id (cbf_handle handle,
const char **crystal_id);
CBFLib documentation:
DESCRIPTION
cbf_get_crystal_id sets *crystal_id to point to the ASCII value of
the "diffrn.crystal_id " entry.
If the value is not ASCII, the function returns CBF_BINARY.
The value will be valid as long as the item exists and has not been
set to a new value.
The value must not be modified by the program in any way.
ARGUMENTS
handle CBF handle. crystal_id Pointer to the destination
value pointer.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_crystal_id(self)
def get_doublevalue(self):
r"""
Returns : double
*args :
C prototype: int cbf_get_doublevalue (cbf_handle handle, double *number);
CBFLib documentation:
DESCRIPTION
cbf_get_doublevalue sets *number to the value of the ASCII item at
the current column and row interpreted as a decimal floating-point
number. cbf_require_doublevalue sets *number to the value of the
ASCII item at the current column and row interpreted as a decimal
floating-point number, setting it to defaultvalue if necessary.
If the value is not ASCII, the function returns CBF_BINARY.
ARGUMENTS
handle CBF handle. number Pointer to the destination
number. defaultvalue default number value.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_doublevalue(self)
def get_unit_cell(self):
r"""
Returns : Float a,Float b,Float c,Float alpha,Float beta,Float gamma
*args :
C prototype: int cbf_get_unit_cell (cbf_handle handle, double cell[6],
double cell_esd[6] );
CBFLib documentation:
DESCRIPTION
cbf_get_unit_cell sets cell[0:2] to the double values of the cell
edge lengths a, b and c in Ångstroms, cell[3:5] to the double values
of the cell angles α, β and γ in degrees, cell_esd[0:2] to the
double values of the estimated strandard deviations of the cell edge
lengths a, b and c in Ångstroms, cell_esd[3:5] to the double values
of the estimated standard deviations of the the cell angles α, β
and γ in degrees.
The values returned are retrieved from the first row of the "cell
" category. The value of "_cell.entry_id " is ignored.
cell or cell_esd may be NULL.
If cell is NULL, the cell parameters are not retrieved.
If cell_esd is NULL, the cell parameter esds are not retrieved.
If the "cell " category is present, but some of the values are
missing, zeros are returned for the missing values.
ARGUMENTS
handle CBF handle. cell Pointer to the destination array of
6 doubles for the cell parameters. cell_esd Pointer to the
destination array of 6 doubles for the cell parameter esds.
RETURN VALUE
Returns an error code on failure or 0 for success. No errors is
returned for missing values if the "cell " category exists.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_unit_cell(self)
def get_unit_cell_esd(self):
r"""get_unit_cell_esd(cbf_handle_struct self)"""
return _py2cbf.cbf_handle_struct_get_unit_cell_esd(self)
def get_axis_type(self, axis_id):
r"""
Returns : String
*args : String axis_id
C prototype: int cbf_get_axis_type (cbf_handle handle, const char *axis_id,
cbf_axis_type *axis_type);
CBFLib documentation:
DESCRIPTION
cbf_count_axis_ancestors sets ancestors to the number of ancestors of
axis axis_id. cbf_get_axis_ancestor sets *ancestor to the ancestor
axis of index ancestor_index of axis axis_id, starting with axis_id
for ancestor_index 0.
cbf_get_axis_depends_on sets *depends_on to the immediate ancestor of
axis_id or to ". " if there is no such ancestor.
cbf_get_axis_equipment sets *equipment to the equipment of axis_id or
to ". " if there is no such equipment.
cbf_get_axis_equipment_component sets *equipment_component to the
equipment_component of axis_id or to ". " if there is no such
equipment_component.
cbf_get_axis_offset sets *offset1, *offset2 and *offset3 to the
components of the ofset of axis_id.
cbf_get_axis_rotation sets rotation to the rotation of axis_id or to
0 if there is no such rotation. cbf_get_axis_rotation_axis sets
*rotation_axis to the rotation_axis of axis_id or to ". " if there
is no such rotation_axis.
cbf_get_axis_setting sets *start and *increment to the corresponding
values of the axis axis_id. Any of the destination pointers may be
NULL.
cbf_get_axis_type sets axis_type to the type of axis_id.
cbf_get_axis_vector sets *vector1, *vector2 and *vector3 to the
components of the vector of axis_id.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any
value other than 0 is invalid. axis_id Axis id.
ancestor_index Integer index of the desired ancestor, starting
with 0 for the current axis_id. ancestor Pointer to
destination ancestor name pointer. depends_on Pointer to
destination depends_on name pointer. equipment Pointer to
destination equipment name pointer. equipment_component Pointer to
destination equipment_component name pointer. offset1
Pointer to destination first offset component value. offset2
Pointer to destination second offset component value. offset3
Pointer to destination third offset component value.
rotation Pointer to destination rotation value.
rotation_axis Pointer to destination rotation_axisn name
pointer. start Pointer to the destination start
value. increment Pointer to the destination increment
value. type Pointer to destination axis type of type
. vector1 Pointer to destination first vector component
value. vector2 Pointer to destination second vector
component value. vector3 Pointer to destination third
vector component value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_type(self, axis_id)
def remove_column(self):
r"""
Returns :
*args :
C prototype: int cbf_remove_column (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_remove_column deletes the current column.
The current column becomes undefined.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_remove_column(self)
def rewind_blockitem(self):
r"""
Returns : CBF_NODETYPE
*args :
C prototype: int cbf_rewind_blockitem (cbf_handle handle,
CBF_NODETYPE * type);
CBFLib documentation:
DESCRIPTION
cbf_rewind_category makes the first category in the current data
block the current category. cbf_rewind_saveframe makes the first
saveframe in the current data block the current saveframe.
cbf_rewind_blockitem makes the first blockitem (category or
saveframe) in the current data block the current blockitem. The type
of the blockitem (CBF_CATEGORY or CBF_SAVEFRAME) is returned in type.
If there are no categories, saveframes or blockitems the function
returns CBF_NOTFOUND.
The current column and row become undefined.
ARGUMENTS
handle CBF handle. type CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_rewind_blockitem(self)
def get_value(self):
r"""
Returns :
*args : string
C prototype: int cbf_get_value (cbf_handle handle, const char **value);
CBFLib documentation:
DESCRIPTION
cbf_get_value sets *value to point to the ASCII value of the item at
the current column and row. cbf_require_value sets *value to point to
the ASCII value of the item at the current column and row, creating
the data item if necessary and initializing it to a copy of
defaultvalue.
If the value is not ASCII, the function returns CBF_BINARY.
The value will be valid as long as the item exists and has not been
set to a new value.
The value must not be modified by the program in any way.
ARGUMENTS
handle CBF handle. value Pointer to the destination
value pointer. defaultvalue Default value character string.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_value(self)
def count_categories(self):
r"""
Returns : Integer
*args :
C prototype: int cbf_count_categories (cbf_handle handle,
unsigned int *categories);
CBFLib documentation:
DESCRIPTION
cbf_count_categories puts the number of categories in the current
data block in *categories.
ARGUMENTS
handle CBF handle. categories Pointer to the destination
category count.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_count_categories(self)
def read_widefile(self, filename, headers):
r"""
Returns :
*args : String filename,Integer headers
C prototype: int cbf_read_widefile (cbf_handle handle, FILE *file, int flags);
CBFLib documentation:
DESCRIPTION
cbf_read_file reads the CBF or CIF file file into the CBF object
specified by handle, using the CIF 1.0 convention of 80 character
lines. cbf_read_widefile reads the CBF or CIF file file into the CBF
object specified by handle, using the CIF 1.1 convention of 2048
character lines. A warning is issued to stderr for ascii lines over
the limit. No test is performed on binary sections.
Validation is performed in three ways levels: during the lexical
scan, during the parse, and, if a dictionary was converted, against
the value types, value enumerations, categories and parent-child
relationships specified in the dictionary.
flags controls the interpretation of binary section headers, the
parsing of brackets constructs and the parsing of treble-quoted
strings.
MSG_DIGEST: Instructs CBFlib to check that the digest
of the binary section matches any header digest value. If the digests
do not match, the call will return CBF_FORMAT. This evaluation and
comparison is delayed (a "lazy " evaluation) to ensure maximal
processing efficiency. If an immediately evaluation is required, see
MSG_DIGESTNOW, below. MSG_DIGESTNOW: Instructs CBFlib to
check that the digest of the binary section matches any header
digeste value. If the digests do not match, the call will return
CBF_FORMAT. This evaluation and comparison is performed during
initial parsing of the section to ensure timely error reporting at
the expense of processing efficiency. If a more efficient delayed (
"lazy ") evaluation is required, see MSG_DIGEST, above.
MSG_DIGESTWARN: Instructs CBFlib to check that the digest
of the binary section matches any header digeste value. If the
digests do not match, a warning message will be sent to stderr, but
processing will attempt to continue. This evaluation and comparison
is first performed during initial parsing of the section to ensure
timely error reporting at the expense of processing efficiency. An
mismatch of the message digest usually indicates a serious error, but
it is sometimes worth continuing processing to try to isolate the
cause of the error. Use this option with caution. MSG_NODIGEST:
Do not check the digest (default). PARSE_BRACKETS:
Accept DDLm bracket-delimited [item,item,...item] or
{item,item,...item} or (item,item,...item) constructs as valid,
stripping non-quoted embedded whitespace and comments. These
constructs may span multiple lines. PARSE_LIBERAL_BRACKETS: Accept
DDLm bracket-delimited [item,item,...item] or {item,item,...item} or
(item,item,...item) constructs as valid, stripping embedded
non-quoted, non-separating whitespace and comments. These constructs
may span multiple lines. In this case, whitespace may be used as an
alternative to the comma. PARSE_TRIPLE_QUOTES: Accept DDLm
triple-quoted " " "item,item,...item " " " or
'''item,item,...item''' constructs as valid, stripping embedded
whitespace and comments. These constructs may span multiple lines. If
this flag is set, then ''' will not be interpreted as a quoted
apoptrophe and " " " will not be interpreted as a quoted double
quote mark and PARSE_NOBRACKETS: Do not accept DDLm
bracket-delimited [item,item,...item] or {item,item,...item} or
(item,item,...item) constructs as valid, stripping non-quoted
embedded whitespace and comments. These constructs may span multiple
lines. PARSE_NOTRIPLE_QUOTES: No not accept DDLm triple-quoted "
" "item,item,...item " " " or '''item,item,...item''' constructs
as valid, stripping embedded whitespace and comments. These
constructs may span multiple lines. If this flag is set, then '''
will be interpreted as a quoted apostrophe and " " " will be
interpreted as a quoted double quote mark.
CBFlib defers reading binary sections as long as possible. In the
current version of CBFlib, this means that:
1. The file must be a random-access file opened in binary mode (fopen
( ,
"""
return _py2cbf.cbf_handle_struct_read_widefile(self, filename, headers)
def set_wavelength(self, wavelength):
r"""
Returns : double wavelength
*args :
C prototype: int cbf_set_wavelength (cbf_handle handle, double wavelength);
CBFLib documentation:
DESCRIPTION
cbf_set_wavelength sets the current wavelength in Å to wavelength.
ARGUMENTS
handle CBF handle. wavelength Wavelength in Å.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_wavelength(self, wavelength)
def get_axis_vector(self, axis_id):
r"""
Returns : Float vector1,Float vector2,Float vector3
*args : String axis_id
C prototype: int cbf_get_axis_vector (cbf_handle handle, const char *axis_id,
double *vector1, double *vector2, double *vector3);
CBFLib documentation:
DESCRIPTION
cbf_count_axis_ancestors sets ancestors to the number of ancestors of
axis axis_id. cbf_get_axis_ancestor sets *ancestor to the ancestor
axis of index ancestor_index of axis axis_id, starting with axis_id
for ancestor_index 0.
cbf_get_axis_depends_on sets *depends_on to the immediate ancestor of
axis_id or to ". " if there is no such ancestor.
cbf_get_axis_equipment sets *equipment to the equipment of axis_id or
to ". " if there is no such equipment.
cbf_get_axis_equipment_component sets *equipment_component to the
equipment_component of axis_id or to ". " if there is no such
equipment_component.
cbf_get_axis_offset sets *offset1, *offset2 and *offset3 to the
components of the ofset of axis_id.
cbf_get_axis_rotation sets rotation to the rotation of axis_id or to
0 if there is no such rotation. cbf_get_axis_rotation_axis sets
*rotation_axis to the rotation_axis of axis_id or to ". " if there
is no such rotation_axis.
cbf_get_axis_setting sets *start and *increment to the corresponding
values of the axis axis_id. Any of the destination pointers may be
NULL.
cbf_get_axis_type sets axis_type to the type of axis_id.
cbf_get_axis_vector sets *vector1, *vector2 and *vector3 to the
components of the vector of axis_id.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any
value other than 0 is invalid. axis_id Axis id.
ancestor_index Integer index of the desired ancestor, starting
with 0 for the current axis_id. ancestor Pointer to
destination ancestor name pointer. depends_on Pointer to
destination depends_on name pointer. equipment Pointer to
destination equipment name pointer. equipment_component Pointer to
destination equipment_component name pointer. offset1
Pointer to destination first offset component value. offset2
Pointer to destination second offset component value. offset3
Pointer to destination third offset component value.
rotation Pointer to destination rotation value.
rotation_axis Pointer to destination rotation_axisn name
pointer. start Pointer to the destination start
value. increment Pointer to the destination increment
value. type Pointer to destination axis type of type
. vector1 Pointer to destination first vector component
value. vector2 Pointer to destination second vector
component value. vector3 Pointer to destination third
vector component value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_vector(self, axis_id)
def set_pixel_size_sf(self, element_number, axis_number, psize):
r"""
Returns :
*args : Int element_number,Int axis_number,Float pixel size
C prototype: int cbf_set_pixel_size_sf(cbf_handle handle,
unsigned int element_number, int axis_number,
double psize);
CBFLib documentation:
DESCRIPTION
cbf_set_pixel_size and cbf_set_pixel_size_sf set the item in the
"size " column of the "array_structure_list " category at the
row which matches axis axis_number of the detector element
element_number converting the double pixel size psize from meters to
millimeters in storing it in the "size " column for the axis
axis_number of the detector element element_number. The axis_number
is numbered from 1, starting with the slowest axis.
cbf_set_pixel_size_fs sets the item in the "size " column of the
"array_structure_list " category at the row which matches axis
axis_number of the detector element element_number converting the
double pixel size psize from meters to millimeters in storing it in
the "size " column for the axis axis_number of the detector
element element_number. The axis_number is numbered from 1, starting
with the fastest axis.
If a negative axis number is given, the order of axes is reversed, so
that -1 specifies the slowest axis for cbf_get_pixel_size_fs and the
fastest axis for cbf_get_pixel_size_sf.
If the "array_structure_list " category does not already exist, it
is created.
If the appropriate row in the "array_structure_list " catgeory
does not already exist, it is created.
If the pixel size is not given explcitly in the "array_element_size
category ", the function returns CBF_NOTFOUND.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. axis_number The number of the
axis, fastest first, starting from 1.
"""
return _py2cbf.cbf_handle_struct_set_pixel_size_sf(self, element_number, axis_number, psize)
def get_diffrn_id(self):
r"""
Returns :
*args : string
C prototype: int cbf_get_diffrn_id (cbf_handle handle,
const char **diffrn_id);
CBFLib documentation:
DESCRIPTION
cbf_get_diffrn_id sets *diffrn_id to point to the ASCII value of the
"diffrn.id " entry. cbf_require_diffrn_id also sets *diffrn_id to
point to the ASCII value of the "diffrn.id " entry, but, if the
"diffrn.id " entry does not exist, it sets the value in the CBF and
in*diffrn_id to the character string given by default_id, creating
the category and column is necessary.
The diffrn_id will be valid as long as the item exists and has not
been set to a new value.
The diffrn_id must not be modified by the program in any way.
ARGUMENTS
handle CBF handle. diffrn_id Pointer to the destination
value pointer. default_id Character string default value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_diffrn_id(self)
def get_axis_rotation(self, axis_id):
r"""
Returns : Float
*args : String axis_id
C prototype: int cbf_get_axis_rotation (cbf_handle handle,
const char *axis_id, double *rotation);
CBFLib documentation:
DESCRIPTION
cbf_count_axis_ancestors sets ancestors to the number of ancestors of
axis axis_id. cbf_get_axis_ancestor sets *ancestor to the ancestor
axis of index ancestor_index of axis axis_id, starting with axis_id
for ancestor_index 0.
cbf_get_axis_depends_on sets *depends_on to the immediate ancestor of
axis_id or to ". " if there is no such ancestor.
cbf_get_axis_equipment sets *equipment to the equipment of axis_id or
to ". " if there is no such equipment.
cbf_get_axis_equipment_component sets *equipment_component to the
equipment_component of axis_id or to ". " if there is no such
equipment_component.
cbf_get_axis_offset sets *offset1, *offset2 and *offset3 to the
components of the ofset of axis_id.
cbf_get_axis_rotation sets rotation to the rotation of axis_id or to
0 if there is no such rotation. cbf_get_axis_rotation_axis sets
*rotation_axis to the rotation_axis of axis_id or to ". " if there
is no such rotation_axis.
cbf_get_axis_setting sets *start and *increment to the corresponding
values of the axis axis_id. Any of the destination pointers may be
NULL.
cbf_get_axis_type sets axis_type to the type of axis_id.
cbf_get_axis_vector sets *vector1, *vector2 and *vector3 to the
components of the vector of axis_id.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any
value other than 0 is invalid. axis_id Axis id.
ancestor_index Integer index of the desired ancestor, starting
with 0 for the current axis_id. ancestor Pointer to
destination ancestor name pointer. depends_on Pointer to
destination depends_on name pointer. equipment Pointer to
destination equipment name pointer. equipment_component Pointer to
destination equipment_component name pointer. offset1
Pointer to destination first offset component value. offset2
Pointer to destination second offset component value. offset3
Pointer to destination third offset component value.
rotation Pointer to destination rotation value.
rotation_axis Pointer to destination rotation_axisn name
pointer. start Pointer to the destination start
value. increment Pointer to the destination increment
value. type Pointer to destination axis type of type
. vector1 Pointer to destination first vector component
value. vector2 Pointer to destination second vector
component value. vector3 Pointer to destination third
vector component value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_rotation(self, axis_id)
def find_datablock(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_find_datablock (cbf_handle handle,
const char *datablockname);
CBFLib documentation:
DESCRIPTION
cbf_find_datablock makes the data block with name datablockname the
current data block.
The comparison is case-insensitive.
If the data block does not exist, the function returns CBF_NOTFOUND.
The current category becomes undefined.
ARGUMENTS
handle CBF handle. datablockname The name of the data
block to find.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_find_datablock(self, arg)
def get_polarization(self):
r"""
Returns : float polarizn_source_ratio,float polarizn_source_norm
*args :
C prototype: int cbf_get_polarization (cbf_handle handle,
double *polarizn_source_ratio,
double *polarizn_source_norm);
CBFLib documentation:
DESCRIPTION
cbf_get_polarization sets *polarizn_source_ratio and
*polarizn_source_norm to the corresponding source polarization
parameters.
Either destination pointer may be NULL.
ARGUMENTS
handle CBF handle. polarizn_source_ratio Pointer
to the destination polarizn_source_ratio. polarizn_source_norm
Pointer to the destination polarizn_source_norm.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_polarization(self)
def select_category(self, arg):
r"""
Returns :
*args : Integer
C prototype: int cbf_select_category (cbf_handle handle,
unsigned int category);
CBFLib documentation:
DESCRIPTION
cbf_select_category selects category number category in the current
data block as the current category.
The first category is number 0.
The current column and row become undefined.
If the category does not exist, the function returns CBF_NOTFOUND.
ARGUMENTS
handle CBF handle. category Number of the category to select.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_select_category(self, arg)
def get_pixel_size_fs(self, element_number, axis_number):
r"""
Returns : Float pixel_size
*args : Int element_number,Int axis_number
C prototype: int cbf_get_pixel_size_fs(cbf_handle handle,
unsigned int element_number, int axis_number,
double *psize);
CBFLib documentation:
DESCRIPTION
cbf_get_pixel_size and cbf_get_pixel_size_sf set *psize to point to
the double value in millimeters of the axis axis_number of the
detector element element_number. The axis_number is numbered from 1,
starting with the slowest axis. cbf_get_pixel_size_fs sets *psize to
point to the double value in millimeters of the axis axis_number of
the detector element element_number. The axis_number is numbered from
1, starting with the fastest axis.
If a negative axis number is given, the order of axes is reversed, so
that -1 specifies the slowest axis for cbf_get_pixel_size_fs and the
fastest axis for cbf_get_pixel_size_sf.
