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LOCUS NC_013363 5686 bp DNA circular BCT 07-OCT-2009
DEFINITION Escherichia coli O26:H11 str. 11368 plasmid pO26_3, complete
sequence.
ACCESSION NC_013363
VERSION NC_013363.1 GI:260751828
DBLINK Project:41021
KEYWORDS .
SOURCE Escherichia coli O26:H11 str. 11368
ORGANISM Escherichia coli O26:H11 str. 11368
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Escherichia.
REFERENCE 1
AUTHORS Ogura,Y., Ooka,T., Iguchi,A., Toh,H., Asadulghani,M., Oshima,K.,
Kodama,T., Abe,H., Nakayama,K., Kurokawa,K., Tobe,T., Hattori,M.
and Hayashi,T.
TITLE Comparative genomics reveal the mechanism of the parallel evolution
of O157 and non-O157 enterohemorrhagic Escherichia coli
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 106 (42), 17939-17944 (2009)
PUBMED 19815525
REFERENCE 2 (bases 1 to 5686)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2009) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5686)
AUTHORS Hattori,M., Toh,H., Oshima,K., Yamashita,A., Hayashi,T., Ogura,Y.
and Ooka,T.
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2008) Contact:Masahira Hattori University of
Tokyo, Graduate School of Frontier Sciences; 5-1-5 Kashiwanoha,
Kashiwa, Chiba 277-8562, Japan URL
:http://www.cb.k.u-tokyo.ac.jp/hattorilab/
COMMENT The reference sequence is identical to AP010956.
PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..5686
/organism="Escherichia coli O26:H11 str. 11368"
/mol_type="genomic DNA"
/strain="11368"
/serovar="O26:H11"
/db_xref="taxon:573235"
/plasmid="pO26_3"
/note="enteropathogenic Escherichia coli"
gene 3..140
/locus_tag="ECO26_p3-1"
/db_xref="GeneID:8470643"
CDS 3..140
/locus_tag="ECO26_p3-1"
/codon_start=1
/transl_table=11
/product="putative mobilization protein 1"
/protein_id="YP_003232550.1"
/db_xref="GI:260751829"
/db_xref="GeneID:8470643"
/translation="MSEVFTVIPETCEAAAVKLIGVVVKRFTDICLFICVQFVKFLQQ
R"
gene complement(6..197)
/locus_tag="ECO26_p3-2"
/db_xref="GeneID:8470638"
CDS complement(6..197)
/locus_tag="ECO26_p3-2"
/codon_start=1
/transl_table=11
/product="putative RNA I inhibition modulator protein Rom"
/protein_id="YP_003232551.1"
/db_xref="GI:260751830"
/db_xref="GeneID:8470638"
/translation="MTKQEKTALNMARFIRGQTLTLLEKLNELDADEQADICESLHDH
ADELYRSCLARFGDDGENL"
gene 262..585
/locus_tag="ECO26_p3-3"
/db_xref="GeneID:8470639"
CDS 262..585
/locus_tag="ECO26_p3-3"
/codon_start=1
/transl_table=11
/product="putative mobilization protein 2"
/protein_id="YP_003232552.1"
/db_xref="GI:260751831"
/db_xref="GeneID:8470639"
/translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPT
LAPPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQG
TRDDS"
gene 575..2128