If the pixel size is not given explcitly in the "array_element_size
" category, the function returns CBF_NOTFOUND.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. axis_number The number of the
axis, starting from 1 for the fastest for cbf_get_pixel_size and
cbf_get_pixel_size_fs and the slowest for cbf_get_pixel_size_sf.
psize Pointer to the destination pixel size.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_pixel_size_fs(self, element_number, axis_number)
def get_axis_poise(self, ratio, axis_id, frame_id):
r"""
Returns : Float vector1,Float vector2,Float vector3,Float offset1,Float offset2,
Float offset3,Float angle
*args : Float ratio,String axis_id,String frame_id
C prototype: int cbf_get_axis_poise(cbf_handle handle, double ratio,
double * vector1, double * vector2, double * vector3,
double * offset1, double * offset2, double * offset3,
double * angle, const char * axis_id,
const char * frame_id);
CBFLib documentation:
DESCRIPTION
cbf_get_axis_poise sets vector1, vector2, vector3 to point to the
components of the axis vector for axis axis_id, offset1, offset2,
offset3 to point to the components of the axis base offset vector for
axis axis_id, and angle to point to the angle of rotation of axis
axis_id after application of the axis settings for frame frame_id,
using ratio, a value between 0 and 1, indicating how far into the
internal motion in the frame to go. If frame_id is the string ".
", the first frame found is used. If there is more than one frame,
which frame will be found is indeterminate. If frame_id is NULL, the
overall setting for the scan are used, rather than those for any
particular frame. The vector and offset reported are the reference
vector and offset of the axis axis_id transformed by application of
all motions of the axes on which axis_id depends.
cbf_get_goniometer_poise vector1, vector2, vector3 to point to the
components of the axis vector for the goniometer axis, offset1,
offset2, offset3 to point to the components of the axis base offset
vector for the goniometer axis, and angle to point to the angle of
rotation of the goniometer axis after application of all axis
settings in the goniometer deriving the vector, offset and angle from
the resulting matrix. Calculation of the vector is indeterminate if
the angle is zero.
cbf_get_axis_reference_poise sets vector1, vector2, vector3 to point
to the components of the axis vector for axis axis_id, offset1,
offset2, offset3 to point to the components of the axis base offset
vector for axis axis_id unmodified by axis rotations. Any of the
pointers may be specified as NULL.
ARGUMENTS
handle CBF handle. ratio A number between 0 and 1
indication how far into the frame to go vector1 Pointer to the
first component of the axis vector vector2 Pointer to the second
component of the axis vector vector3 Pointer to the third
component of the axis vector offset1 Pointer to the first
component of the axis offset offset2 Pointer to the second
component of the axis offset offset3 Pointer to the third
component of the axis offset angle Pointer to the rotation
angle axis_id The specified axis frame_id The specified
frame positioner CBF goniometer
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_poise(self, ratio, axis_id, frame_id)
def read_file(self, filename, headers):
r"""
Returns :
*args : String filename,Integer headers
C prototype: int cbf_read_file (cbf_handle handle, FILE *file, int flags);
CBFLib documentation:
DESCRIPTION
cbf_read_file reads the CBF or CIF file file into the CBF object
specified by handle, using the CIF 1.0 convention of 80 character
lines. cbf_read_widefile reads the CBF or CIF file file into the CBF
object specified by handle, using the CIF 1.1 convention of 2048
character lines. A warning is issued to stderr for ascii lines over
the limit. No test is performed on binary sections.
Validation is performed in three ways levels: during the lexical
scan, during the parse, and, if a dictionary was converted, against
the value types, value enumerations, categories and parent-child
relationships specified in the dictionary.
flags controls the interpretation of binary section headers, the
parsing of brackets constructs and the parsing of treble-quoted
strings.
MSG_DIGEST: Instructs CBFlib to check that the digest
of the binary section matches any header digest value. If the digests
do not match, the call will return CBF_FORMAT. This evaluation and
comparison is delayed (a "lazy " evaluation) to ensure maximal
processing efficiency. If an immediately evaluation is required, see
MSG_DIGESTNOW, below. MSG_DIGESTNOW: Instructs CBFlib to
check that the digest of the binary section matches any header
digeste value. If the digests do not match, the call will return
CBF_FORMAT. This evaluation and comparison is performed during
initial parsing of the section to ensure timely error reporting at
the expense of processing efficiency. If a more efficient delayed (
"lazy ") evaluation is required, see MSG_DIGEST, above.
MSG_DIGESTWARN: Instructs CBFlib to check that the digest
of the binary section matches any header digeste value. If the
digests do not match, a warning message will be sent to stderr, but
processing will attempt to continue. This evaluation and comparison
is first performed during initial parsing of the section to ensure
timely error reporting at the expense of processing efficiency. An
mismatch of the message digest usually indicates a serious error, but
it is sometimes worth continuing processing to try to isolate the
cause of the error. Use this option with caution. MSG_NODIGEST:
Do not check the digest (default). PARSE_BRACKETS:
Accept DDLm bracket-delimited [item,item,...item] or
{item,item,...item} or (item,item,...item) constructs as valid,
stripping non-quoted embedded whitespace and comments. These
constructs may span multiple lines. PARSE_LIBERAL_BRACKETS: Accept
DDLm bracket-delimited [item,item,...item] or {item,item,...item} or
(item,item,...item) constructs as valid, stripping embedded
non-quoted, non-separating whitespace and comments. These constructs
may span multiple lines. In this case, whitespace may be used as an
alternative to the comma. PARSE_TRIPLE_QUOTES: Accept DDLm
triple-quoted " " "item,item,...item " " " or
'''item,item,...item''' constructs as valid, stripping embedded
whitespace and comments. These constructs may span multiple lines. If
this flag is set, then ''' will not be interpreted as a quoted
apoptrophe and " " " will not be interpreted as a quoted double
quote mark and PARSE_NOBRACKETS: Do not accept DDLm
bracket-delimited [item,item,...item] or {item,item,...item} or
(item,item,...item) constructs as valid, stripping non-quoted
embedded whitespace and comments. These constructs may span multiple
lines. PARSE_NOTRIPLE_QUOTES: No not accept DDLm triple-quoted "
" "item,item,...item " " " or '''item,item,...item''' constructs
as valid, stripping embedded whitespace and comments. These
constructs may span multiple lines. If this flag is set, then '''
will be interpreted as a quoted apostrophe and " " " will be
interpreted as a quoted double quote mark.
CBFlib defers reading binary sections as long as possible. In the
current version of CBFlib, this means that:
1. The file must be a random-access file opened in binary mode (fopen
( ,
"""
return _py2cbf.cbf_handle_struct_read_file(self, filename, headers)
def datablock_name(self):
r"""
Returns :
*args : string
C prototype: int cbf_datablock_name (cbf_handle handle,
const char **datablockname);
CBFLib documentation:
DESCRIPTION
cbf_datablock_name sets *datablockname to point to the name of the
current data block.
The data block name will be valid as long as the data block exists
and has not been renamed.
The name must not be modified by the program in any way.
ARGUMENTS
handle CBF handle. datablockname Pointer to the
destination data block name pointer.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_datablock_name(self)
def set_realarray_wdims(self, compression, binary_id, data, elsize, elements, bo, dimfast, dimmid, dimslow, padding):
r"""
Returns :
*args : int compression,int binary_id,(binary) String data,int elsize,
int elements,String byteorder,int dimfast,int dimmid,int dimslow,
int padding
C prototype: int cbf_set_realarray_wdims (cbf_handle handle,
unsigned int compression, int binary_id, void *array,
size_t elsize, size_t elements, const char *byteorder,
size_t dimfast, size_t dimmid, size_t dimslow,
size_t padding);
CBFLib documentation:
DESCRIPTION
cbf_set_integerarray sets the binary value of the item at the current
column and row to an integer array. The array consists of elements
elements of elsize bytes each, starting at array. The elements are
signed if elsigned is non-0 and unsigned otherwise. binary_id is the
binary section identifier. cbf_set_realarray sets the binary value of
the item at the current column and row to an integer array. The array
consists of elements elements of elsize bytes each, starting at
array. binary_id is the binary section identifier.
The cbf_set_integerarray_wdims, cbf_set_integerarray_wdims_fs,
cbf_set_integerarray_wdims_sf, cbf_set_realarray_wdims,
cbf_set_realarray_wdims_fs and cbf_set_realarray_wdims_sf variants
allow the data header values of byteorder, dimfast, dimmid, dimslow
and padding to be set to the data byte order, the fastest, second
fastest and third fastest array dimensions and the size in byte of
the post data padding to be used.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
NOTE: This scheme is by far the slowest of the four and uses much
more disk space. It is intended for routine use with small arrays
only. With large arrays (like images) it should be used only for
debugging.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned), for cbf_set_integerarray, or IEEE doubles or
floats for cbf_set_realarray. If elsize is not equal to sizeof
(char), sizeof (short) or sizeof (int), the function returns
CBF_ARGUMENT.
ARGUMENTS
handle CBF handle. compression Compression method to use.
binary_id Integer binary identifier. array Pointer to the
source array. elsize Size in bytes of each source array
element. elsigned Set to non-0 if the source array elements are
signed. elements The number of elements in the array
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_realarray_wdims(self, compression, binary_id, data, elsize, elements, bo, dimfast, dimmid, dimslow, padding)
def construct_reference_detector(self, element_number):
r"""
Returns : pycbf detector object
*args : Integer element_number
C prototype: int cbf_construct_reference_detector (cbf_handle handle,
cbf_detector *detector, unsigned int element_number);
CBFLib documentation:
DESCRIPTION
cbf_construct_detector constructs a detector object for detector
element number element_number using the description in the CBF object
handle and initialises the detector handle *detector.
cbf_construct_reference_detector constructs a detector object for
detector element number element_number using the description in the
CBF object handle and initialises the detector handle *detector using
the reference settings of the axes. cbf_require_reference_detector is
similar, but try to force the creations of missing intermediate
categories needed to construct a detector object.
ARGUMENTS
handle CBF handle. detector Pointer to the
destination detector handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_construct_reference_detector(self, element_number)
def get_real_3d_image_fs_as_string(self, element_number, elsize, ndimfast, ndimmid, ndimslow):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int ndimfast,int ndimmid,int ndimslow
C prototype: int cbf_get_real_3d_image_fs (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
void *array, size_t elsize, size_t ndimfast,
size_t ndimmid, size_t ndimslow);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_real_3d_image_fs_as_string(self, element_number, elsize, ndimfast, ndimmid, ndimslow)
def rewind_row(self):
r"""
Returns :
*args :
C prototype: int cbf_rewind_row (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_rewind_row makes the first row in the current category the
current row.
If there are no rows, the function returns CBF_NOTFOUND.
The current column is not affected.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_rewind_row(self)
def get_axis_setting(self, axis_id):
r"""
Returns : Float start,Float increment
*args : String axis_id
C prototype: int cbf_get_axis_setting (cbf_handle handle,
unsigned int reserved, const char *axis_id, double *start,
double *increment);
CBFLib documentation:
DESCRIPTION
cbf_count_axis_ancestors sets ancestors to the number of ancestors of
axis axis_id. cbf_get_axis_ancestor sets *ancestor to the ancestor
axis of index ancestor_index of axis axis_id, starting with axis_id
for ancestor_index 0.
cbf_get_axis_depends_on sets *depends_on to the immediate ancestor of
axis_id or to ". " if there is no such ancestor.
cbf_get_axis_equipment sets *equipment to the equipment of axis_id or
to ". " if there is no such equipment.
cbf_get_axis_equipment_component sets *equipment_component to the
equipment_component of axis_id or to ". " if there is no such
equipment_component.
cbf_get_axis_offset sets *offset1, *offset2 and *offset3 to the
components of the ofset of axis_id.
cbf_get_axis_rotation sets rotation to the rotation of axis_id or to
0 if there is no such rotation. cbf_get_axis_rotation_axis sets
*rotation_axis to the rotation_axis of axis_id or to ". " if there
is no such rotation_axis.
cbf_get_axis_setting sets *start and *increment to the corresponding
values of the axis axis_id. Any of the destination pointers may be
NULL.
cbf_get_axis_type sets axis_type to the type of axis_id.
cbf_get_axis_vector sets *vector1, *vector2 and *vector3 to the
components of the vector of axis_id.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any
value other than 0 is invalid. axis_id Axis id.
ancestor_index Integer index of the desired ancestor, starting
with 0 for the current axis_id. ancestor Pointer to
destination ancestor name pointer. depends_on Pointer to
destination depends_on name pointer. equipment Pointer to
destination equipment name pointer. equipment_component Pointer to
destination equipment_component name pointer. offset1
Pointer to destination first offset component value. offset2
Pointer to destination second offset component value. offset3
Pointer to destination third offset component value.
rotation Pointer to destination rotation value.
rotation_axis Pointer to destination rotation_axisn name
pointer. start Pointer to the destination start
value. increment Pointer to the destination increment
value. type Pointer to destination axis type of type
. vector1 Pointer to destination first vector component
value. vector2 Pointer to destination second vector
component value. vector3 Pointer to destination third
vector component value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_setting(self, axis_id)
def require_column(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_require_column (cbf_handle handle,
const char *columnname);
CBFLib documentation:
DESCRIPTION
cbf_require_column makes the columns in the current category with
name columnname the current column, if it exists, or creates it if it
does not.
The comparison is case-insensitive.
The current row is not affected.
ARGUMENTS
handle CBF handle. columnname The name of column to find.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_require_column(self, arg)
def get_timestamp(self):
r"""
Returns : Float time,Integer timezone
*args :
C prototype: int cbf_get_timestamp (cbf_handle handle, unsigned int reserved,
double *time, int *timezone);
CBFLib documentation:
DESCRIPTION
cbf_get_timestamp sets *time to the collection timestamp in seconds
since January 1 1970. *timezone is set to timezone difference from
UTC in minutes. The parameter reserved is presently unused and should
be set to 0.
Either of the destination pointers may be NULL.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other than 0 is
invalid. time Pointer to the destination collection timestamp.
timezone Pointer to the destination timezone difference.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_timestamp(self)
def find_nextrow(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_find_nextrow (cbf_handle handle, const char *value);
CBFLib documentation:
DESCRIPTION
cbf_find_nextrow makes the makes the next row in the current column
with value value the current row. The search starts from the row
following the last row found with cbf_find_row or cbf_find_nextrow,
or from the current row if the current row was defined using any
other function.
The comparison is case-sensitive.
If no more matching rows exist, the function returns CBF_NOTFOUND.
The current column is not affected.
ARGUMENTS
handle CBF handle. value the value to search for.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_find_nextrow(self, arg)
def get_axis_equipment_component(self, axis_id):
r"""
Returns : String
*args : String axis_id
C prototype: int cbf_get_axis_equipment_component (cbf_handle handle,
const char *axis_id, const char * *equipment_component);
CBFLib documentation:
DESCRIPTION
cbf_count_axis_ancestors sets ancestors to the number of ancestors of
axis axis_id. cbf_get_axis_ancestor sets *ancestor to the ancestor
axis of index ancestor_index of axis axis_id, starting with axis_id
for ancestor_index 0.
cbf_get_axis_depends_on sets *depends_on to the immediate ancestor of
axis_id or to ". " if there is no such ancestor.
cbf_get_axis_equipment sets *equipment to the equipment of axis_id or
to ". " if there is no such equipment.
cbf_get_axis_equipment_component sets *equipment_component to the
equipment_component of axis_id or to ". " if there is no such
equipment_component.
cbf_get_axis_offset sets *offset1, *offset2 and *offset3 to the
components of the ofset of axis_id.
cbf_get_axis_rotation sets rotation to the rotation of axis_id or to
0 if there is no such rotation. cbf_get_axis_rotation_axis sets
*rotation_axis to the rotation_axis of axis_id or to ". " if there
is no such rotation_axis.
cbf_get_axis_setting sets *start and *increment to the corresponding
values of the axis axis_id. Any of the destination pointers may be
NULL.
cbf_get_axis_type sets axis_type to the type of axis_id.
cbf_get_axis_vector sets *vector1, *vector2 and *vector3 to the
components of the vector of axis_id.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any
value other than 0 is invalid. axis_id Axis id.
ancestor_index Integer index of the desired ancestor, starting
with 0 for the current axis_id. ancestor Pointer to
destination ancestor name pointer. depends_on Pointer to
destination depends_on name pointer. equipment Pointer to
destination equipment name pointer. equipment_component Pointer to
destination equipment_component name pointer. offset1
Pointer to destination first offset component value. offset2
Pointer to destination second offset component value. offset3
Pointer to destination third offset component value.
rotation Pointer to destination rotation value.
rotation_axis Pointer to destination rotation_axisn name
pointer. start Pointer to the destination start
value. increment Pointer to the destination increment
value. type Pointer to destination axis type of type
. vector1 Pointer to destination first vector component
value. vector2 Pointer to destination second vector
component value. vector3 Pointer to destination third
vector component value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_equipment_component(self, axis_id)
def get_realarrayparameters_wdims_sf(self):
r"""
Returns : int compression,int binary_id,int elsize,int elements,char **bo,
int *bolen,int dimslow,int dimmid,int dimfast,int padding
*args :
C prototype: int cbf_get_realarrayparameters_wdims_sf (cbf_handle handle,
unsigned int *compression, int *binary_id, size_t *elsize,
size_t *elements, const char **byteorder, size_t *dimslow,
size_t *dimmid, size_t *dimfast, size_t *padding);
CBFLib documentation:
DESCRIPTION
cbf_get_integerarrayparameters sets *compression, *binary_id,
*elsize, *elsigned, *elunsigned, *elements, *minelement and
*maxelement to values read from the binary value of the item at the
current column and row. This provides all the arguments needed for a
subsequent call to cbf_set_integerarray, if a copy of the array is to
be made into another CIF or CBF. cbf_get_realarrayparameters sets
*compression, *binary_id, *elsize, *elements to values read from the
binary value of the item at the current column and row. This provides
all the arguments needed for a subsequent call to cbf_set_realarray,
if a copy of the arry is to be made into another CIF or CBF.
The variants cbf_get_integerarrayparameters_wdims,
cbf_get_integerarrayparameters_wdims_fs,
cbf_get_integerarrayparameters_wdims_sf,
cbf_get_realarrayparameters_wdims,
cbf_get_realarrayparameters_wdims_fs,
cbf_get_realarrayparameters_wdims_sf set **byteorder, *dimfast,
*dimmid, *dimslow, and *padding as well, providing the additional
parameters needed for a subsequent call to cbf_set_integerarray_wdims
or cbf_set_realarray_wdims.
The value returned in *byteorder is a pointer either to the string
"little_endian " or to the string "big_endian ". This should be
the byte order of the data, not necessarily of the host machine. No
attempt should be made to modify this string. At this time only
"little_endian " will be returned.
The values returned in *dimfast, *dimmid and *dimslow are the sizes
of the fastest changing, second fastest changing and third fastest
changing dimensions of the array, if specified, or zero, if not
specified.
The value returned in *padding is the size of the post-data padding,
if any and if specified in the data header. The value is given as a
count of octets.
If the value is not binary, the function returns CBF_ASCII.
ARGUMENTS
handle CBF handle. compression Compression method used.
elsize Size in bytes of each array element. binary_id
Pointer to the destination integer binary identifier. elsigned
Pointer to an integer. Set to 1 if the elements can be read as signed
integers. elunsigned Pointer to an integer. Set to 1 if the
elements can be read as unsigned integers. elements Pointer to
the destination number of elements. minelement Pointer to the
destination smallest element. maxelement Pointer to the
destination largest element. byteorder Pointer to the destination
byte order. dimfast Pointer to the destination fastest
dimension. dimmid Pointer to the destination second fastest
dimension. dimslow Pointer to the destination third fastest
dimension. padding Pointer to the destination padding size.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_realarrayparameters_wdims_sf(self)
def reset_datablock(self):
r"""
Returns :
*args :
C prototype: int cbf_reset_datablock (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_reset_datablock deletes all categories from the current data
block. cbf_reset_saveframe deletes all categories from the current
save frame.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_reset_datablock(self)
def set_3d_image_fs(self, element_number, compression, data, elsize, elsign, ndimfast, ndimmid, ndimslow):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int elsign,int dimfast,int dimmid,int dimslow
C prototype: int cbf_set_3d_image_fs(cbf_handle handle, unsigned int reserved,
unsigned int element_number, unsigned int compression,
void *array, size_t elsize, int elsign, size_t ndimfast,
size_t ndimmid, size_t ndimslow);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_3d_image_fs(self, element_number, compression, data, elsize, elsign, ndimfast, ndimmid, ndimslow)
def set_saveframename(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_set_saveframename (cbf_handle handle,
const char *saveframename);
CBFLib documentation:
DESCRIPTION
cbf_set_datablockname changes the name of the current data block to
datablockname. cbf_set_saveframename changes the name of the current
save frame to saveframename.
If a data block or save frame with this name already exists
(comparison is case-insensitive), the function returns CBF_IDENTICAL.
ARGUMENTS
handle CBF handle. datablockname The new data block name.
saveframename The new save frame name.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_saveframename(self, arg)
def require_integervalue(self, thedefault):
r"""
Returns : Int number
*args : Int thedefault
C prototype: int cbf_require_integervalue (cbf_handle handle, int *number,
int defaultvalue);
CBFLib documentation:
DESCRIPTION
cbf_get_integervalue sets *number to the value of the ASCII item at
the current column and row interpreted as a decimal integer.
cbf_require_integervalue sets *number to the value of the ASCII item
at the current column and row interpreted as a decimal integer,
setting it to defaultvalue if necessary.
If the value is not ASCII, the function returns CBF_BINARY.
ARGUMENTS
handle CBF handle. number pointer to the number.
defaultvalue default number value.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_require_integervalue(self, thedefault)
def get_integerarrayparameters(self):
r"""
Returns : int compression,int binary_id,int elsize,int elsigned,int elunsigned,
int elements,int minelement,int maxelement
*args :
C prototype: int cbf_get_integerarrayparameters (cbf_handle handle,
unsigned int *compression, int *binary_id, size_t *elsize,
int *elsigned, int *elunsigned, size_t *elements,
int *minelement, int *maxelement);
CBFLib documentation:
DESCRIPTION
cbf_get_integerarrayparameters sets *compression, *binary_id,
*elsize, *elsigned, *elunsigned, *elements, *minelement and
*maxelement to values read from the binary value of the item at the
current column and row. This provides all the arguments needed for a
subsequent call to cbf_set_integerarray, if a copy of the array is to
be made into another CIF or CBF. cbf_get_realarrayparameters sets
*compression, *binary_id, *elsize, *elements to values read from the
binary value of the item at the current column and row. This provides
all the arguments needed for a subsequent call to cbf_set_realarray,
if a copy of the arry is to be made into another CIF or CBF.
The variants cbf_get_integerarrayparameters_wdims,
cbf_get_integerarrayparameters_wdims_fs,
cbf_get_integerarrayparameters_wdims_sf,
cbf_get_realarrayparameters_wdims,
cbf_get_realarrayparameters_wdims_fs,
cbf_get_realarrayparameters_wdims_sf set **byteorder, *dimfast,
*dimmid, *dimslow, and *padding as well, providing the additional
parameters needed for a subsequent call to cbf_set_integerarray_wdims
or cbf_set_realarray_wdims.
The value returned in *byteorder is a pointer either to the string
"little_endian " or to the string "big_endian ". This should be
the byte order of the data, not necessarily of the host machine. No
attempt should be made to modify this string. At this time only
"little_endian " will be returned.
The values returned in *dimfast, *dimmid and *dimslow are the sizes
of the fastest changing, second fastest changing and third fastest
changing dimensions of the array, if specified, or zero, if not
specified.
The value returned in *padding is the size of the post-data padding,
if any and if specified in the data header. The value is given as a
count of octets.
If the value is not binary, the function returns CBF_ASCII.
ARGUMENTS
handle CBF handle. compression Compression method used.
elsize Size in bytes of each array element. binary_id
Pointer to the destination integer binary identifier. elsigned
Pointer to an integer. Set to 1 if the elements can be read as signed
integers. elunsigned Pointer to an integer. Set to 1 if the
elements can be read as unsigned integers. elements Pointer to
the destination number of elements. minelement Pointer to the
destination smallest element. maxelement Pointer to the
destination largest element. byteorder Pointer to the destination
byte order. dimfast Pointer to the destination fastest
dimension. dimmid Pointer to the destination second fastest
dimension. dimslow Pointer to the destination third fastest
dimension. padding Pointer to the destination padding size.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_integerarrayparameters(self)
def set_real_3d_image_sf(self, element_number, compression, data, elsize, ndimslow, ndimmid, ndimfast):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int dimslow,int dimmid,int dimfast
C prototype: int cbf_set_real_3d_image_sf(cbf_handle handle,
unsigned int reserved, unsigned int element_number,
unsigned int compression, void *array,size_t elsize,
size_t ndimslow, size_t ndimmid, size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_real_3d_image_sf(self, element_number, compression, data, elsize, ndimslow, ndimmid, ndimfast)
def write_file(self, filename, ciforcbf, headers, encoding):
r"""
Returns :
*args : String filename,Integer ciforcbf,Integer Headers,Integer encoding
C prototype: int cbf_write_file (cbf_handle handle, FILE *file, int readable,
int ciforcbf, int flags, int encoding);
CBFLib documentation:
DESCRIPTION
cbf_write_file writes the CBF object specified by handle into the
file file, following CIF 1.0 conventions of 80 character lines.
cbf_write_widefile writes the CBF object specified by handle into the
file file, following CIF 1.1 conventions of 2048 character lines. A
warning is issued to stderr for ascii lines over the limit, and an
attempt is made to fold lines to fit. No test is performed on binary
sections.
If a dictionary has been provided, aliases will be applied on output.
Unlike cbf_read_file, the file does not have to be random-access.
If the file is random-access and readable, readable can be set to
non-0 to indicate to CBFlib that the file can be used as a buffer to
conserve disk space. If the file is not random-access or not
readable, readable must be 0.
"""
return _py2cbf.cbf_handle_struct_write_file(self, filename, ciforcbf, headers, encoding)
def set_divergence(self, div_x_source, div_y_source, div_x_y_source):
r"""
Returns :
*args : Float div_x_source,Float div_y_source,Float div_x_y_source
C prototype: int cbf_set_divergence (cbf_handle handle, double div_x_source,
double div_y_source, double div_x_y_source);
CBFLib documentation:
DESCRIPTION
cbf_set_divergence sets the source divergence parameters to the
values specified by div_x_source, div_y_source and div_x_y_source.
ARGUMENTS
handle CBF handle. div_x_source New value of
div_x_source. div_y_source New value of div_y_source.
div_x_y_source New value of div_x_y_source.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_divergence(self, div_x_source, div_y_source, div_x_y_source)
def remove_datablock(self):
r"""
Returns :
*args :
C prototype: int cbf_remove_datablock (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_remove_datablock deletes the current data block.
cbf_remove_saveframe deletes the current save frame.
The current data block becomes undefined.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_remove_datablock(self)
def count_elements(self):
r"""
Returns : Integer
*args :
C prototype: int cbf_count_elements (cbf_handle handle,
unsigned int *elements);
CBFLib documentation:
DESCRIPTION
cbf_count_elements sets *elements to the number of detector elements.
ARGUMENTS
handle CBF handle. elements Pointer to the destination count.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_count_elements(self)
def set_image_fs(self, element_number, compression, data, elsize, elsign, ndimfast, ndimslow):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int elsign,int dimfast,int dimslow
C prototype: int cbf_set_image_fs(cbf_handle handle, unsigned int reserved,
unsigned int element_number, unsigned int compression,
void *array, size_t elsize, int elsign, size_t ndimfast,
size_t ndimslow);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_image_fs(self, element_number, compression, data, elsize, elsign, ndimfast, ndimslow)
def require_reference_detector(self, element_number):
r"""
Returns : pycbf detector object
*args : Integer element_number
C prototype: int cbf_require_reference_detector (cbf_handle handle,
cbf_detector *detector, unsigned int element_number);
CBFLib documentation:
DESCRIPTION
cbf_construct_detector constructs a detector object for detector
element number element_number using the description in the CBF object
handle and initialises the detector handle *detector.
cbf_construct_reference_detector constructs a detector object for
detector element number element_number using the description in the
CBF object handle and initialises the detector handle *detector using
the reference settings of the axes. cbf_require_reference_detector is
similar, but try to force the creations of missing intermediate
categories needed to construct a detector object.
ARGUMENTS
handle CBF handle. detector Pointer to the
destination detector handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_require_reference_detector(self, element_number)
def next_category(self):
r"""
Returns :
*args :
C prototype: int cbf_next_category (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_next_category makes the category following the current category
in the current data block the current category.
If there are no more categories, the function returns CBF_NOTFOUND.
The current column and row become undefined.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_next_category(self)
def set_diffrn_id(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_set_diffrn_id (cbf_handle handle, const char *diffrn_id);
CBFLib documentation:
DESCRIPTION
cbf_set_diffrn_id sets the "diffrn.id " entry of the current
datablock to the ASCII value diffrn_id.
This function also changes corresponding "diffrn_id " entries in
the "diffrn_source ", "diffrn_radiation ", "diffrn_detector
" and "diffrn_measurement " categories.
ARGUMENTS
handle CBF handle. diffrn_id ASCII value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_diffrn_id(self, arg)
def set_timestamp(self, time, timezone, precision):
r"""
Returns :
*args : Float time,Integer timezone,Float precision
C prototype: int cbf_set_timestamp (cbf_handle handle, unsigned int reserved,
double time, int timezone, double precision);
CBFLib documentation:
DESCRIPTION
cbf_set_timestamp sets the collection timestamp in seconds since
January 1 1970 to the value specified by time. The timezone
difference from UTC
"""
return _py2cbf.cbf_handle_struct_set_timestamp(self, time, timezone, precision)
def get_orientation_matrix(self):
r"""
Returns : Float matrix_0,Float matrix_1,Float matrix_2,Float matrix_3,
Float matrix_4,Float matrix_5,Float matrix_6,Float matrix_7,
Float matrix_8
*args :
C prototype: int cbf_get_orientation_matrix (cbf_handle handle,
double ub_matrix[9]);
CBFLib documentation:
DESCRIPTION
cbf_get_orientation_matrix sets ub_matrix to point to the array of
orientation matrix entries in the "diffrn " category in the order
of columns:
"UB[1][1] " "UB[1][2] " "UB[1][3] " "UB[2][1] "
"UB[2][2] " "UB[2][3] " "UB[3][1] " "UB[3][2] "
"UB[3][3] "
cbf_set_orientation_matrix sets the values in the "diffrn "
category to the values pointed to by ub_matrix.
ARGUMENTS
handle CBF handle. ub_matrix Source or destination array of 9
doubles giving the orientation matrix parameters.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_orientation_matrix(self)
def get_image_size_fs(self, element_number):
r"""
Returns : size_t ndimfast,size_t ndimslow
*args : Integer element_number
C prototype: int cbf_get_image_size_fs (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
size_t *ndimfast, size_t *ndimslow);
CBFLib documentation:
DESCRIPTION
cbf_get_image_size, cbf_get_image_size_fs and cbf_get_image_size_sf
set *ndimslow and *ndimfast to the slow and fast dimensions of the
image array for element number element_number. If the array is
1-dimensional, *ndimslow will be set to the array size and *ndimfast
will be set to 1. If the array is 3-dimensional an error code will be
returned. cbf_get_3d_image_size, cbf_get_3d_image_size_fs and
cbf_get_3d_image_size_sf set *ndimslow, *ndimmid and *ndimfast to the
slowest, next fastest and fastest dimensions, respectively, of the 3D
image array for element number element_number. If the array is
1-dimensional, *ndimslow will be set to the array size and *ndimmid
and
"""
return _py2cbf.cbf_handle_struct_get_image_size_fs(self, element_number)
def get_divergence(self):
r"""
Returns : Float div_x_source,Float div_y_source,Float div_x_y_source
*args :
C prototype: int cbf_get_divergence (cbf_handle handle, double *div_x_source,
double *div_y_source, double *div_x_y_source);
CBFLib documentation:
DESCRIPTION
cbf_get_divergence sets *div_x_source, *div_y_source and
*div_x_y_source to the corresponding source divergence parameters.
Any of the destination pointers may be NULL.
ARGUMENTS
handle CBF handle. div_x_source Pointer to the
destination div_x_source. div_y_source Pointer to the destination
div_y_source. div_x_y_source Pointer to the destination
div_x_y_source.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_divergence(self)
def rewind_category(self):
r"""
Returns :
*args :
C prototype: int cbf_rewind_category (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_rewind_category makes the first category in the current data
block the current category. cbf_rewind_saveframe makes the first
saveframe in the current data block the current saveframe.
cbf_rewind_blockitem makes the first blockitem (category or
saveframe) in the current data block the current blockitem. The type
of the blockitem (CBF_CATEGORY or CBF_SAVEFRAME) is returned in type.
If there are no categories, saveframes or blockitems the function
returns CBF_NOTFOUND.
The current column and row become undefined.
ARGUMENTS
handle CBF handle. type CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_rewind_category(self)
def read_template(self, filename):
r"""
Returns :
*args : String filename
C prototype: int cbf_read_template (cbf_handle handle, FILE *file);
CBFLib documentation:
DESCRIPTION
cbf_read_template reads the CBF or CIF file file into the CBF object
specified by handle and selects the first datablock as the current
datablock.
ARGUMENTS
handle Pointer to a CBF handle. file Pointer to a file
descriptor.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_read_template(self, filename)
def select_row(self, arg):
r"""
Returns :
*args : Integer
C prototype: int cbf_select_row (cbf_handle handle, unsigned int row);
CBFLib documentation:
DESCRIPTION
cbf_select_row selects row number row in the current category as the
current row.
The first row is number 0.
The current column is not affected
If the row does not exist, the function returns CBF_NOTFOUND.
ARGUMENTS
handle CBF handle. row Number of the row to select.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_select_row(self, arg)
def get_image_fs_as_string(self, element_number, elsize, elsign, ndimfast, ndimslow):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int elsign,int ndimfast,int ndimslow
C prototype: int cbf_get_image_fs (cbf_handle handle, unsigned int reserved,
unsigned int element_number, void *array, size_t elsize,
int elsign, size_t ndimfast, size_t ndimslow);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_image_fs_as_string(self, element_number, elsize, elsign, ndimfast, ndimslow)
def get_image_size_sf(self, element_number):
r"""
Returns : size_t ndimslow,size_t ndimfast
*args : Integer element_number
C prototype: int cbf_get_image_size_sf (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
size_t *ndimslow, size_t *ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image_size, cbf_get_image_size_fs and cbf_get_image_size_sf
set *ndimslow and *ndimfast to the slow and fast dimensions of the
image array for element number element_number. If the array is
1-dimensional, *ndimslow will be set to the array size and *ndimfast
will be set to 1. If the array is 3-dimensional an error code will be
returned. cbf_get_3d_image_size, cbf_get_3d_image_size_fs and
cbf_get_3d_image_size_sf set *ndimslow, *ndimmid and *ndimfast to the
slowest, next fastest and fastest dimensions, respectively, of the 3D
image array for element number element_number. If the array is
1-dimensional, *ndimslow will be set to the array size and *ndimmid
and
"""
return _py2cbf.cbf_handle_struct_get_image_size_sf(self, element_number)
def get_real_image_fs_as_string(self, element_number, elsize, ndimfast, ndimslow):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int ndimfast,int ndimslow
C prototype: int cbf_get_real_image_fs (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
void *array, size_t elsize, size_t ndimfast,
size_t ndimslow);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_real_image_fs_as_string(self, element_number, elsize, ndimfast, ndimslow)
def count_columns(self):
r"""
Returns : Integer
*args :
C prototype: int cbf_count_columns (cbf_handle handle, unsigned int *columns);
CBFLib documentation:
DESCRIPTION
cbf_count_columns puts the number of columns in the current category
in *columns.
ARGUMENTS
handle CBF handle. columns Pointer to the destination column
count.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_count_columns(self)
def get_integerarrayparameters_wdims(self):
r"""
Returns : int compression,int binary_id,int elsize,int elsigned,int elunsigned,
int elements,int minelement,int maxelement,char **bo,int *bolen,
int dimfast,int dimmid,int dimslow,int padding
*args :
C prototype: int cbf_get_integerarrayparameters_wdims (cbf_handle handle,
unsigned int *compression, int *binary_id, size_t *elsize,
int *elsigned, int *elunsigned, size_t *elements,
int *minelement, int *maxelement, const char **byteorder,
size_t *dimfast, size_t *dimmid, size_t *dimslow,
size_t *padding);
CBFLib documentation:
DESCRIPTION
cbf_get_integerarrayparameters sets *compression, *binary_id,
*elsize, *elsigned, *elunsigned, *elements, *minelement and
*maxelement to values read from the binary value of the item at the
current column and row. This provides all the arguments needed for a
subsequent call to cbf_set_integerarray, if a copy of the array is to
be made into another CIF or CBF. cbf_get_realarrayparameters sets
*compression, *binary_id, *elsize, *elements to values read from the
binary value of the item at the current column and row. This provides
all the arguments needed for a subsequent call to cbf_set_realarray,
if a copy of the arry is to be made into another CIF or CBF.
The variants cbf_get_integerarrayparameters_wdims,
cbf_get_integerarrayparameters_wdims_fs,
cbf_get_integerarrayparameters_wdims_sf,
cbf_get_realarrayparameters_wdims,
cbf_get_realarrayparameters_wdims_fs,
cbf_get_realarrayparameters_wdims_sf set **byteorder, *dimfast,
*dimmid, *dimslow, and *padding as well, providing the additional
parameters needed for a subsequent call to cbf_set_integerarray_wdims
or cbf_set_realarray_wdims.
The value returned in *byteorder is a pointer either to the string
"little_endian " or to the string "big_endian ". This should be
the byte order of the data, not necessarily of the host machine. No
attempt should be made to modify this string. At this time only
"little_endian " will be returned.
The values returned in *dimfast, *dimmid and *dimslow are the sizes
of the fastest changing, second fastest changing and third fastest
changing dimensions of the array, if specified, or zero, if not
specified.
The value returned in *padding is the size of the post-data padding,
if any and if specified in the data header. The value is given as a
count of octets.
If the value is not binary, the function returns CBF_ASCII.
ARGUMENTS
handle CBF handle. compression Compression method used.
elsize Size in bytes of each array element. binary_id
Pointer to the destination integer binary identifier. elsigned
Pointer to an integer. Set to 1 if the elements can be read as signed
integers. elunsigned Pointer to an integer. Set to 1 if the
elements can be read as unsigned integers. elements Pointer to
the destination number of elements. minelement Pointer to the
destination smallest element. maxelement Pointer to the
destination largest element. byteorder Pointer to the destination
byte order. dimfast Pointer to the destination fastest
dimension. dimmid Pointer to the destination second fastest
dimension. dimslow Pointer to the destination third fastest
dimension. padding Pointer to the destination padding size.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_integerarrayparameters_wdims(self)
def get_gain(self, element_number):
r"""
Returns : Float gain,Float gain_esd
*args :
C prototype: int cbf_get_gain (cbf_handle handle, unsigned int element_number,
double *gain, double *gain_esd);
CBFLib documentation:
DESCRIPTION
cbf_get_gain sets *gain and *gain_esd to the corresponding gain
parameters for element number element_number.
Either of the destination pointers may be NULL.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. gain Pointer to the
destination gain. gain_esd Pointer to the destination
gain_esd.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_gain(self, element_number)
def new_saveframe(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_new_saveframe (cbf_handle handle,
const char *saveframename);
CBFLib documentation:
DESCRIPTION
cbf_new_datablock creates a new data block with name datablockname
and makes it the current data block. cbf_new_saveframe creates a new
save frame with name saveframename within the current data block and
makes the new save frame the current save frame.
If a data block or save frame with this name already exists, the
existing data block or save frame becomes the current data block or
save frame.
ARGUMENTS
handle CBF handle. datablockname The name of the new data
block. saveframename The name of the new save frame.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_new_saveframe(self, arg)
def set_polarization(self, polarizn_source_ratio, polarizn_source_norm):
r"""
Returns :
*args : Float polarizn_source_ratio,Float polarizn_source_norm
C prototype: int cbf_set_polarization (cbf_handle handle,
double polarizn_source_ratio,
double polarizn_source_norm);
CBFLib documentation:
DESCRIPTION
cbf_set_polarization sets the source polarization to the values
specified by polarizn_source_ratio and polarizn_source_norm.
ARGUMENTS
handle CBF handle. polarizn_source_ratio New value
of polarizn_source_ratio. polarizn_source_norm New value of
polarizn_source_norm.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_polarization(self, polarizn_source_ratio, polarizn_source_norm)
def set_real_3d_image(self, element_number, compression, data, elsize, ndimslow, ndimmid, ndimfast):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int dimslow,int dimmid,int dimfast
C prototype: int cbf_set_real_3d_image (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
unsigned int compression, void *array,size_t elsize,
size_t ndimslow, size_t ndimmid, size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_real_3d_image(self, element_number, compression, data, elsize, ndimslow, ndimmid, ndimfast)
def delete_row(self, arg):
r"""
Returns :
*args : Integer
C prototype: int cbf_delete_row (cbf_handle handle, unsigned int rownumber);
CBFLib documentation:
DESCRIPTION
cbf_delete_row deletes a row from the current category. Rows starting
from rownumber +1 are moved down by 1. If the current row was higher
than rownumber, or if the current row is the last row, it will also
move down by 1.