/locus_tag="ECO26_p3-4"
/db_xref="GeneID:8470640"
CDS 575..2128
/locus_tag="ECO26_p3-4"
/codon_start=1
/transl_table=11
/product="mobilization protein MbeA"
/protein_id="YP_003232553.1"
/db_xref="GI:260751832"
/db_xref="GeneID:8470640"
/translation="MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELI
DATPFAKKYTSGVLSFAEKELPPGGREKVMASFERVLMPGLEKNQYSILWVEHQDKGR
LELNFVIPNMELQSGKRLQPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRILTLP
DNLPKTKQALAESVTRGIDALYHVGEIKGRQDVIQALTEAGIEVVRVTRSSISIAGPN
GGRNIKLKGAFYEQSFTDGRGVREKAERESRIYRENAEQRVQEARRVCQRGCDLKRDE
NQRRYSPVHSLDREIAGKTPGRGERGDDAAQEGRVKAGREYGHDVTGDSLSPVYSEWR
DALVSWREDTGEPGRNQEAGRDIAETEREDMGRGVCAGREQEIPCPSVREISGGDSLS
GERVGTSEGVTQSDRAGNTFAERLRAAATGLYAAAERMGERLRGIAEDVFAYATGQRD
AERAGHAVESAGAALERADRTLEPVIQRELEIREERLIQEREHVLSLERERQPEIQER
TLDGPSLGW"
gene complement(2405..3535)
/locus_tag="ECO26_p3-5"
/db_xref="GeneID:8470641"
CDS complement(2405..3535)
/locus_tag="ECO26_p3-5"
/note="type II restriction modification system"
/codon_start=1
/transl_table=11
/product="putative DNA modification methylase"
/protein_id="YP_003232554.1"
/db_xref="GI:260751833"
/db_xref="GeneID:8470641"
/translation="MTVKNNYLNRGYLVTSTTQAKKIAKLHLEKLDLADKFSFGLPEV
DDRYHVWRVPLVATGHRIGEIVINSKTSTIDYKKSSKSPFLIKKAMEVVHTPKKVKKE
KKIISKSPLNNMLLQGNCAETLKKLPDESVNLVFTSPPYYNAKPEYSEYHTYDEYLSL
LRSVIKECHRVLSEGRFFVINVSPVLIRRASRNEASKRIAVPFDLHRLFIEEGYEFID
DIHWVKPEGAGWALGRGRRFAADRNPLQYKPVPVTEYILVYRKKTDKLIDWNIRNHHS
KEDVFDSKIGDDYEKTNLWKINPSRNRKHPATFPYGLAERVIKYYSFKNDVILDPFAG
SGTTAKAAIDLGRRFVMCEISKQYIDLIIEGTMLGGDLKIIN"
gene 3612..4679
/locus_tag="ECO26_p3-6"
/db_xref="GeneID:8470642"
CDS 3612..4679
/locus_tag="ECO26_p3-6"
/note="type II restriction modification system"
/codon_start=1
/transl_table=11
/product="putative restriction enzyme"
/protein_id="YP_003232555.1"
/db_xref="GI:260751834"
/db_xref="GeneID:8470642"
/translation="MNFKDKNCFPNELIALAKISKNDVLDKFGTDVFKKVVYDVLTGK
NVREFTEILTRTRLLESNLSFFDFFVDKMKEGITPKQLYLYAKNALSNKSYVKSNQPV
LEWMVMMTNKQTQNVLRDEHGDGFDRLALRTQEEILKIKNGYEDKIGEISIGGQKVSL
EDFCYIILSLGSQTLTIRGSEKSLHGKYFEKLILGSLFTIMGFEYKEKIEEGLNAKCF
TLSTRADDRESDATLVFNGKAIRVDIGFIGRGNTEISLDKVSRFRRMDDIGGVMHNIS
TMVIVDVIGDRSRIVNMAEEIDGKVVAMSDPYWVAKVSSYISSKLNVDDLLEDKPQLK
DIQSFISDALENVDLEKYIKL"
ORIGIN
1 atgtgtcaga ggttttcacc gtcatccccg aaacgtgcga ggcagctgcg gtaaagctca
61 tcggcgtggt cgtgaagcga ttcacagata tctgcctgtt catctgcgtc cagttcgtta
121 agtttctcca gcagcgttaa tgtctggcct ctgatgaaac gggccatgtt aagggcggtt
181 ttttcctgtt tagtcactga tgcctccgtg taagggggat ttctgttcat gggggtaatg
241 ataccgatga aacgcgagag gatgctcacg atacgggtta ctgatgatga acatgcccgg
301 ttactggaac gctgtgaggg taaacaactg gcggtatgga tgcggcgggt ctgcctgggt