The row numbers start from 0.
ARGUMENTS
handle CBF handle. rownumber The number of the row to delete.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_delete_row(self, arg)
def column_name(self):
r"""
Returns :
*args : string
C prototype: int cbf_column_name (cbf_handle handle, const char **columnname);
CBFLib documentation:
DESCRIPTION
cbf_column_name sets *columnname to point to the name of the current
column of the current category.
The column name will be valid as long as the column exists.
The name must not be modified by the program in any way.
cbf_set_column_name sets the name of the current column to
newcolumnname
ARGUMENTS
handle CBF handle. columnname Pointer to the
destination column name pointer. newcolumnname New column name
pointer.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_column_name(self)
def remove_saveframe(self):
r"""
Returns :
*args :
C prototype: int cbf_remove_saveframe (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_remove_datablock deletes the current data block.
cbf_remove_saveframe deletes the current save frame.
The current data block becomes undefined.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_remove_saveframe(self)
def set_integerarray_wdims_sf(self, compression, binary_id, data, elsize, elsigned, elements, bo, dimslow, dimmid, dimfast, padding):
r"""
Returns :
*args : int compression,int binary_id,(binary) String data,int elsize,
int elsigned,int elements,String byteorder,int dimslow,int dimmid,
int dimfast,int padding
C prototype: int cbf_set_integerarray_wdims_sf (cbf_handle handle,
unsigned int compression, int binary_id, void *array,
size_t elsize, int elsigned, size_t elements,
const char *byteorder, size_t dimslow, size_t dimmid,
size_t dimfast, size_t padding);
CBFLib documentation:
DESCRIPTION
cbf_set_integerarray sets the binary value of the item at the current
column and row to an integer array. The array consists of elements
elements of elsize bytes each, starting at array. The elements are
signed if elsigned is non-0 and unsigned otherwise. binary_id is the
binary section identifier. cbf_set_realarray sets the binary value of
the item at the current column and row to an integer array. The array
consists of elements elements of elsize bytes each, starting at
array. binary_id is the binary section identifier.
The cbf_set_integerarray_wdims, cbf_set_integerarray_wdims_fs,
cbf_set_integerarray_wdims_sf, cbf_set_realarray_wdims,
cbf_set_realarray_wdims_fs and cbf_set_realarray_wdims_sf variants
allow the data header values of byteorder, dimfast, dimmid, dimslow
and padding to be set to the data byte order, the fastest, second
fastest and third fastest array dimensions and the size in byte of
the post data padding to be used.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
NOTE: This scheme is by far the slowest of the four and uses much
more disk space. It is intended for routine use with small arrays
only. With large arrays (like images) it should be used only for
debugging.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned), for cbf_set_integerarray, or IEEE doubles or
floats for cbf_set_realarray. If elsize is not equal to sizeof
(char), sizeof (short) or sizeof (int), the function returns
CBF_ARGUMENT.
ARGUMENTS
handle CBF handle. compression Compression method to use.
binary_id Integer binary identifier. array Pointer to the
source array. elsize Size in bytes of each source array
element. elsigned Set to non-0 if the source array elements are
signed. elements The number of elements in the array
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_integerarray_wdims_sf(self, compression, binary_id, data, elsize, elsigned, elements, bo, dimslow, dimmid, dimfast, padding)
def require_value(self, defaultvalue):
r"""
Returns : String Value
*args : String defaultvalue
C prototype: int cbf_require_value (cbf_handle handle, const char **value,
const char *defaultvalue );
CBFLib documentation:
DESCRIPTION
cbf_get_value sets *value to point to the ASCII value of the item at
the current column and row. cbf_require_value sets *value to point to
the ASCII value of the item at the current column and row, creating
the data item if necessary and initializing it to a copy of
defaultvalue.
If the value is not ASCII, the function returns CBF_BINARY.
The value will be valid as long as the item exists and has not been
set to a new value.
The value must not be modified by the program in any way.
ARGUMENTS
handle CBF handle. value Pointer to the destination
value pointer. defaultvalue Default value character string.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_require_value(self, defaultvalue)
def require_column_integervalue(self, columnname, defaultvalue):
r"""
Returns : Int Value
*args : String Columnvalue,Int default
C prototype: int cbf_require_column_integervalue (cbf_handle handle,
const char *columnname, int *number,
const int defaultvalue);
CBFLib documentation:
DESCRIPTION
cbf_require_column_doublevalue sets *number to the value of the ASCII
item at the current row for the column given with the name given by
*columnname, with the value interpreted as an integer number, or to
the number given by defaultvalue if the item cannot be found.
ARGUMENTS
handle CBF handle. columnname Name of the column
containing the number. number pointer to the location to
receive the integer value. defaultvalue Value to use if the
requested column and value cannot be found.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_require_column_integervalue(self, columnname, defaultvalue)
def set_pixel_size(self, element_number, axis_number, psize):
r"""
Returns :
*args : Int element_number,Int axis_number,Float pixel size
C prototype: int cbf_set_pixel_size (cbf_handle handle,
unsigned int element_number, int axis_number,
double psize);
CBFLib documentation:
DESCRIPTION
cbf_set_pixel_size and cbf_set_pixel_size_sf set the item in the
"size " column of the "array_structure_list " category at the
row which matches axis axis_number of the detector element
element_number converting the double pixel size psize from meters to
millimeters in storing it in the "size " column for the axis
axis_number of the detector element element_number. The axis_number
is numbered from 1, starting with the slowest axis.
cbf_set_pixel_size_fs sets the item in the "size " column of the
"array_structure_list " category at the row which matches axis
axis_number of the detector element element_number converting the
double pixel size psize from meters to millimeters in storing it in
the "size " column for the axis axis_number of the detector
element element_number. The axis_number is numbered from 1, starting
with the fastest axis.
If a negative axis number is given, the order of axes is reversed, so
that -1 specifies the slowest axis for cbf_get_pixel_size_fs and the
fastest axis for cbf_get_pixel_size_sf.
If the "array_structure_list " category does not already exist, it
is created.
If the appropriate row in the "array_structure_list " catgeory
does not already exist, it is created.
If the pixel size is not given explcitly in the "array_element_size
category ", the function returns CBF_NOTFOUND.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. axis_number The number of the
axis, fastest first, starting from 1.
"""
return _py2cbf.cbf_handle_struct_set_pixel_size(self, element_number, axis_number, psize)
def next_column(self):
r"""
Returns :
*args :
C prototype: int cbf_next_column (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_next_column makes the column following the current column in the
current category the current column.
If there are no more columns, the function returns CBF_NOTFOUND.
The current row is not affected.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_next_column(self)
def get_3d_image_size_sf(self, element_number):
r"""
Returns : size_t ndimslow,size_t ndimmid,size_t ndimfast
*args : Integer element_number
C prototype: int cbf_get_3d_image_size_sf (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
size_t *ndimslow, size_t *ndimmid, size_t *ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image_size, cbf_get_image_size_fs and cbf_get_image_size_sf
set *ndimslow and *ndimfast to the slow and fast dimensions of the
image array for element number element_number. If the array is
1-dimensional, *ndimslow will be set to the array size and *ndimfast
will be set to 1. If the array is 3-dimensional an error code will be
returned. cbf_get_3d_image_size, cbf_get_3d_image_size_fs and
cbf_get_3d_image_size_sf set *ndimslow, *ndimmid and *ndimfast to the
slowest, next fastest and fastest dimensions, respectively, of the 3D
image array for element number element_number. If the array is
1-dimensional, *ndimslow will be set to the array size and *ndimmid
and
"""
return _py2cbf.cbf_handle_struct_get_3d_image_size_sf(self, element_number)
def get_realarrayparameters_wdims_fs(self):
r"""
Returns : int compression,int binary_id,int elsize,int elements,char **bo,
int *bolen,int dimfast,int dimmid,int dimslow,int padding
*args :
C prototype: int cbf_get_realarrayparameters_wdims_fs (cbf_handle handle,
unsigned int *compression, int *binary_id, size_t *elsize,
size_t *elements, const char **byteorder, size_t *dimfast,
size_t *dimmid, size_t *dimslow, size_t *padding);
CBFLib documentation:
DESCRIPTION
cbf_get_integerarrayparameters sets *compression, *binary_id,
*elsize, *elsigned, *elunsigned, *elements, *minelement and
*maxelement to values read from the binary value of the item at the
current column and row. This provides all the arguments needed for a
subsequent call to cbf_set_integerarray, if a copy of the array is to
be made into another CIF or CBF. cbf_get_realarrayparameters sets
*compression, *binary_id, *elsize, *elements to values read from the
binary value of the item at the current column and row. This provides
all the arguments needed for a subsequent call to cbf_set_realarray,
if a copy of the arry is to be made into another CIF or CBF.
The variants cbf_get_integerarrayparameters_wdims,
cbf_get_integerarrayparameters_wdims_fs,
cbf_get_integerarrayparameters_wdims_sf,
cbf_get_realarrayparameters_wdims,
cbf_get_realarrayparameters_wdims_fs,
cbf_get_realarrayparameters_wdims_sf set **byteorder, *dimfast,
*dimmid, *dimslow, and *padding as well, providing the additional
parameters needed for a subsequent call to cbf_set_integerarray_wdims
or cbf_set_realarray_wdims.
The value returned in *byteorder is a pointer either to the string
"little_endian " or to the string "big_endian ". This should be
the byte order of the data, not necessarily of the host machine. No
attempt should be made to modify this string. At this time only
"little_endian " will be returned.
The values returned in *dimfast, *dimmid and *dimslow are the sizes
of the fastest changing, second fastest changing and third fastest
changing dimensions of the array, if specified, or zero, if not
specified.
The value returned in *padding is the size of the post-data padding,
if any and if specified in the data header. The value is given as a
count of octets.
If the value is not binary, the function returns CBF_ASCII.
ARGUMENTS
handle CBF handle. compression Compression method used.
elsize Size in bytes of each array element. binary_id
Pointer to the destination integer binary identifier. elsigned
Pointer to an integer. Set to 1 if the elements can be read as signed
integers. elunsigned Pointer to an integer. Set to 1 if the
elements can be read as unsigned integers. elements Pointer to
the destination number of elements. minelement Pointer to the
destination smallest element. maxelement Pointer to the
destination largest element. byteorder Pointer to the destination
byte order. dimfast Pointer to the destination fastest
dimension. dimmid Pointer to the destination second fastest
dimension. dimslow Pointer to the destination third fastest
dimension. padding Pointer to the destination padding size.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_realarrayparameters_wdims_fs(self)
def get_realarray_as_string(self):
r"""
Returns : (Binary)String
*args :
C prototype: int cbf_get_realarray (cbf_handle handle, int *binary_id,
void *array, size_t elsize, size_t elements,
size_t *elements_read);
CBFLib documentation:
DESCRIPTION
cbf_get_integerarray reads the binary value of the item at the
current column and row into an integer array. The array consists of
elements elements of elsize bytes each, starting at array. The
elements are signed if elsigned is non-0 and unsigned otherwise.
*binary_id is set to the binary section identifier and *elements_read
to the number of elements actually read. cbf_get_realarray reads the
binary value of the item at the current column and row into a real
array. The array consists of elements elements of elsize bytes each,
starting at array. *binary_id is set to the binary section identifier
and *elements_read to the number of elements actually read.
If any element in the integer binary data cant fit into the
destination element, the destination is set the nearest possible
value.
If the value is not binary, the function returns CBF_ASCII.
If the requested number of elements cant be read, the function will
read as many as it can and then return CBF_ENDOFDATA.
Currently, the destination array must consist of chars, shorts or
ints (signed or unsigned). If elsize is not equal to sizeof (char),
sizeof (short) or sizeof (int), for cbf_get_integerarray, or
sizeof(double) or sizeof(float), for cbf_get_realarray the function
returns CBF_ARGUMENT.
An additional restriction in the current version of CBFlib is that
values too large to fit in an int are not correctly decompressed. As
an example, if the machine with 32-bit ints is reading an array
containing a value outside the range 0 .. 2^^32-1 (unsigned) or
-2^^31 .. 2^^31-1 (signed), the array will not be correctly
decompressed. This restriction will be removed in a future release.
For cbf_get_realarray, only IEEE format is supported. No conversion
to other floating point formats is done at this time.
ARGUMENTS
handle CBF handle. binary_id Pointer to the
destination integer binary identifier. array Pointer to the
destination array. elsize Size in bytes of each destination
array element. elsigned Set to non-0 if the destination array
elements are signed. elements The number of elements to read.
elements_read Pointer to the destination number of elements
actually read.
RETURN VALUE
Returns an error code on failure or 0 for success. SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_realarray_as_string(self)
def get_bin_sizes(self, element_number):
r"""
Returns : Float slowbinsize,Float fastbinsize
*args : Integer element_number
C prototype: int cbf_get_bin_sizes(cbf_handle handle,
unsigned int element_number, double * slowbinsize,
double * fastbinsize);
CBFLib documentation:
DESCRIPTION
cbf_get_bin_sizes sets slowbinsize to point to the value of the
number of pixels composing one array element in the dimension that
changes at the second-fastest rate and fastbinsize to point to the
value of the number of pixels composing one array element in the
dimension that changes at the fastest rate for the dectector element
with the ordinal element_number. cbf_set_bin_sizes sets the the pixel
bin sizes in the "array_intensities " category to the values of
slowbinsize_in for the number of pixels composing one array element
in the dimension that changes at the second-fastest rate and
fastbinsize_in for the number of pixels composing one array element
in the dimension that changes at the fastest rate for the dectector
element with the ordinal element_number.
In order to allow for software binning involving fractions of pixels,
the bin sizes are doubles rather than ints.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. slowbinsize Pointer to the
returned number of pixels composing one array element in the
dimension that changes at the second-fastest rate. fastbinsize
Pointer to the returned number of pixels composing one array element
in the dimension that changes at the fastest rate. slowbinsize_in
The number of pixels composing one array element in the dimension
that changes at the second-fastest rate. fastbinsize_in The number
of pixels composing one array element in the dimension that changes
at the fastest rate.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_bin_sizes(self, element_number)
def reset_category(self):
r"""
Returns :
*args :
C prototype: int cbf_reset_category (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_reset_category deletes all columns and rows from current category.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_reset_category(self)
def count_axis_ancestors(self, axis_id):
r"""
Returns : Integer
*args : String axis_id
C prototype: int cbf_count_axis_ancestors (cbf_handle handle,
const char *axis_id, unsigned int *ancestors);
CBFLib documentation:
DESCRIPTION
cbf_count_axis_ancestors sets ancestors to the number of ancestors of
axis axis_id. cbf_get_axis_ancestor sets *ancestor to the ancestor
axis of index ancestor_index of axis axis_id, starting with axis_id
for ancestor_index 0.
cbf_get_axis_depends_on sets *depends_on to the immediate ancestor of
axis_id or to ". " if there is no such ancestor.
cbf_get_axis_equipment sets *equipment to the equipment of axis_id or
to ". " if there is no such equipment.
cbf_get_axis_equipment_component sets *equipment_component to the
equipment_component of axis_id or to ". " if there is no such
equipment_component.
cbf_get_axis_offset sets *offset1, *offset2 and *offset3 to the
components of the ofset of axis_id.
cbf_get_axis_rotation sets rotation to the rotation of axis_id or to
0 if there is no such rotation. cbf_get_axis_rotation_axis sets
*rotation_axis to the rotation_axis of axis_id or to ". " if there
is no such rotation_axis.
cbf_get_axis_setting sets *start and *increment to the corresponding
values of the axis axis_id. Any of the destination pointers may be
NULL.
cbf_get_axis_type sets axis_type to the type of axis_id.
cbf_get_axis_vector sets *vector1, *vector2 and *vector3 to the
components of the vector of axis_id.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any
value other than 0 is invalid. axis_id Axis id.
ancestor_index Integer index of the desired ancestor, starting
with 0 for the current axis_id. ancestor Pointer to
destination ancestor name pointer. depends_on Pointer to
destination depends_on name pointer. equipment Pointer to
destination equipment name pointer. equipment_component Pointer to
destination equipment_component name pointer. offset1
Pointer to destination first offset component value. offset2
Pointer to destination second offset component value. offset3
Pointer to destination third offset component value.
rotation Pointer to destination rotation value.
rotation_axis Pointer to destination rotation_axisn name
pointer. start Pointer to the destination start
value. increment Pointer to the destination increment
value. type Pointer to destination axis type of type
. vector1 Pointer to destination first vector component
value. vector2 Pointer to destination second vector
component value. vector3 Pointer to destination third
vector component value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_count_axis_ancestors(self, axis_id)
def construct_goniometer(self):
r"""
Returns : pycbf goniometer object
*args :
C prototype: int cbf_construct_goniometer (cbf_handle handle,
cbf_goniometer *goniometer);
CBFLib documentation:
DESCRIPTION
cbf_construct_goniometer constructs a goniometer object using the
description in the CBF object handle and initialises the goniometer
handle *goniometer.
ARGUMENTS
handle CBF handle. goniometer Pointer to the destination
goniometer handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_construct_goniometer(self)
def set_datablockname(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_set_datablockname (cbf_handle handle,
const char *datablockname);
CBFLib documentation:
DESCRIPTION
cbf_set_datablockname changes the name of the current data block to
datablockname. cbf_set_saveframename changes the name of the current
save frame to saveframename.
If a data block or save frame with this name already exists
(comparison is case-insensitive), the function returns CBF_IDENTICAL.
ARGUMENTS
handle CBF handle. datablockname The new data block name.
saveframename The new save frame name.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_datablockname(self, arg)
def get_element_number(self):
r"""get_element_number(cbf_handle_struct self)"""
return _py2cbf.cbf_handle_struct_get_element_number(self)
def set_crystal_id(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_set_crystal_id (cbf_handle handle,
const char *crystal_id);
CBFLib documentation:
DESCRIPTION
cbf_set_crystal_id sets the "diffrn.crystal_id " entry to the
ASCII value crystal_id.
ARGUMENTS
handle CBF handle. crystal_id ASCII value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_crystal_id(self, arg)
def get_integerarray_as_string(self):
r"""
Returns : (Binary)String
*args :
C prototype: int cbf_get_integerarray (cbf_handle handle, int *binary_id,
void *array, size_t elsize, int elsigned, size_t elements,
size_t *elements_read);
CBFLib documentation:
DESCRIPTION
cbf_get_integerarray reads the binary value of the item at the
current column and row into an integer array. The array consists of
elements elements of elsize bytes each, starting at array. The
elements are signed if elsigned is non-0 and unsigned otherwise.
*binary_id is set to the binary section identifier and *elements_read
to the number of elements actually read. cbf_get_realarray reads the
binary value of the item at the current column and row into a real
array. The array consists of elements elements of elsize bytes each,
starting at array. *binary_id is set to the binary section identifier
and *elements_read to the number of elements actually read.
If any element in the integer binary data cant fit into the
destination element, the destination is set the nearest possible
value.
If the value is not binary, the function returns CBF_ASCII.
If the requested number of elements cant be read, the function will
read as many as it can and then return CBF_ENDOFDATA.
Currently, the destination array must consist of chars, shorts or
ints (signed or unsigned). If elsize is not equal to sizeof (char),
sizeof (short) or sizeof (int), for cbf_get_integerarray, or
sizeof(double) or sizeof(float), for cbf_get_realarray the function
returns CBF_ARGUMENT.
An additional restriction in the current version of CBFlib is that
values too large to fit in an int are not correctly decompressed. As
an example, if the machine with 32-bit ints is reading an array
containing a value outside the range 0 .. 2^^32-1 (unsigned) or
-2^^31 .. 2^^31-1 (signed), the array will not be correctly
decompressed. This restriction will be removed in a future release.
For cbf_get_realarray, only IEEE format is supported. No conversion
to other floating point formats is done at this time.
ARGUMENTS
handle CBF handle. binary_id Pointer to the
destination integer binary identifier. array Pointer to the
destination array. elsize Size in bytes of each destination
array element. elsigned Set to non-0 if the destination array
elements are signed. elements The number of elements to read.
elements_read Pointer to the destination number of elements
actually read.
RETURN VALUE
Returns an error code on failure or 0 for success. SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_integerarray_as_string(self)
def set_3d_image(self, element_number, compression, data, elsize, elsign, ndimslow, ndimmid, ndimfast):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int elsign,int dimslow,int dimmid,int dimfast
C prototype: int cbf_set_3d_image (cbf_handle handle, unsigned int reserved,
unsigned int element_number, unsigned int compression,
void *array, size_t elsize, int elsign, size_t ndimslow,
size_t ndimmid, size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_3d_image(self, element_number, compression, data, elsize, elsign, ndimslow, ndimmid, ndimfast)
def set_dictionary(self, other):
r"""
Returns :
*args : CBFHandle dictionary
C prototype: int cbf_set_dictionary (cbf_handle handle,
cbf_handle dictionary_in);
CBFLib documentation:
DESCRIPTION
cbf_get_dictionary sets *dictionary to the handle of a CBF which has
been associated with the CBF handle by cbf_set_dictionary.
cbf_set_dictionary associates the CBF handle dictionary_in with
handle as its dictionary. cbf_require_dictionary sets *dictionary to
the handle of a CBF which has been associated with the CBF handle by
cbf_set_dictionary or creates a new empty CBF and associates it with
handle, returning the new handle in *dictionary.
ARGUMENTS
handle CBF handle. dictionary Pointer to CBF handle of
dictionary. dictionary_in CBF handle of dcitionary.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_dictionary(self, other)
def find_tag_category(self, tagname):
r"""
Returns : String categoryname
*args : String tagname
C prototype: int cbf_find_tag_category (cbf_handle handle,
const char* tagname, const char** categoryname);
CBFLib documentation:
DESCRIPTION
cbf_find_tag_category sets categoryname to the category associated
with tagname in the dictionary associated with handle.
cbf_set_tag_category upddates the dictionary associated with handle
to indicated that tagname is in category categoryname_in.
ARGUMENTS
handle CBF handle. tagname tag name.
categoryname pointer to a returned category name.
categoryname_in input category name.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_find_tag_category(self, tagname)
def get_real_3d_image_sf_as_string(self, element_number, elsize, ndimslow, ndimmid, ndimfast):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int ndimslow,int ndimmid,int ndimfast
C prototype: int cbf_get_real_3d_image_sf (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
void *array, size_t elsize, size_t ndimslow,
size_t ndimmid, size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_real_3d_image_sf_as_string(self, element_number, elsize, ndimslow, ndimmid, ndimfast)
def set_typeofvalue(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_set_typeofvalue (cbf_handle handle,
const char *typeofvalue);
CBFLib documentation:
DESCRIPTION
cbf_set_typeofvalue sets the type of the item at the current column
and row to the type specified by the ASCII character string given by
typeofvalue. The strings that may be used are:
"null " for a null value indicated by a ". " or a "? "
"bnry " for a binary value "word " for an unquoted string
"dblq " for a double-quoted string "sglq " for a single-quoted
string "text " for a semicolon-quoted string (multiline text
field) "prns " for a parenthesis-bracketed string (multiline text
field) "brcs " for a brace-bracketed string (multiline text field)
"bkts " for a square-bracket-bracketed string (multiline text
field) "tsqs " for a treble-single-quote quoted string (multiline
text field) "tdqs " for a treble-double-quote quoted string
(multiline text field)
Not all types may be used for all values. Not all types are valid for
all type of CIF files. In partcular the types "prns ", "brcs ",
"bkts " were introduced with DDLm and are not valid in DDL1 or
DDL2 CIFS. The types "tsqs " and "tdqs " are not formally part
of the CIF syntax. No changes may be made to the type of binary
values. You may not set the type of a string that contains a single
quote followed by a blank or a tab or which contains multiple lines
to "sglq ". You may not set the type of a string that contains a
double quote followed by a blank or a tab or which contains multiple
lines to "dblq ".
ARGUMENTS
handle CBF handle. typeofvalue ASCII string for desired type
of value.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_typeofvalue(self, arg)
def get_axis_rotation_axis(self, axis_id):
r"""
Returns : String
*args : String axis_id
C prototype: int cbf_get_axis_rotation_axis (cbf_handle handle,
const char *axis_id, const char * *rotation_axis);
CBFLib documentation:
DESCRIPTION
cbf_count_axis_ancestors sets ancestors to the number of ancestors of
axis axis_id. cbf_get_axis_ancestor sets *ancestor to the ancestor
axis of index ancestor_index of axis axis_id, starting with axis_id
for ancestor_index 0.
cbf_get_axis_depends_on sets *depends_on to the immediate ancestor of
axis_id or to ". " if there is no such ancestor.
cbf_get_axis_equipment sets *equipment to the equipment of axis_id or
to ". " if there is no such equipment.
cbf_get_axis_equipment_component sets *equipment_component to the
equipment_component of axis_id or to ". " if there is no such
equipment_component.
cbf_get_axis_offset sets *offset1, *offset2 and *offset3 to the
components of the ofset of axis_id.
cbf_get_axis_rotation sets rotation to the rotation of axis_id or to
0 if there is no such rotation. cbf_get_axis_rotation_axis sets
*rotation_axis to the rotation_axis of axis_id or to ". " if there
is no such rotation_axis.
cbf_get_axis_setting sets *start and *increment to the corresponding
values of the axis axis_id. Any of the destination pointers may be
NULL.
cbf_get_axis_type sets axis_type to the type of axis_id.
cbf_get_axis_vector sets *vector1, *vector2 and *vector3 to the
components of the vector of axis_id.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any
value other than 0 is invalid. axis_id Axis id.
ancestor_index Integer index of the desired ancestor, starting
with 0 for the current axis_id. ancestor Pointer to
destination ancestor name pointer. depends_on Pointer to
destination depends_on name pointer. equipment Pointer to
destination equipment name pointer. equipment_component Pointer to
destination equipment_component name pointer. offset1
Pointer to destination first offset component value. offset2
Pointer to destination second offset component value. offset3
Pointer to destination third offset component value.
rotation Pointer to destination rotation value.
rotation_axis Pointer to destination rotation_axisn name
pointer. start Pointer to the destination start
value. increment Pointer to the destination increment
value. type Pointer to destination axis type of type
. vector1 Pointer to destination first vector component
value. vector2 Pointer to destination second vector
component value. vector3 Pointer to destination third
vector component value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_rotation_axis(self, axis_id)
def set_integerarray_wdims(self, compression, binary_id, data, elsize, elsigned, elements, bo, dimfast, dimmid, dimslow, padding):
r"""
Returns :
*args : int compression,int binary_id,(binary) String data,int elsize,
int elsigned,int elements,String byteorder,int dimfast,int dimmid,
int dimslow,int padding
C prototype: int cbf_set_integerarray_wdims (cbf_handle handle,
unsigned int compression, int binary_id, void *array,
size_t elsize, int elsigned, size_t elements,
const char *byteorder, size_t dimfast, size_t dimmid,
size_t dimslow, size_t padding);
CBFLib documentation:
DESCRIPTION
cbf_set_integerarray sets the binary value of the item at the current
column and row to an integer array. The array consists of elements
elements of elsize bytes each, starting at array. The elements are
signed if elsigned is non-0 and unsigned otherwise. binary_id is the
binary section identifier. cbf_set_realarray sets the binary value of
the item at the current column and row to an integer array. The array
consists of elements elements of elsize bytes each, starting at
array. binary_id is the binary section identifier.
The cbf_set_integerarray_wdims, cbf_set_integerarray_wdims_fs,
cbf_set_integerarray_wdims_sf, cbf_set_realarray_wdims,
cbf_set_realarray_wdims_fs and cbf_set_realarray_wdims_sf variants
allow the data header values of byteorder, dimfast, dimmid, dimslow
and padding to be set to the data byte order, the fastest, second
fastest and third fastest array dimensions and the size in byte of
the post data padding to be used.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
NOTE: This scheme is by far the slowest of the four and uses much
more disk space. It is intended for routine use with small arrays
only. With large arrays (like images) it should be used only for
debugging.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned), for cbf_set_integerarray, or IEEE doubles or
floats for cbf_set_realarray. If elsize is not equal to sizeof
(char), sizeof (short) or sizeof (int), the function returns
CBF_ARGUMENT.
ARGUMENTS
handle CBF handle. compression Compression method to use.
binary_id Integer binary identifier. array Pointer to the
source array. elsize Size in bytes of each source array
element. elsigned Set to non-0 if the source array elements are
signed. elements The number of elements in the array
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_integerarray_wdims(self, compression, binary_id, data, elsize, elsigned, elements, bo, dimfast, dimmid, dimslow, padding)
def set_integration_time(self, time):
r"""
Returns :
*args : Float time
C prototype: int cbf_set_integration_time (cbf_handle handle,
unsigned int reserved, double time);
CBFLib documentation:
DESCRIPTION
cbf_set_integration_time sets the integration time in seconds to the
value specified by time. The parameter reserved is presently unused
and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other than 0 is
invalid. time Integration time in seconds.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_integration_time(self, time)
def set_axis_setting(self, axis_id, start, increment):
r"""
Returns :
*args : String axis_id,Float start,Float increment
C prototype: int cbf_set_axis_setting (cbf_handle handle,
unsigned int reserved, const char *axis_id, double start,
double increment);
CBFLib documentation:
DESCRIPTION
cbf_set_axis_setting sets the starting and increment values of the
axis axis_id to start and increment.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other than 0 is
invalid. axis_id Axis id. start Start value. increment
Increment value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_axis_setting(self, axis_id, start, increment)
def get_real_image_as_string(self, element_number, elsize, ndimslow, ndimfast):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int ndimslow,int ndimfast
C prototype: int cbf_get_real_image (cbf_handle handle, unsigned int reserved,
unsigned int element_number, void *array, size_t elsize,
size_t ndimslow, size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_real_image_as_string(self, element_number, elsize, ndimslow, ndimfast)
def get_axis_ancestor(self, axis_id, ancestor_index):
r"""
Returns : String
*args : String axis_id,Integer ancestor_index
C prototype: int cbf_get_axis_ancestor (cbf_handle handle,
const char *axis_id, const unsigned int ancestor_index,
const char * *ancestor);
CBFLib documentation:
DESCRIPTION
cbf_count_axis_ancestors sets ancestors to the number of ancestors of
axis axis_id. cbf_get_axis_ancestor sets *ancestor to the ancestor
axis of index ancestor_index of axis axis_id, starting with axis_id
for ancestor_index 0.
cbf_get_axis_depends_on sets *depends_on to the immediate ancestor of
axis_id or to ". " if there is no such ancestor.
cbf_get_axis_equipment sets *equipment to the equipment of axis_id or
to ". " if there is no such equipment.
cbf_get_axis_equipment_component sets *equipment_component to the
equipment_component of axis_id or to ". " if there is no such
equipment_component.
cbf_get_axis_offset sets *offset1, *offset2 and *offset3 to the
components of the ofset of axis_id.
cbf_get_axis_rotation sets rotation to the rotation of axis_id or to
0 if there is no such rotation. cbf_get_axis_rotation_axis sets
*rotation_axis to the rotation_axis of axis_id or to ". " if there
is no such rotation_axis.
cbf_get_axis_setting sets *start and *increment to the corresponding
values of the axis axis_id. Any of the destination pointers may be
NULL.
cbf_get_axis_type sets axis_type to the type of axis_id.
cbf_get_axis_vector sets *vector1, *vector2 and *vector3 to the
components of the vector of axis_id.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any
value other than 0 is invalid. axis_id Axis id.
ancestor_index Integer index of the desired ancestor, starting
with 0 for the current axis_id. ancestor Pointer to
destination ancestor name pointer. depends_on Pointer to
destination depends_on name pointer. equipment Pointer to
destination equipment name pointer. equipment_component Pointer to
destination equipment_component name pointer. offset1
Pointer to destination first offset component value. offset2
Pointer to destination second offset component value. offset3
Pointer to destination third offset component value.
rotation Pointer to destination rotation value.
rotation_axis Pointer to destination rotation_axisn name
pointer. start Pointer to the destination start
value. increment Pointer to the destination increment
value. type Pointer to destination axis type of type
. vector1 Pointer to destination first vector component
value. vector2 Pointer to destination second vector
component value. vector3 Pointer to destination third
vector component value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_ancestor(self, axis_id, ancestor_index)
def get_3d_image_sf_as_string(self, element_number, elsize, elsign, ndimfast, ndimmid, ndimslow):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int elsign,int ndimslow,int ndimmid,
int ndimfast
C prototype: int cbf_get_3d_image_sf (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
void *array, size_t elsize, int elsign, size_t ndimslow,
size_t ndimmid, size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_3d_image_sf_as_string(self, element_number, elsize, elsign, ndimfast, ndimmid, ndimslow)
def set_real_image_fs(self, element_number, compression, data, elsize, ndimfast, ndimslow):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int dimfast,int dimslow
C prototype: int cbf_set_real_image_fs(cbf_handle handle,
unsigned int reserved, unsigned int element_number,
unsigned int compression, void *array,size_t elsize,
size_t ndimfast, size_t ndimslow);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_real_image_fs(self, element_number, compression, data, elsize, ndimfast, ndimslow)
def get_overload(self, element_number):
r"""
Returns : Float overload
*args : Integer element_number
C prototype: int cbf_get_overload (cbf_handle handle,
unsigned int element_number, double *overload);
CBFLib documentation:
DESCRIPTION
cbf_get_overload sets *overload to the overload value for element
number element_number.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. overload Pointer to the
destination overload.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_overload(self, element_number)
def get_wavelength(self):
r"""
Returns : double
*args :
C prototype: int cbf_get_wavelength (cbf_handle handle, double *wavelength);
CBFLib documentation:
DESCRIPTION
cbf_get_wavelength sets *wavelength to the current wavelength in Å.
ARGUMENTS
handle CBF handle. wavelength Pointer to the destination.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_wavelength(self)
def next_datablock(self):
r"""
Returns :
*args :
C prototype: int cbf_next_datablock (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_next_datablock makes the data block following the current data
block the current data block.
If there are no more data blocks, the function returns CBF_NOTFOUND.
The current category becomes undefined.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_next_datablock(self)
def get_realarrayparameters_wdims(self):
r"""
Returns : int compression,int binary_id,int elsize,int elements,char **bo,
int *bolen,int dimfast,int dimmid,int dimslow,int padding
*args :
C prototype: int cbf_get_realarrayparameters_wdims (cbf_handle handle,
unsigned int *compression, int *binary_id, size_t *elsize,
size_t *elements, const char **byteorder, size_t *dimfast,
size_t *dimmid, size_t *dimslow, size_t *padding);
CBFLib documentation:
DESCRIPTION
cbf_get_integerarrayparameters sets *compression, *binary_id,
*elsize, *elsigned, *elunsigned, *elements, *minelement and
*maxelement to values read from the binary value of the item at the
current column and row. This provides all the arguments needed for a
subsequent call to cbf_set_integerarray, if a copy of the array is to
be made into another CIF or CBF. cbf_get_realarrayparameters sets
*compression, *binary_id, *elsize, *elements to values read from the
binary value of the item at the current column and row. This provides
all the arguments needed for a subsequent call to cbf_set_realarray,
if a copy of the arry is to be made into another CIF or CBF.
The variants cbf_get_integerarrayparameters_wdims,
cbf_get_integerarrayparameters_wdims_fs,
cbf_get_integerarrayparameters_wdims_sf,
cbf_get_realarrayparameters_wdims,
cbf_get_realarrayparameters_wdims_fs,
cbf_get_realarrayparameters_wdims_sf set **byteorder, *dimfast,
*dimmid, *dimslow, and *padding as well, providing the additional
parameters needed for a subsequent call to cbf_set_integerarray_wdims
or cbf_set_realarray_wdims.
The value returned in *byteorder is a pointer either to the string
"little_endian " or to the string "big_endian ". This should be
the byte order of the data, not necessarily of the host machine. No
attempt should be made to modify this string. At this time only
"little_endian " will be returned.
The values returned in *dimfast, *dimmid and *dimslow are the sizes
of the fastest changing, second fastest changing and third fastest
changing dimensions of the array, if specified, or zero, if not
specified.
The value returned in *padding is the size of the post-data padding,
if any and if specified in the data header. The value is given as a
count of octets.
If the value is not binary, the function returns CBF_ASCII.
ARGUMENTS
handle CBF handle. compression Compression method used.
elsize Size in bytes of each array element. binary_id
Pointer to the destination integer binary identifier. elsigned
Pointer to an integer. Set to 1 if the elements can be read as signed
integers. elunsigned Pointer to an integer. Set to 1 if the
elements can be read as unsigned integers. elements Pointer to
the destination number of elements. minelement Pointer to the
destination smallest element. maxelement Pointer to the
destination largest element. byteorder Pointer to the destination
byte order. dimfast Pointer to the destination fastest
dimension. dimmid Pointer to the destination second fastest
dimension. dimslow Pointer to the destination third fastest
dimension. padding Pointer to the destination padding size.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_realarrayparameters_wdims(self)
def set_orientation_matrix(self, m0, m1, m2, m3, m4, m5, m6, m7, m8):
r"""
Returns :
*args : Float matrix_0,Float matrix_1,Float matrix_2,Float matrix_3,
Float matrix_4,Float matrix_5,Float matrix_6,Float matrix_7,
Float matrix_8
C prototype: int cbf_set_orientation_matrix (cbf_handle handle,
double ub_matrix[9]);
CBFLib documentation:
DESCRIPTION
cbf_get_orientation_matrix sets ub_matrix to point to the array of
orientation matrix entries in the "diffrn " category in the order
of columns:
"UB[1][1] " "UB[1][2] " "UB[1][3] " "UB[2][1] "
"UB[2][2] " "UB[2][3] " "UB[3][1] " "UB[3][2] "
"UB[3][3] "
cbf_set_orientation_matrix sets the values in the "diffrn "
category to the values pointed to by ub_matrix.
ARGUMENTS
handle CBF handle. ub_matrix Source or destination array of 9
doubles giving the orientation matrix parameters.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_orientation_matrix(self, m0, m1, m2, m3, m4, m5, m6, m7, m8)
def new_category(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_new_category (cbf_handle handle,
const char *categoryname);
CBFLib documentation:
DESCRIPTION
cbf_new_category creates a new category in the current data block
with name categoryname and makes it the current category.
If a category with this name already exists, the existing category
becomes the current category.
ARGUMENTS
handle CBF handle. categoryname The name of the new
category.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_new_category(self, arg)
def set_gain(self, element_number, gain, gain_esd):
r"""
Returns :
*args : Float gain,Float gain_esd
C prototype: int cbf_set_gain (cbf_handle handle, unsigned int element_number,
double gain, double gain_esd);
CBFLib documentation:
DESCRIPTION
cbf_set_gain sets the gain of element number element_number to the
values specified by gain and gain_esd.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. gain New gain value.
gain_esd New gain_esd value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_gain(self, element_number, gain, gain_esd)
def find_column(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_find_column (cbf_handle handle, const char *columnname);
CBFLib documentation:
DESCRIPTION
cbf_find_column makes the columns in the current category with name
columnname the current column.
The comparison is case-insensitive.
If the column does not exist, the function returns CBF_NOTFOUND.
The current row is not affected.
ARGUMENTS
handle CBF handle. columnname The name of column to find.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_find_column(self, arg)
def remove_category(self):
r"""
Returns :
*args :
C prototype: int cbf_remove_category (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_remove_category deletes the current category.
The current category becomes undefined.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_remove_category(self)
def get_integerarrayparameters_wdims_sf(self):
r"""
Returns : int compression,int binary_id,int elsize,int elsigned,int elunsigned,
int elements,int minelement,int maxelement,char **bo,int *bolen,
int dimslow,int dimmid,int dimfast,int padding
*args :
C prototype: int cbf_get_integerarrayparameters_wdims_sf (cbf_handle handle,
unsigned int *compression, int *binary_id, size_t *elsize,
int *elsigned, int *elunsigned, size_t *elements,
int *minelement, int *maxelement, const char **byteorder,
size_t *dimslow, size_t *dimmid, size_t *dimfast,
size_t *padding);
CBFLib documentation:
DESCRIPTION
cbf_get_integerarrayparameters sets *compression, *binary_id,
*elsize, *elsigned, *elunsigned, *elements, *minelement and
*maxelement to values read from the binary value of the item at the
current column and row. This provides all the arguments needed for a
subsequent call to cbf_set_integerarray, if a copy of the array is to
be made into another CIF or CBF. cbf_get_realarrayparameters sets
*compression, *binary_id, *elsize, *elements to values read from the
binary value of the item at the current column and row. This provides
all the arguments needed for a subsequent call to cbf_set_realarray,
if a copy of the arry is to be made into another CIF or CBF.
The variants cbf_get_integerarrayparameters_wdims,
cbf_get_integerarrayparameters_wdims_fs,
cbf_get_integerarrayparameters_wdims_sf,
cbf_get_realarrayparameters_wdims,
cbf_get_realarrayparameters_wdims_fs,
cbf_get_realarrayparameters_wdims_sf set **byteorder, *dimfast,
*dimmid, *dimslow, and *padding as well, providing the additional
parameters needed for a subsequent call to cbf_set_integerarray_wdims
or cbf_set_realarray_wdims.
The value returned in *byteorder is a pointer either to the string
"little_endian " or to the string "big_endian ". This should be
the byte order of the data, not necessarily of the host machine. No
attempt should be made to modify this string. At this time only
"little_endian " will be returned.
The values returned in *dimfast, *dimmid and *dimslow are the sizes
of the fastest changing, second fastest changing and third fastest
changing dimensions of the array, if specified, or zero, if not
specified.
The value returned in *padding is the size of the post-data padding,
if any and if specified in the data header. The value is given as a
count of octets.
If the value is not binary, the function returns CBF_ASCII.
ARGUMENTS
handle CBF handle. compression Compression method used.
elsize Size in bytes of each array element. binary_id
Pointer to the destination integer binary identifier. elsigned
Pointer to an integer. Set to 1 if the elements can be read as signed
integers. elunsigned Pointer to an integer. Set to 1 if the
elements can be read as unsigned integers. elements Pointer to
the destination number of elements. minelement Pointer to the
destination smallest element. maxelement Pointer to the
destination largest element. byteorder Pointer to the destination
byte order. dimfast Pointer to the destination fastest
dimension. dimmid Pointer to the destination second fastest
dimension. dimslow Pointer to the destination third fastest
dimension. padding Pointer to the destination padding size.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_integerarrayparameters_wdims_sf(self)
def get_pixel_size(self, element_number, axis_number):
r"""
Returns : Float pixel_size
*args : Int element_number,Int axis_number
C prototype: int cbf_get_pixel_size (cbf_handle handle,
unsigned int element_number, int axis_number,
double *psize);
CBFLib documentation:
DESCRIPTION
cbf_get_pixel_size and cbf_get_pixel_size_sf set *psize to point to
the double value in millimeters of the axis axis_number of the
detector element element_number. The axis_number is numbered from 1,
starting with the slowest axis. cbf_get_pixel_size_fs sets *psize to
point to the double value in millimeters of the axis axis_number of
the detector element element_number. The axis_number is numbered from
1, starting with the fastest axis.
If a negative axis number is given, the order of axes is reversed, so
that -1 specifies the slowest axis for cbf_get_pixel_size_fs and the
fastest axis for cbf_get_pixel_size_sf.
If the pixel size is not given explcitly in the "array_element_size
" category, the function returns CBF_NOTFOUND.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. axis_number The number of the
axis, starting from 1 for the fastest for cbf_get_pixel_size and
cbf_get_pixel_size_fs and the slowest for cbf_get_pixel_size_sf.
psize Pointer to the destination pixel size.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_pixel_size(self, element_number, axis_number)
def set_real_image_sf(self, element_number, compression, data, elsize, ndimslow, ndimfast):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int dimslow,int dimfast
C prototype: int cbf_set_real_image_sf(cbf_handle handle,
unsigned int reserved, unsigned int element_number,
unsigned int compression, void *array,size_t elsize,
size_t ndimslow, size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_real_image_sf(self, element_number, compression, data, elsize, ndimslow, ndimfast)
def require_category(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_require_category (cbf_handle handle,
const char *categoryname);
CBFLib documentation:
DESCRIPTION
cbf_rewuire_category makes the category in the current data block
with name categoryname the current category, if it exists, or creates
the catagory if it does not exist.
The comparison is case-insensitive.
The current column and row become undefined.
ARGUMENTS
handle CBF handle. categoryname The name of the category to
find.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_require_category(self, arg)
def get_reciprocal_cell(self):
r"""
Returns : Float astar,Float bstar,Float cstar,Float alphastar,Float betastar,
Float gammastar
*args :
C prototype: int cbf_get_reciprocal_cell (cbf_handle handle, double cell[6],
double cell_esd[6] );
CBFLib documentation:
DESCRIPTION
cbf_get_reciprocal_cell sets cell[0:2] to the double values of the
reciprocal cell edge lengths a^*, b^* and c^* in Ångstroms^-1,
cell[3:5] to the double values of the reciprocal cell angles α^*,
β^* and γ^* in degrees, cell_esd[0:2] to the double values of the
estimated strandard deviations of the reciprocal cell edge lengths
a^*, b^* and c^* in Ångstroms^-1, cell_esd[3:5] to the double values
of the estimated standard deviations of the the reciprocal cell
angles α^*, β^* and γ^* in degrees.
The values returned are retrieved from the first row of the "cell
" category. The value of "_cell.entry_id " is ignored.
cell or cell_esd may be NULL.
If cell is NULL, the reciprocal cell parameters are not retrieved.
If cell_esd is NULL, the reciprocal cell parameter esds are not
retrieved.
If the "cell " category is present, but some of the values are
missing, zeros are returned for the missing values.
ARGUMENTS
handle CBF handle. cell Pointer to the destination array of
6 doubles for the reciprocal cell parameters. cell_esd Pointer to
the destination array of 6 doubles for the reciprocal cell parameter
esds.
RETURN VALUE
Returns an error code on failure or 0 for success. No errors is
returned for missing values if the "cell " category exists.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_reciprocal_cell(self)
def get_reciprocal_cell_esd(self):
r"""get_reciprocal_cell_esd(cbf_handle_struct self)"""
return _py2cbf.cbf_handle_struct_get_reciprocal_cell_esd(self)
def get_3d_image_size(self, element_number):
r"""
Returns : size_t ndimslow,size_t ndimmid,size_t ndimfast
*args : Integer element_number
C prototype: int cbf_get_3d_image_size (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
size_t *ndimslow, size_t *ndimmid, size_t *ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image_size, cbf_get_image_size_fs and cbf_get_image_size_sf
set *ndimslow and *ndimfast to the slow and fast dimensions of the
image array for element number element_number. If the array is
1-dimensional, *ndimslow will be set to the array size and *ndimfast
will be set to 1. If the array is 3-dimensional an error code will be
returned. cbf_get_3d_image_size, cbf_get_3d_image_size_fs and
cbf_get_3d_image_size_sf set *ndimslow, *ndimmid and *ndimfast to the
slowest, next fastest and fastest dimensions, respectively, of the 3D
image array for element number element_number. If the array is
1-dimensional, *ndimslow will be set to the array size and *ndimmid
and
"""
return _py2cbf.cbf_handle_struct_get_3d_image_size(self, element_number)
def find_tag_root(self, tagname):
r"""
Returns : String tagroot
*args : String tagname
C prototype: int cbf_find_tag_root (cbf_handle handle, const char* tagname,
const char** tagroot);
CBFLib documentation:
DESCRIPTION
cbf_find_tag_root sets *tagroot to the root tag of which tagname is
an alias. cbf_set_tag_root sets tagname as an alias of tagroot_in in
the dictionary associated with handle, creating the dictionary if
necessary. cbf_require_tag_root sets *tagroot to the root tag of
which tagname is an alias, if there is one, or to the value of
tagname, if tagname is not an alias.
A returned tagroot string must not be modified in any way.
ARGUMENTS
handle CBF handle. tagname tag name which may be an alias.
tagroot pointer to a returned tag root name. tagroot_in input
tag root name.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_find_tag_root(self, tagname)
def require_category_root(self, categoryname):
r"""require_category_root(cbf_handle_struct self, char const * categoryname) -> char const *"""
return _py2cbf.cbf_handle_struct_require_category_root(self, categoryname)
def set_realarray_wdims_sf(self, compression, binary_id, data, elsize, elements, bo, dimslow, dimmid, dimfast, padding):
r"""
Returns :
*args : int compression,int binary_id,(binary) String data,int elsize,
int elements,String byteorder,int dimslow,int dimmid,int dimfast,
int padding
C prototype: int cbf_set_realarray_wdims_sf (cbf_handle handle,
unsigned int compression, int binary_id, void *array,
size_t elsize, size_t elements, const char *byteorder,
size_t dimslow, size_t dimmid, size_t dimfast,
size_t padding);
CBFLib documentation:
DESCRIPTION
cbf_set_integerarray sets the binary value of the item at the current
column and row to an integer array. The array consists of elements
elements of elsize bytes each, starting at array. The elements are
signed if elsigned is non-0 and unsigned otherwise. binary_id is the
binary section identifier. cbf_set_realarray sets the binary value of
the item at the current column and row to an integer array. The array
consists of elements elements of elsize bytes each, starting at
array. binary_id is the binary section identifier.
The cbf_set_integerarray_wdims, cbf_set_integerarray_wdims_fs,
cbf_set_integerarray_wdims_sf, cbf_set_realarray_wdims,
cbf_set_realarray_wdims_fs and cbf_set_realarray_wdims_sf variants
allow the data header values of byteorder, dimfast, dimmid, dimslow
and padding to be set to the data byte order, the fastest, second
fastest and third fastest array dimensions and the size in byte of
the post data padding to be used.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
NOTE: This scheme is by far the slowest of the four and uses much
more disk space. It is intended for routine use with small arrays
only. With large arrays (like images) it should be used only for
debugging.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned), for cbf_set_integerarray, or IEEE doubles or
floats for cbf_set_realarray. If elsize is not equal to sizeof
(char), sizeof (short) or sizeof (int), the function returns
CBF_ARGUMENT.
ARGUMENTS
handle CBF handle. compression Compression method to use.
binary_id Integer binary identifier. array Pointer to the
source array. elsize Size in bytes of each source array
element. elsigned Set to non-0 if the source array elements are
signed. elements The number of elements in the array
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_realarray_wdims_sf(self, compression, binary_id, data, elsize, elements, bo, dimslow, dimmid, dimfast, padding)
def set_integervalue(self, number):
r"""
Returns : int number
*args :
C prototype: int cbf_set_integervalue (cbf_handle handle, int number);
CBFLib documentation:
DESCRIPTION
cbf_set_integervalue sets the item at the current column and row to
the integer value number written as a decimal ASCII string.
ARGUMENTS
handle CBF handle. number Integer value.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_integervalue(self, number)
def category_name(self):
r"""
Returns :
*args : string
C prototype: int cbf_category_name (cbf_handle handle,
const char **categoryname);
CBFLib documentation:
DESCRIPTION
cbf_category_name sets *categoryname to point to the name of the
current category of the current data block.
The category name will be valid as long as the category exists.
The name must not be modified by the program in any way.
ARGUMENTS
handle CBF handle. categoryname Pointer to the destination
category name pointer.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_category_name(self)
def get_typeofvalue(self):
r"""
Returns :
*args : string
C prototype: int cbf_get_typeofvalue (cbf_handle handle,
const char **typeofvalue);
CBFLib documentation:
DESCRIPTION
cbf_get_value sets *typeofvalue to point an ASCII descriptor of the
value of the item at the current column and row. The strings that may
be returned are:
"null " for a null value indicated by a ". " or a "? "
"bnry " for a binary value "word " for an unquoted string
"dblq " for a double-quoted string "sglq " for a single-quoted
string "text " for a semicolon-quoted string (multiline text
field) "prns " for a parenthesis-bracketed string (multiline text
field) "brcs " for a brace-bracketed string (multiline text field)
"bkts " for a square-bracket-bracketed string (multiline text
field) "tsqs " for a treble-single-quote quoted string (multiline
text field) "tdqs " for a treble-double-quote quoted string
(multiline text field)
Not all types are valid for all type of CIF files. In partcular the
types "prns ", "brcs ", "bkts " were introduced with DDLm
and are not valid in DDL1 or DDL2 CIFS. The types "tsqs " and
"tdqs " are not formally part of the CIF syntax. A field for which
no value has been set sets *typeofvalue to NULL rather than to the
string "null ".
The typeofvalue must not be modified by the program in any way.
ARGUMENTS
handle CBF handle. typeofvalue Pointer to the destination
type-of-value string pointer.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_typeofvalue(self)
def set_real_image(self, element_number, compression, data, elsize, ndimslow, ndimfast):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int dimslow,int dimfast
C prototype: int cbf_set_real_image (cbf_handle handle, unsigned int reserved,
unsigned int element_number, unsigned int compression,
void *array,size_t elsize, size_t ndimslow,
size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_real_image(self, element_number, compression, data, elsize, ndimslow, ndimfast)
def get_3d_image_as_string(self, element_number, elsize, elsign, ndimfast, ndimmid, ndimslow):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int elsign,int ndimslow,int ndimmid,
int ndimfast
C prototype: int cbf_get_3d_image (cbf_handle handle, unsigned int reserved,
unsigned int element_number, void *array, size_t elsize,
int elsign, size_t ndimslow, size_t ndimmid,
size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_3d_image_as_string(self, element_number, elsize, elsign, ndimfast, ndimmid, ndimslow)
def get_axis_reference_poise(self, axis_id):
r"""
Returns : Float vector1,Float vector2,Float vector3,Float offset1,Float offset2,
Float offset3
*args : String axis_id
C prototype: int cbf_get_axis_reference_poise(cbf_handle handle,
double * vector1, double * vector2, double * vector3,
double * offset1, double * offset2, double * offset3,
const char * axis_id);
CBFLib documentation:
DESCRIPTION
cbf_get_axis_poise sets vector1, vector2, vector3 to point to the
components of the axis vector for axis axis_id, offset1, offset2,
offset3 to point to the components of the axis base offset vector for
axis axis_id, and angle to point to the angle of rotation of axis
axis_id after application of the axis settings for frame frame_id,
using ratio, a value between 0 and 1, indicating how far into the
internal motion in the frame to go. If frame_id is the string ".
", the first frame found is used. If there is more than one frame,
which frame will be found is indeterminate. If frame_id is NULL, the
overall setting for the scan are used, rather than those for any
particular frame. The vector and offset reported are the reference
vector and offset of the axis axis_id transformed by application of
all motions of the axes on which axis_id depends.
cbf_get_goniometer_poise vector1, vector2, vector3 to point to the
components of the axis vector for the goniometer axis, offset1,
offset2, offset3 to point to the components of the axis base offset
vector for the goniometer axis, and angle to point to the angle of
rotation of the goniometer axis after application of all axis
settings in the goniometer deriving the vector, offset and angle from
the resulting matrix. Calculation of the vector is indeterminate if
the angle is zero.
cbf_get_axis_reference_poise sets vector1, vector2, vector3 to point
to the components of the axis vector for axis axis_id, offset1,
offset2, offset3 to point to the components of the axis base offset
vector for axis axis_id unmodified by axis rotations. Any of the
pointers may be specified as NULL.
ARGUMENTS
handle CBF handle. ratio A number between 0 and 1
indication how far into the frame to go vector1 Pointer to the
first component of the axis vector vector2 Pointer to the second
component of the axis vector vector3 Pointer to the third
component of the axis vector offset1 Pointer to the first
component of the axis offset offset2 Pointer to the second
component of the axis offset offset3 Pointer to the third
component of the axis offset angle Pointer to the rotation
angle axis_id The specified axis frame_id The specified
frame positioner CBF goniometer
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_reference_poise(self, axis_id)
def remove_row(self):
r"""
Returns :
*args :
C prototype: int cbf_remove_row (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_remove_row deletes the current row in the current category.
If the current row was the last row, it will move down by 1,
otherwise, it will remain the same.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_remove_row(self)
def set_overload(self, element_number, overload):
r"""
Returns :
*args : Integer element_number,Float overload
C prototype: int cbf_set_overload (cbf_handle handle,
unsigned int element_number, double overload);
CBFLib documentation:
DESCRIPTION
cbf_set_overload sets the overload value of element number
element_number to overload.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. overload New overload value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_overload(self, element_number, overload)
def get_image_size(self, element_number):
r"""
Returns : size_t ndim1,size_t ndim2
*args : Integer element_number
C prototype: int cbf_get_image_size (cbf_handle handle, unsigned int reserved,
unsigned int element_number, size_t *ndimslow,
size_t *ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image_size, cbf_get_image_size_fs and cbf_get_image_size_sf
set *ndimslow and *ndimfast to the slow and fast dimensions of the
image array for element number element_number. If the array is
1-dimensional, *ndimslow will be set to the array size and *ndimfast
will be set to 1. If the array is 3-dimensional an error code will be
returned. cbf_get_3d_image_size, cbf_get_3d_image_size_fs and
cbf_get_3d_image_size_sf set *ndimslow, *ndimmid and *ndimfast to the
slowest, next fastest and fastest dimensions, respectively, of the 3D
image array for element number element_number. If the array is
1-dimensional, *ndimslow will be set to the array size and *ndimmid
and
"""
return _py2cbf.cbf_handle_struct_get_image_size(self, element_number)
def set_3d_image_sf(self, element_number, compression, data, elsize, elsign, ndimslow, ndimmid, ndimfast):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int elsign,int dimslow,int dimmid,int dimfast
C prototype: int cbf_set_3d_image_sf(cbf_handle handle, unsigned int reserved,
unsigned int element_number, unsigned int compression,
void *array, size_t elsize, int elsign, size_t ndimslow,
size_t ndimmid, size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_3d_image_sf(self, element_number, compression, data, elsize, elsign, ndimslow, ndimmid, ndimfast)
def get_real_image_sf_as_string(self, element_number, elsize, ndimslow, ndimfast):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int ndimslow,int ndimfast
C prototype: int cbf_get_real_image_sf (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
void *array, size_t elsize, size_t ndimslow,
size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_real_image_sf_as_string(self, element_number, elsize, ndimslow, ndimfast)
def get_image_as_string(self, element_number, elsize, elsign, ndimslow, ndimfast):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int elsign,int ndimslow,int ndimfast
C prototype: int cbf_get_image (cbf_handle handle, unsigned int reserved,
unsigned int element_number, void *array, size_t elsize,
int elsign, size_t ndimslow, size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_image_as_string(self, element_number, elsize, elsign, ndimslow, ndimfast)
def set_tag_root(self, tagname, tagroot_in):
r"""
Returns :
*args : String tagname,String tagroot_in
C prototype: int cbf_set_tag_root (cbf_handle handle, const char* tagname,
const char*tagroot_in);
CBFLib documentation:
DESCRIPTION
cbf_find_tag_root sets *tagroot to the root tag of which tagname is
an alias. cbf_set_tag_root sets tagname as an alias of tagroot_in in
the dictionary associated with handle, creating the dictionary if
necessary. cbf_require_tag_root sets *tagroot to the root tag of
which tagname is an alias, if there is one, or to the value of
tagname, if tagname is not an alias.
A returned tagroot string must not be modified in any way.
ARGUMENTS
handle CBF handle. tagname tag name which may be an alias.
tagroot pointer to a returned tag root name. tagroot_in input
tag root name.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_tag_root(self, tagname, tagroot_in)
def write_widefile(self, filename, ciforcbf, headers, encoding):
r"""
Returns :
*args : String filename,Integer ciforcbf,Integer Headers,Integer encoding
C prototype: int cbf_write_widefile (cbf_handle handle, FILE *file,
int readable, int ciforcbf, int flags, int encoding);
CBFLib documentation:
DESCRIPTION
cbf_write_file writes the CBF object specified by handle into the
file file, following CIF 1.0 conventions of 80 character lines.
cbf_write_widefile writes the CBF object specified by handle into the
file file, following CIF 1.1 conventions of 2048 character lines. A
warning is issued to stderr for ascii lines over the limit, and an
attempt is made to fold lines to fit. No test is performed on binary
sections.
If a dictionary has been provided, aliases will be applied on output.
Unlike cbf_read_file, the file does not have to be random-access.
If the file is random-access and readable, readable can be set to
non-0 to indicate to CBFlib that the file can be used as a buffer to
conserve disk space. If the file is not random-access or not
readable, readable must be 0.
"""
return _py2cbf.cbf_handle_struct_write_widefile(self, filename, ciforcbf, headers, encoding)
def count_rows(self):
r"""
Returns : Integer
*args :
C prototype: int cbf_count_rows (cbf_handle handle, unsigned int *rows);
CBFLib documentation:
DESCRIPTION
cbf_count_rows puts the number of rows in the current category in
*rows .
ARGUMENTS
handle CBF handle. rows Pointer to the destination row count.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_count_rows(self)
def require_datablock(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_require_datablock (cbf_handle handle,
const char *datablockname);
CBFLib documentation:
DESCRIPTION
cbf_require_datablock makes the data block with name datablockname
the current data block, if it exists, or creates it if it does not.
The comparison is case-insensitive.
The current category becomes undefined.
ARGUMENTS
handle CBF handle. datablockname The name of the data
block to find or create.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_require_datablock(self, arg)
def set_integerarray(self, compression, binary_id, data, elsize, elsigned, elements):
r"""
Returns :
*args : int compression,int binary_id,(binary) String data,int elsize,
int elsigned,int elements
C prototype: int cbf_set_integerarray (cbf_handle handle,
unsigned int compression, int binary_id, void *array,
size_t elsize, int elsigned, size_t elements);
CBFLib documentation:
DESCRIPTION
cbf_set_integerarray sets the binary value of the item at the current
column and row to an integer array. The array consists of elements
elements of elsize bytes each, starting at array. The elements are
signed if elsigned is non-0 and unsigned otherwise. binary_id is the
binary section identifier. cbf_set_realarray sets the binary value of
the item at the current column and row to an integer array. The array
consists of elements elements of elsize bytes each, starting at
array. binary_id is the binary section identifier.
The cbf_set_integerarray_wdims, cbf_set_integerarray_wdims_fs,
cbf_set_integerarray_wdims_sf, cbf_set_realarray_wdims,
cbf_set_realarray_wdims_fs and cbf_set_realarray_wdims_sf variants
allow the data header values of byteorder, dimfast, dimmid, dimslow
and padding to be set to the data byte order, the fastest, second
fastest and third fastest array dimensions and the size in byte of
the post data padding to be used.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
NOTE: This scheme is by far the slowest of the four and uses much
more disk space. It is intended for routine use with small arrays
only. With large arrays (like images) it should be used only for
debugging.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned), for cbf_set_integerarray, or IEEE doubles or
floats for cbf_set_realarray. If elsize is not equal to sizeof
(char), sizeof (short) or sizeof (int), the function returns
CBF_ARGUMENT.
ARGUMENTS
handle CBF handle. compression Compression method to use.
binary_id Integer binary identifier. array Pointer to the
source array. elsize Size in bytes of each source array
element. elsigned Set to non-0 if the source array elements are
signed. elements The number of elements in the array
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_integerarray(self, compression, binary_id, data, elsize, elsigned, elements)
def new_datablock(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_new_datablock (cbf_handle handle,
const char *datablockname);
CBFLib documentation:
DESCRIPTION
cbf_new_datablock creates a new data block with name datablockname
and makes it the current data block. cbf_new_saveframe creates a new
save frame with name saveframename within the current data block and
makes the new save frame the current save frame.
If a data block or save frame with this name already exists, the
existing data block or save frame becomes the current data block or
save frame.
ARGUMENTS
handle CBF handle. datablockname The name of the new data
block. saveframename The name of the new save frame.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_new_datablock(self, arg)
def set_datestamp(self, year, month, day, hour, minute, second, timezone, precision):
r"""
Returns :
*args : int year,int month,int day,int hour,int minute,double second,
int timezone,Float precision
C prototype: int cbf_set_datestamp (cbf_handle handle, unsigned int reserved,
int year, int month, int day, int hour, int minute,
double second, int timezone, double precision);
CBFLib documentation:
DESCRIPTION
cbf_set_datestamp sets the collection timestamp in seconds since
January 1 1970 to the value specified by time. The timezone
difference from UTC
"""
return _py2cbf.cbf_handle_struct_set_datestamp(self, year, month, day, hour, minute, second, timezone, precision)
def next_row(self):
r"""
Returns :
*args :
C prototype: int cbf_next_row (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_next_row makes the row following the current row in the current
category the current row.
If there are no more rows, the function returns CBF_NOTFOUND.
The current column is not affected.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_next_row(self)
def set_category_root(self, categoryname, categoryroot):
r"""
Returns :
*args : String categoryname,String categoryroot
C prototype: int cbf_set_category_root (cbf_handle handle,
const char* categoryname_in, const char*categoryroot);
CBFLib documentation:
DESCRIPTION
cbf_find_category_root sets *categoryroot to the root category of
which categoryname is an alias. cbf_set_category_root sets
categoryname_in as an alias of categoryroot in the dictionary
associated with handle, creating the dictionary if necessary.
cbf_require_category_root sets *categoryroot to the root category of
which categoryname is an alias, if there is one, or to the value of
categoryname, if categoryname is not an alias.
A returned categoryroot string must not be modified in any way.
ARGUMENTS
handle CBF handle. categoryname category name which
may be an alias. categoryroot pointer to a returned category
root name. categoryroot_in input category root name.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_category_root(self, categoryname, categoryroot)
def get_axis_offset(self, axis_id):
r"""
Returns : Float offset1,Float offset2,Float offset3
*args : String axis_id
C prototype: int cbf_get_axis_offset (cbf_handle handle, const char *axis_id,
double *offset1, double *offset2, double *offset3);
CBFLib documentation:
DESCRIPTION
cbf_count_axis_ancestors sets ancestors to the number of ancestors of
axis axis_id. cbf_get_axis_ancestor sets *ancestor to the ancestor
axis of index ancestor_index of axis axis_id, starting with axis_id
for ancestor_index 0.
cbf_get_axis_depends_on sets *depends_on to the immediate ancestor of
axis_id or to ". " if there is no such ancestor.
cbf_get_axis_equipment sets *equipment to the equipment of axis_id or
to ". " if there is no such equipment.
cbf_get_axis_equipment_component sets *equipment_component to the
equipment_component of axis_id or to ". " if there is no such
equipment_component.
cbf_get_axis_offset sets *offset1, *offset2 and *offset3 to the
components of the ofset of axis_id.
cbf_get_axis_rotation sets rotation to the rotation of axis_id or to
0 if there is no such rotation. cbf_get_axis_rotation_axis sets
*rotation_axis to the rotation_axis of axis_id or to ". " if there
is no such rotation_axis.
cbf_get_axis_setting sets *start and *increment to the corresponding
values of the axis axis_id. Any of the destination pointers may be
NULL.
cbf_get_axis_type sets axis_type to the type of axis_id.
cbf_get_axis_vector sets *vector1, *vector2 and *vector3 to the
components of the vector of axis_id.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any
value other than 0 is invalid. axis_id Axis id.
ancestor_index Integer index of the desired ancestor, starting
with 0 for the current axis_id. ancestor Pointer to
destination ancestor name pointer. depends_on Pointer to
destination depends_on name pointer. equipment Pointer to
destination equipment name pointer. equipment_component Pointer to
destination equipment_component name pointer. offset1
Pointer to destination first offset component value. offset2
Pointer to destination second offset component value. offset3
Pointer to destination third offset component value.
rotation Pointer to destination rotation value.
rotation_axis Pointer to destination rotation_axisn name
pointer. start Pointer to the destination start
value. increment Pointer to the destination increment
value. type Pointer to destination axis type of type
. vector1 Pointer to destination first vector component
value. vector2 Pointer to destination second vector
component value. vector3 Pointer to destination third
vector component value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_offset(self, axis_id)
def set_pixel_size_fs(self, element_number, axis_number, psize):
r"""
Returns :
*args : Int element_number,Int axis_number,Float pixel size
C prototype: int cbf_set_pixel_size_fs(cbf_handle handle,
unsigned int element_number, int axis_number,
double psize);
CBFLib documentation:
DESCRIPTION
cbf_set_pixel_size and cbf_set_pixel_size_sf set the item in the
"size " column of the "array_structure_list " category at the
row which matches axis axis_number of the detector element
element_number converting the double pixel size psize from meters to
millimeters in storing it in the "size " column for the axis
axis_number of the detector element element_number. The axis_number
is numbered from 1, starting with the slowest axis.
cbf_set_pixel_size_fs sets the item in the "size " column of the
"array_structure_list " category at the row which matches axis
axis_number of the detector element element_number converting the
double pixel size psize from meters to millimeters in storing it in
the "size " column for the axis axis_number of the detector
element element_number. The axis_number is numbered from 1, starting
with the fastest axis.
If a negative axis number is given, the order of axes is reversed, so
that -1 specifies the slowest axis for cbf_get_pixel_size_fs and the
fastest axis for cbf_get_pixel_size_sf.
If the "array_structure_list " category does not already exist, it
is created.
If the appropriate row in the "array_structure_list " catgeory
does not already exist, it is created.
If the pixel size is not given explcitly in the "array_element_size
category ", the function returns CBF_NOTFOUND.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. axis_number The number of the
axis, fastest first, starting from 1.
"""
return _py2cbf.cbf_handle_struct_set_pixel_size_fs(self, element_number, axis_number, psize)
def insert_row(self, arg):
r"""
Returns :
*args : Integer
C prototype: int cbf_insert_row (cbf_handle handle, unsigned int rownumber);
CBFLib documentation:
DESCRIPTION
cbf_insert_row adds a new row to the current category. The new row is
inserted as row rownumber and existing rows starting from rownumber
are moved up by 1. The new row becomes the current row.
If the category has fewer than rownumber rows, the function returns
CBF_NOTFOUND.
The row numbers start from 0.
ARGUMENTS
handle CBF handle. rownumber The row number of the new row.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_insert_row(self, arg)
def new_column(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_new_column (cbf_handle handle, const char *columnname);
CBFLib documentation:
DESCRIPTION
cbf_new_column creates a new column in the current category with name
columnname and makes it the current column.
If a column with this name already exists, the existing column
becomes the current category.
ARGUMENTS
handle CBF handle. columnname The name of the new column.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_new_column(self, arg)
def get_real_3d_image_as_string(self, element_number, elsize, ndimslow, ndimmid, ndimfast):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int ndimslow,int ndimmid,int ndimfast
C prototype: int cbf_get_real_3d_image (cbf_handle handle,
unsigned int reserved, unsigned int element_number,
void *array, size_t elsize, size_t ndimslow,
size_t ndimmid, size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_real_3d_image_as_string(self, element_number, elsize, ndimslow, ndimmid, ndimfast)
def get_integration_time(self):
r"""
Returns : Float time
*args :
C prototype: int cbf_get_integration_time (cbf_handle handle,
unsigned int reserved, double *time);
CBFLib documentation:
DESCRIPTION
cbf_get_integration_time sets *time to the integration time in
seconds. The parameter reserved is presently unused and should be set
to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other than 0 is
invalid. time Pointer to the destination time.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_integration_time(self)
def set_realarray(self, compression, binary_id, data, elsize, elements):
r"""
Returns :
*args : int compression,int binary_id,(binary) String data,int elsize,
int elements
C prototype: int cbf_set_realarray (cbf_handle handle,
unsigned int compression, int binary_id, void *array,
size_t elsize, size_t elements);
CBFLib documentation:
DESCRIPTION
cbf_set_integerarray sets the binary value of the item at the current
column and row to an integer array. The array consists of elements
elements of elsize bytes each, starting at array. The elements are
signed if elsigned is non-0 and unsigned otherwise. binary_id is the
binary section identifier. cbf_set_realarray sets the binary value of
the item at the current column and row to an integer array. The array
consists of elements elements of elsize bytes each, starting at
array. binary_id is the binary section identifier.
The cbf_set_integerarray_wdims, cbf_set_integerarray_wdims_fs,
cbf_set_integerarray_wdims_sf, cbf_set_realarray_wdims,
cbf_set_realarray_wdims_fs and cbf_set_realarray_wdims_sf variants
allow the data header values of byteorder, dimfast, dimmid, dimslow
and padding to be set to the data byte order, the fastest, second
fastest and third fastest array dimensions and the size in byte of
the post data padding to be used.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
NOTE: This scheme is by far the slowest of the four and uses much
more disk space. It is intended for routine use with small arrays
only. With large arrays (like images) it should be used only for
debugging.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned), for cbf_set_integerarray, or IEEE doubles or
floats for cbf_set_realarray. If elsize is not equal to sizeof
(char), sizeof (short) or sizeof (int), the function returns
CBF_ARGUMENT.
ARGUMENTS
handle CBF handle. compression Compression method to use.
binary_id Integer binary identifier. array Pointer to the
source array. elsize Size in bytes of each source array
element. elsigned Set to non-0 if the source array elements are
signed. elements The number of elements in the array
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_realarray(self, compression, binary_id, data, elsize, elements)
def get_element_id(self, element_number):
r"""
Returns : String
*args : Integer element_number
C prototype: int cbf_get_element_id (cbf_handle handle,
unsigned int element_number, const char **element_id);
CBFLib documentation:
DESCRIPTION
cbf_get_element_number sets element_number to a number that can be
used in other cbf_simple calls to identify the detector element
element_id and optionally the specific array_id> and
array_section_id. cbf_get_element_id sets *element_id to point to the
ASCII value of the element_number'th
"diffrn_data_frame.detector_element_id " entry, counting from 0.
The element_number is the ordinal of the detector element in the
DIFFRN_DETECTOR_ELEMENT category. If an array_section_id is specified
(i.e. is not NULL), the element_number is the sum of the ordinal of
the detector element plus the number of detector elements multiplied
by the ordinal of array_section_id for the specified array_id> in the
ARRAY_STRUCTURE_LIST_SECTION category.
If the detector element does not exist, the function returns
CBF_NOTFOUND.
The element_id will be valid as long as the item exists and has not
been set to a new value.
The element_id must not be modified by the program in any way.
ARGUMENTS
handle CBF handle. element_number The number of the
detector element counting from 0 by order of appearance in the
"diffrn_data_frame " category. element_id Pointer to the
destination string for cbf_get_element_id, but the string itself for
cbf_get_element_number. array_id The optional array id or
NULL. array_section_id The optional array_section_id or NULL.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_element_id(self, element_number)
def get_image_sf_as_string(self, element_number, elsize, elsign, ndimslow, ndimfast):
r"""
Returns : (Binary)String
*args : int element_number,int elsize,int elsign,int ndimslow,int ndimfast
C prototype: int cbf_get_image_sf (cbf_handle handle, unsigned int reserved,
unsigned int element_number, void *array, size_t elsize,
int elsign, size_t ndimslow, size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_get_image, cbf_get_image_fs and cbf_get_image_sf read the image
array for element number element_number into an array. The array
consists of ndimslow×ndimfast elements of elsize bytes each,
starting at array. The elements are signed if elsign is non-0 and
unsigned otherwise. cbf_get_real_image, cbf_get_real_image_fs and
cbf_get_real_image_sf read the image array of IEEE doubles or floats
for element number element_number into an array. A real array is
always signed. cbf_get_3d_image, cbf_get_3d_image_fs and
cbf_get_3d_image_sf read the 3D image array for element number
element_number into an array. The array consists of
ndimslow×ndimmid×ndimfast elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_get_real_3d_image, cbf_get_real_3d_image_fs,
cbf_get_real_3d_image_sf reads the 3D image array of IEEE doubles or
floats for element number element_number into an array. A real array
is always signed.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
The structure of the array as a 1-, 2- or 3-dimensional array should
agree with the structure of the array given in the
ARRAY_STRUCTURE_LIST category. If the array is 1-dimensional,
ndimslow should be the array size and ndimfast and, for the 3D calls,
ndimmid, should be set to 1 both in the call and in the imgCIF data
being processed. If the array is 2-dimensional and a 3D call is used,
ndimslow and ndimmid should be the
"""
return _py2cbf.cbf_handle_struct_get_image_sf_as_string(self, element_number, elsize, elsign, ndimslow, ndimfast)
def construct_positioner(self, axis_id):
r"""
Returns : pycbf positioner object
*args : String axis_id
C prototype: int cbf_construct_positioner (cbf_handle handle,
cbf_positioner *positioner, const char *axis_id);
CBFLib documentation:
DESCRIPTION
cbf_construct_positioner constructs a positioner object for the axis
given by axis_id using the description in the CBF object handle and
initialises the positioner handle *positioner.
cbf_construct_reference positioner constructs a positioner object for
the axis given by axis_id using the description in the CBF object
handle and initialises the detector handle *detector using the
reference settings of the axes.
ARGUMENTS
handle CBF handle. positioner Pointer to the destination
positioner handle. axis_id The identifier of the axis in the
"axis " category.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_construct_positioner(self, axis_id)
def get_3d_image_size_fs(self, element_number):
r"""get_3d_image_size_fs(cbf_handle_struct self, unsigned int element_number)"""
return _py2cbf.cbf_handle_struct_get_3d_image_size_fs(self, element_number)
def set_value(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_set_value (cbf_handle handle, const char *value);
CBFLib documentation:
DESCRIPTION
cbf_set_value sets the item at the current column and row to the
ASCII value value.
ARGUMENTS
handle CBF handle. value ASCII value.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_value(self, arg)
def set_current_timestamp(self, timezone):
r"""
Returns :
*args : Integer timezone
C prototype: int cbf_set_current_timestamp (cbf_handle handle,
unsigned int reserved, int timezone);
CBFLib documentation:
DESCRIPTION
cbf_set_current_timestamp sets the collection timestamp to the
current time. The timezone difference from UTC in minutes is set to
timezone. If no timezone is desired, timezone should be
CBF_NOTIMEZONE. If no timezone is used, the timest amp will be UTC.
The parameter reserved is presently unused and should be set to 0.
The new timestamp will have a precision of 1 second.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other than 0 is
invalid. timezone Timezone difference from UTC in minutes or
CBF_NOTIMEZONE.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_current_timestamp(self, timezone)
def require_doublevalue(self, defaultvalue):
r"""
Returns : Float Number
*args : Float Default
C prototype: int cbf_require_doublevalue (cbf_handle handle, double *number,
double defaultvalue);
CBFLib documentation:
DESCRIPTION
cbf_get_doublevalue sets *number to the value of the ASCII item at
the current column and row interpreted as a decimal floating-point
number. cbf_require_doublevalue sets *number to the value of the
ASCII item at the current column and row interpreted as a decimal
floating-point number, setting it to defaultvalue if necessary.
If the value is not ASCII, the function returns CBF_BINARY.
ARGUMENTS
handle CBF handle. number Pointer to the destination
number. defaultvalue default number value.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_require_doublevalue(self, defaultvalue)
def rewind_datablock(self):
r"""
Returns :
*args :
C prototype: int cbf_rewind_datablock (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_rewind_datablock makes the first data block the current data
block.
If there are no data blocks, the function returns CBF_NOTFOUND.
The current category becomes undefined.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_rewind_datablock(self)
def require_column_value(self, columnname, defaultvalue):
r"""
Returns : String Name
*args : String columnnanme,String Default
C prototype: int cbf_require_column_value (cbf_handle handle,
const char *columnname, const char **value,
const char *defaultvalue);
CBFLib documentation:
DESCRIPTION
cbf_require_column_doublevalue sets *value to the ASCII item at the
current row for the column given with the name given by *columnname,
or to the string given by defaultvalue if the item cannot be found.
ARGUMENTS
handle CBF handle. columnname Name of the column
containing the number. value pointer to the location to
receive the value. defaultvalue Value to use if the requested
column and value cannot be found.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_require_column_value(self, columnname, defaultvalue)
def get_dictionary(self):
r"""
Returns : CBFHandle dictionary
*args :
C prototype: int cbf_get_dictionary (cbf_handle handle,
cbf_handle * dictionary);
CBFLib documentation:
DESCRIPTION
cbf_get_dictionary sets *dictionary to the handle of a CBF which has
been associated with the CBF handle by cbf_set_dictionary.
cbf_set_dictionary associates the CBF handle dictionary_in with
handle as its dictionary. cbf_require_dictionary sets *dictionary to
the handle of a CBF which has been associated with the CBF handle by
cbf_set_dictionary or creates a new empty CBF and associates it with
handle, returning the new handle in *dictionary.
ARGUMENTS
handle CBF handle. dictionary Pointer to CBF handle of
dictionary. dictionary_in CBF handle of dcitionary.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_dictionary(self)
def reset_saveframe(self):
r"""
Returns :
*args :
C prototype: int cbf_reset_saveframe (cbf_handle handle);
CBFLib documentation:
DESCRIPTION
cbf_reset_datablock deletes all categories from the current data
block. cbf_reset_saveframe deletes all categories from the current
save frame.
ARGUMENTS
handle CBF handle.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_reset_saveframe(self)
def set_reciprocal_cell(self, cell):
r"""
Returns :
*args : double cell[6]
C prototype: int cbf_set_reciprocal_cell (cbf_handle handle, double cell[6],
double cell_esd[6] );
CBFLib documentation:
DESCRIPTION
cbf_set_reciprocal_cell sets the reciprocal cell parameters to the
double values given in cell[0:2] for the reciprocal cell edge lengths
a^*, b^* and c^* in Ångstroms^-1, the double values given in
cell[3:5] for the reciprocal cell angles α^*, β^* and γ^* in
degrees, the double values given in cell_esd[0:2] for the estimated
strandard deviations of the reciprocal cell edge lengths a^*, b^* and
c^* in Ångstroms, and the double values given in cell_esd[3:5] for
the estimated standard deviations of the reciprocal cell angles α^*,
β^* and γ^* in degrees.
The values are placed in the first row of the "cell " category. If
no value has been given for "_cell.entry_id ", it is set to the
value of the "diffrn.id " entry of the current data block.
cell or cell_esd may be NULL.
If cell is NULL, the reciprocal cell parameters are not set.
If cell_esd is NULL, the reciprocal cell parameter esds are not set.
If the "cell " category is not present, it is created. If any of
the necessary columns are not present, they are created.
ARGUMENTS
handle CBF handle. cell Pointer to the array of 6 doubles
for the reciprocal cell parameters. cell_esd Pointer to the array
of 6 doubles for the reciprocal cell parameter esds.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_reciprocal_cell(self, cell)
def set_reciprocal_cell_esd(self, cell_esd):
r"""
Returns :
*args : double cell_esd[6]
C prototype: int cbf_set_reciprocal_cell (cbf_handle handle, double cell[6],
double cell_esd[6] );
CBFLib documentation:
DESCRIPTION
cbf_set_reciprocal_cell sets the reciprocal cell parameters to the
double values given in cell[0:2] for the reciprocal cell edge lengths
a^*, b^* and c^* in Ångstroms^-1, the double values given in
cell[3:5] for the reciprocal cell angles α^*, β^* and γ^* in
degrees, the double values given in cell_esd[0:2] for the estimated
strandard deviations of the reciprocal cell edge lengths a^*, b^* and
c^* in Ångstroms, and the double values given in cell_esd[3:5] for
the estimated standard deviations of the reciprocal cell angles α^*,
β^* and γ^* in degrees.
The values are placed in the first row of the "cell " category. If
no value has been given for "_cell.entry_id ", it is set to the
value of the "diffrn.id " entry of the current data block.
cell or cell_esd may be NULL.
If cell is NULL, the reciprocal cell parameters are not set.
If cell_esd is NULL, the reciprocal cell parameter esds are not set.
If the "cell " category is not present, it is created. If any of
the necessary columns are not present, they are created.
ARGUMENTS
handle CBF handle. cell Pointer to the array of 6 doubles
for the reciprocal cell parameters. cell_esd Pointer to the array
of 6 doubles for the reciprocal cell parameter esds.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_reciprocal_cell_esd(self, cell_esd)
def set_real_3d_image_fs(self, element_number, compression, data, elsize, ndimfast, ndimmid, ndimslow):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int dimfast,int dimmid,int dimslow
C prototype: int cbf_set_real_3d_image_fs(cbf_handle handle,
unsigned int reserved, unsigned int element_number,
unsigned int compression, void *array,size_t elsize,
size_t ndimfast, size_t ndimmid, size_t ndimslow);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_real_3d_image_fs(self, element_number, compression, data, elsize, ndimfast, ndimmid, ndimslow)
def set_doublevalue(self, format, number):
r"""
Returns :
*args : String format,Float number
C prototype: int cbf_set_doublevalue (cbf_handle handle, const char *format,
double number);
CBFLib documentation:
DESCRIPTION
cbf_set_doublevalue sets the item at the current column and row to
the floating-point value number written as an ASCII string with the
format specified by format as appropriate for the printf function.
ARGUMENTS
handle CBF handle. format Format for the number. number
Floating-point value.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_doublevalue(self, format, number)
def find_category(self, arg):
r"""
Returns : string
*args :
C prototype: int cbf_find_category (cbf_handle handle,
const char *categoryname);
CBFLib documentation:
DESCRIPTION
cbf_find_category makes the category in the current data block with
name categoryname the current category.
The comparison is case-insensitive.
If the category does not exist, the function returns CBF_NOTFOUND.
The current column and row become undefined.
ARGUMENTS
handle CBF handle. categoryname The name of the category to
find.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_find_category(self, arg)
def get_integerarrayparameters_wdims_fs(self):
r"""
Returns : int compression,int binary_id,int elsize,int elsigned,int elunsigned,
int elements,int minelement,int maxelement,char **bo,int *bolen,
int dimfast,int dimmid,int dimslow,int padding
*args :
C prototype: int cbf_get_integerarrayparameters_wdims_fs (cbf_handle handle,
unsigned int *compression, int *binary_id, size_t *elsize,
int *elsigned, int *elunsigned, size_t *elements,
int *minelement, int *maxelement, const char **byteorder,
size_t *dimfast, size_t *dimmid, size_t *dimslow,
size_t *padding);
CBFLib documentation:
DESCRIPTION
cbf_get_integerarrayparameters sets *compression, *binary_id,
*elsize, *elsigned, *elunsigned, *elements, *minelement and
*maxelement to values read from the binary value of the item at the
current column and row. This provides all the arguments needed for a
subsequent call to cbf_set_integerarray, if a copy of the array is to
be made into another CIF or CBF. cbf_get_realarrayparameters sets
*compression, *binary_id, *elsize, *elements to values read from the
binary value of the item at the current column and row. This provides
all the arguments needed for a subsequent call to cbf_set_realarray,
if a copy of the arry is to be made into another CIF or CBF.
The variants cbf_get_integerarrayparameters_wdims,
cbf_get_integerarrayparameters_wdims_fs,
cbf_get_integerarrayparameters_wdims_sf,
cbf_get_realarrayparameters_wdims,
cbf_get_realarrayparameters_wdims_fs,
cbf_get_realarrayparameters_wdims_sf set **byteorder, *dimfast,
*dimmid, *dimslow, and *padding as well, providing the additional
parameters needed for a subsequent call to cbf_set_integerarray_wdims
or cbf_set_realarray_wdims.
The value returned in *byteorder is a pointer either to the string
"little_endian " or to the string "big_endian ". This should be
the byte order of the data, not necessarily of the host machine. No
attempt should be made to modify this string. At this time only
"little_endian " will be returned.
The values returned in *dimfast, *dimmid and *dimslow are the sizes
of the fastest changing, second fastest changing and third fastest
changing dimensions of the array, if specified, or zero, if not
specified.
The value returned in *padding is the size of the post-data padding,
if any and if specified in the data header. The value is given as a
count of octets.
If the value is not binary, the function returns CBF_ASCII.
ARGUMENTS
handle CBF handle. compression Compression method used.
elsize Size in bytes of each array element. binary_id
Pointer to the destination integer binary identifier. elsigned
Pointer to an integer. Set to 1 if the elements can be read as signed
integers. elunsigned Pointer to an integer. Set to 1 if the
elements can be read as unsigned integers. elements Pointer to
the destination number of elements. minelement Pointer to the
destination smallest element. maxelement Pointer to the
destination largest element. byteorder Pointer to the destination
byte order. dimfast Pointer to the destination fastest
dimension. dimmid Pointer to the destination second fastest
dimension. dimslow Pointer to the destination third fastest
dimension. padding Pointer to the destination padding size.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_get_integerarrayparameters_wdims_fs(self)
def set_realarray_wdims_fs(self, compression, binary_id, data, elsize, elements, bo, dimfast, dimmid, dimslow, padding):
r"""
Returns :
*args : int compression,int binary_id,(binary) String data,int elsize,
int elements,String byteorder,int dimfast,int dimmid,int dimslow,
int padding
C prototype: int cbf_set_realarray_wdims_fs (cbf_handle handle,
unsigned int compression, int binary_id, void *array,
size_t elsize, size_t elements, const char *byteorder,
size_t dimfast, size_t dimmid, size_t dimslow,
size_t padding);
CBFLib documentation:
DESCRIPTION
cbf_set_integerarray sets the binary value of the item at the current
column and row to an integer array. The array consists of elements
elements of elsize bytes each, starting at array. The elements are
signed if elsigned is non-0 and unsigned otherwise. binary_id is the
binary section identifier. cbf_set_realarray sets the binary value of
the item at the current column and row to an integer array. The array
consists of elements elements of elsize bytes each, starting at
array. binary_id is the binary section identifier.
The cbf_set_integerarray_wdims, cbf_set_integerarray_wdims_fs,
cbf_set_integerarray_wdims_sf, cbf_set_realarray_wdims,
cbf_set_realarray_wdims_fs and cbf_set_realarray_wdims_sf variants
allow the data header values of byteorder, dimfast, dimmid, dimslow
and padding to be set to the data byte order, the fastest, second
fastest and third fastest array dimensions and the size in byte of
the post data padding to be used.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
NOTE: This scheme is by far the slowest of the four and uses much
more disk space. It is intended for routine use with small arrays
only. With large arrays (like images) it should be used only for
debugging.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned), for cbf_set_integerarray, or IEEE doubles or
floats for cbf_set_realarray. If elsize is not equal to sizeof
(char), sizeof (short) or sizeof (int), the function returns
CBF_ARGUMENT.
ARGUMENTS
handle CBF handle. compression Compression method to use.
binary_id Integer binary identifier. array Pointer to the
source array. elsize Size in bytes of each source array
element. elsigned Set to non-0 if the source array elements are
signed. elements The number of elements in the array
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_realarray_wdims_fs(self, compression, binary_id, data, elsize, elements, bo, dimfast, dimmid, dimslow, padding)
def find_category_root(self, categoryname):
r"""
Returns : String categoryroot
*args : String categoryname
C prototype: int cbf_find_category_root (cbf_handle handle,
const char* categoryname, const char** categoryroot);
CBFLib documentation:
DESCRIPTION
cbf_find_category_root sets *categoryroot to the root category of
which categoryname is an alias. cbf_set_category_root sets
categoryname_in as an alias of categoryroot in the dictionary
associated with handle, creating the dictionary if necessary.
cbf_require_category_root sets *categoryroot to the root category of
which categoryname is an alias, if there is one, or to the value of
categoryname, if categoryname is not an alias.
A returned categoryroot string must not be modified in any way.
ARGUMENTS
handle CBF handle. categoryname category name which
may be an alias. categoryroot pointer to a returned category
root name. categoryroot_in input category root name.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_find_category_root(self, categoryname)
def set_integerarray_wdims_fs(self, compression, binary_id, data, elsize, elsigned, elements, bo, dimfast, dimmid, dimslow, padding):
r"""
Returns :
*args : int compression,int binary_id,(binary) String data,int elsize,
int elsigned,int elements,String byteorder,int dimfast,int dimmid,
int dimslow,int padding
C prototype: int cbf_set_integerarray_wdims_fs (cbf_handle handle,
unsigned int compression, int binary_id, void *array,
size_t elsize, int elsigned, size_t elements,
const char *byteorder, size_t dimfast, size_t dimmid,
size_t dimslow, size_t padding);
CBFLib documentation:
DESCRIPTION
cbf_set_integerarray sets the binary value of the item at the current
column and row to an integer array. The array consists of elements
elements of elsize bytes each, starting at array. The elements are
signed if elsigned is non-0 and unsigned otherwise. binary_id is the
binary section identifier. cbf_set_realarray sets the binary value of
the item at the current column and row to an integer array. The array
consists of elements elements of elsize bytes each, starting at
array. binary_id is the binary section identifier.
The cbf_set_integerarray_wdims, cbf_set_integerarray_wdims_fs,
cbf_set_integerarray_wdims_sf, cbf_set_realarray_wdims,
cbf_set_realarray_wdims_fs and cbf_set_realarray_wdims_sf variants
allow the data header values of byteorder, dimfast, dimmid, dimslow
and padding to be set to the data byte order, the fastest, second
fastest and third fastest array dimensions and the size in byte of
the post data padding to be used.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
NOTE: This scheme is by far the slowest of the four and uses much
more disk space. It is intended for routine use with small arrays
only. With large arrays (like images) it should be used only for
debugging.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned), for cbf_set_integerarray, or IEEE doubles or
floats for cbf_set_realarray. If elsize is not equal to sizeof
(char), sizeof (short) or sizeof (int), the function returns
CBF_ARGUMENT.
ARGUMENTS
handle CBF handle. compression Compression method to use.
binary_id Integer binary identifier. array Pointer to the
source array. elsize Size in bytes of each source array
element. elsigned Set to non-0 if the source array elements are
signed. elements The number of elements in the array
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_integerarray_wdims_fs(self, compression, binary_id, data, elsize, elsigned, elements, bo, dimfast, dimmid, dimslow, padding)
def set_image_sf(self, element_number, compression, data, elsize, elsign, ndimslow, ndimfast):
r"""
Returns :
*args : int element_number,int compression,(binary) String data,int elsize,
int elsign,int dimslow,int dimfast
C prototype: int cbf_set_image_sf(cbf_handle handle, unsigned int reserved,
unsigned int element_number, unsigned int compression,
void *array, size_t elsize, int elsign, size_t ndimslow,
size_t ndimfast);
CBFLib documentation:
DESCRIPTION
cbf_set_image, cbf_set_image_fs and cbf_set_image_sf write the image
array for element number element_number. The array consists of
ndimfast×ndimslow elements of elsize bytes each, starting at array.
The elements are signed if elsign is non-zero and unsigned otherwise.
cbf_set_real_image, cbf_set_real_image_fs and cbf_set_real_image_sf
write the image array for element number element_number. The array
consists of ndimfast×ndimslow IEEE double or float elements of
elsize bytes each, starting at array. cbf_set_3d_image,
cbf_set_3d_image_fs and cbf_set_3d_image_sf write the 3D image array
for element number element_number. The array consists of
ndimfast×ndimmid×ndimslow elements of elsize bytes each, starting
at array. The elements are signed if elsign is non-0 and unsigned
otherwise. cbf_set_real_3d_image, cbf_set_real_3d_image_fs and
cbf_set_real_3d_image_sf writes the 3D image array for element number
element_number. The array consists of ndimfast×ndimmid×ndimslow
IEEE double or float elements of elsize bytes each, starting at
array.
The _fs calls give the dimensions in a fast-to-slow order. The calls
with no suffix and the calls _sf calls give the dimensions in
slow-to-fast order
If the array is 1-dimensional, ndimslow should be the array size and
ndimfast and, for the 3D calls, ndimmid, should be set to 1. If the
array is 2-dimensional and the 3D calls are used, ndimslow and
ndimmid should be used for the array dimensions and ndimfast should
be set to 1.
The array will be compressed using the compression scheme specifed by
compression. Currently, the available schemes are:
CBF_CANONICAL Canonical-code compression (section 3.3.1)
CBF_PACKED CCP4-style packing (section 3.3.2) CBF_PACKED_V2
CCP4-style packing, version 2 (section 3.3.2) CBF_BYTE_OFFSET
Simple "byte_offset " compression. CBF_NIBBLE_OFFSET Simple
"nibble_offset " compression. CBF_NONE No compression.
The values compressed are limited to 64 bits. If any element in the
array is larger than 64 bits, the value compressed is the nearest
64-bit value.
Currently, the source array must consist of chars, shorts or ints
(signed or unsigned)for cbf_set_image, or IEEE doubles or floats for
cbf_set_real_image. If elsize is not equal to sizeof (short), sizeof
(int), sizeof(double) or sizeof(float), the function returns
CBF_ARGUMENT.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any value other
than 0 is invalid. element_number The number of the detector
element counting from 0 by order of appearance in the
"diffrn_data_frame " category. compression Compression type.
array Pointer to the image array. elsize Size in
bytes of each image array element. elsigned Set to non-0 if
the image array elements are signed. ndimslow Slowest array
dimension. ndimmid Second slowest array dimension. ndimfast
Fastest array dimension.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_set_image_sf(self, element_number, compression, data, elsize, elsign, ndimslow, ndimfast)
def get_axis_equipment(self, axis_id):
r"""
Returns : String
*args : String axis_id
C prototype: int cbf_get_axis_equipment (cbf_handle handle,
const char *axis_id, const char * *equipment);
CBFLib documentation:
DESCRIPTION
cbf_count_axis_ancestors sets ancestors to the number of ancestors of
axis axis_id. cbf_get_axis_ancestor sets *ancestor to the ancestor
axis of index ancestor_index of axis axis_id, starting with axis_id
for ancestor_index 0.
cbf_get_axis_depends_on sets *depends_on to the immediate ancestor of
axis_id or to ". " if there is no such ancestor.
cbf_get_axis_equipment sets *equipment to the equipment of axis_id or
to ". " if there is no such equipment.
cbf_get_axis_equipment_component sets *equipment_component to the
equipment_component of axis_id or to ". " if there is no such
equipment_component.
cbf_get_axis_offset sets *offset1, *offset2 and *offset3 to the
components of the ofset of axis_id.
cbf_get_axis_rotation sets rotation to the rotation of axis_id or to
0 if there is no such rotation. cbf_get_axis_rotation_axis sets
*rotation_axis to the rotation_axis of axis_id or to ". " if there
is no such rotation_axis.
cbf_get_axis_setting sets *start and *increment to the corresponding
values of the axis axis_id. Any of the destination pointers may be
NULL.
cbf_get_axis_type sets axis_type to the type of axis_id.
cbf_get_axis_vector sets *vector1, *vector2 and *vector3 to the
components of the vector of axis_id.
The parameter reserved is presently unused and should be set to 0.
ARGUMENTS
handle CBF handle. reserved Unused. Any
value other than 0 is invalid. axis_id Axis id.
ancestor_index Integer index of the desired ancestor, starting
with 0 for the current axis_id. ancestor Pointer to
destination ancestor name pointer. depends_on Pointer to
destination depends_on name pointer. equipment Pointer to
destination equipment name pointer. equipment_component Pointer to
destination equipment_component name pointer. offset1
Pointer to destination first offset component value. offset2
Pointer to destination second offset component value. offset3
Pointer to destination third offset component value.
rotation Pointer to destination rotation value.
rotation_axis Pointer to destination rotation_axisn name
pointer. start Pointer to the destination start
value. increment Pointer to the destination increment
value. type Pointer to destination axis type of type
. vector1 Pointer to destination first vector component
value. vector2 Pointer to destination second vector
component value. vector3 Pointer to destination third
vector component value.
RETURN VALUE
Returns an error code on failure or 0 for success.
----------------------------------------------------------------------
"""
return _py2cbf.cbf_handle_struct_get_axis_equipment(self, axis_id)
def set_unit_cell(self, cell):
r"""
Returns :
*args : double cell[6]
C prototype: int cbf_set_unit_cell (cbf_handle handle, double cell[6],
double cell_esd[6] );
CBFLib documentation:
DESCRIPTION
cbf_set_unit_cell sets the cell parameters to the double values given
in cell[0:2] for the cell edge lengths a, b and c in Ångstroms, the
double values given in cell[3:5] for the cell angles α, β and γ in
degrees, the double values given in cell_esd[0:2] for the estimated
strandard deviations of the cell edge lengths a, b and c in
Ångstroms, and the double values given in cell_esd[3:5] for the
estimated standard deviations of the the cell angles α, β and γ in
degrees.
The values are placed in the first row of the "cell " category. If
no value has been given for "_cell.entry_id ", it is set to the
value of the "diffrn.id " entry of the current data block.
cell or cell_esd may be NULL.
If cell is NULL, the cell parameters are not set.
If cell_esd is NULL, the cell parameter esds are not set.
If the "cell " category is not present, it is created. If any of
the necessary columns are not present, they are created.
ARGUMENTS
handle CBF handle. cell Pointer to the array of 6 doubles
for the cell parameters. cell_esd Pointer to the array of 6 doubles
for the cell parameter esds.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_unit_cell(self, cell)
def set_unit_cell_esd(self, cell_esd):
r"""
Returns :
*args : double cell_esd[6]
C prototype: int cbf_set_unit_cell (cbf_handle handle, double cell[6],
double cell_esd[6] );
CBFLib documentation:
DESCRIPTION
cbf_set_unit_cell sets the cell parameters to the double values given
in cell[0:2] for the cell edge lengths a, b and c in Ångstroms, the
double values given in cell[3:5] for the cell angles α, β and γ in
degrees, the double values given in cell_esd[0:2] for the estimated
strandard deviations of the cell edge lengths a, b and c in
Ångstroms, and the double values given in cell_esd[3:5] for the
estimated standard deviations of the the cell angles α, β and γ in
degrees.
The values are placed in the first row of the "cell " category. If
no value has been given for "_cell.entry_id ", it is set to the
value of the "diffrn.id " entry of the current data block.
cell or cell_esd may be NULL.
If cell is NULL, the cell parameters are not set.
If cell_esd is NULL, the cell parameter esds are not set.
If the "cell " category is not present, it is created. If any of
the necessary columns are not present, they are created.
ARGUMENTS
handle CBF handle. cell Pointer to the array of 6 doubles
for the cell parameters. cell_esd Pointer to the array of 6 doubles
for the cell parameter esds.
RETURN VALUE
Returns an error code on failure or 0 for success.
SEE ALSO
"""
return _py2cbf.cbf_handle_struct_set_unit_cell_esd(self, cell_esd)
# Register cbf_handle_struct in _pycbf:
_py2cbf.cbf_handle_struct_swigregister(cbf_handle_struct)
|