361 gagccggttg cccgttccgg gaagctgccg acactggctc cgccgttact gcgtcagctg
421 gccgccatcg ggaataacct gaatcagaca gcgaggaagg tgaacagcgg acagtggtct
481 tccggtgacc gggttcaggt agtggccgca ctgatggcca tcggggatga gctgcgccgg
541 ctgcgtctgg ccgtcaggga acaggggacg cgggatgata gttaaatttc atgccagggg
601 aaaaggtggt ggcagtggtc cggttgatta cctgctggga agggagcgta accgggaagg
661 ggcaacggtg cttcagggta atccggaaga agtccgggaa ctcatcgatg ccacgccatt
721 tgcgaagaaa tacacgtcag gtgttctgtc gttcgcggag aaggagctgc cgccgggagg
781 acgtgaaaaa gtgatggcga gctttgagcg tgtactgatg cccggtctcg aaaaaaatca
841 gtacagcatc ctgtgggtgg agcaccagga caagggacgg cttgagctga attttgtcat
901 tccgaacatg gagctacaga gcggaaaacg cctccagccg tactacgacc gggcagacag
961 gccgagaatt gatgcctggc agacgctggt taatcaccat tacgggctgc atgaccccaa
1021 cgccccggag aaccgccgga tactgactct ccctgataac ctgccgaaaa cgaaacaggc
1081 gcttgcagag agcgtcacgc gcgggataga cgctctttat catgtcgggg agataaaagg
1141 ccgtcaggat gtgattcagg cgctcacgga ggcagggatt gaagtggtca gggtgacgcg
1201 aagcagtatc agcattgcag gcccgaacgg cgggaggaat atcaagctga aaggagcatt
1261 ttatgagcaa tcttttacag acgggcgcgg agttcgagaa aaagctgaaa gagagagccg
1321 aatctacaga gaaaatgctg aacaacgagt tcaggaggct cggcgagtct gtcagcgagg
1381 ctgtgacctc aaacgagacg aaaatcagag acgctatagc cctgttcaca gcctcgacag
1441 agaaatcgct ggaaaaacac cgggaagggg tgaaagaggc gatgatgcag cacaggaagg
1501 acgtgttaaa gctggcaggg aatacgggca tgatgttact ggggatagtc tttctcctgt
1561 ttacagcgag tggcgggacg ctctggtatc ttggagggag gatacaggcg aacctggaag
1621 aaatcaggaa gcaggaagag acattgcaga aactgaacgc gaagacatgg ggcgtggagt
1681 ttgtgcagga cgggaacagg aaattccttg tccttccgta cgggaaatca gcggaggtga
1741 ttccctttca ggggaaagag tgggtacatc tgaaggagtg acacagagtg acagagctgg
1801 aaacacattt gctgaacgcc ttagagcagc tgcaacagga ctatatgcag cggctgagcg
1861 aatgggagag cgccttcgtg gaattgcaga agatgttttc gcttacgcaa cgggacaacg
1921 cgatgctgaa cgagcgggtc atgcagttga gtcagcaggt gcagcacttg agcgagcaga
1981 cagaacgctt gagccagtta tacagcgaga actggagata agagaggaac ggctgataca
2041 ggagcgcgaa catgtgttat ccctggaacg ggagcgtcag ccggaaatac aggaacgcac
2101 gctggatggc ccttcgctgg gatggtgaaa ccatgaaaaa tggcaggtta agtggattaa
2161 gacaggctaa tgtggtctgt accatctggt tgcataggta ttcatgcggt taaaatttat
2221 caggcgcgat tgcggcagtt tttcgggggg tttgttgcca tttttacctg tctgctgctg
2281 tgatcgcgct gaacgcgttt tggcggtgcg tacaattaag ggattatggt aaattcgaca
2341 atgtggctga tgttgacgcg taaataagcc gccttaaggc ggcttttacc acagtaaagt
2401 ttgattaatt tatgattttt aaatcaccac ctagcatggt tccttctatg atcagatcaa
2461 tatactgctt tgatatctca cacatcacaa atcttctgcc taaatcaatt gctgcttttg
2521 ctgttgttcc cgatccagca aaaggatcta aaataacatc atttttgaaa gaatagtatt
2581 ttataactct ttctgccaga ccgtatggaa atgtagcagg atgttttctg ttacgagatg
2641 gatttatttt ccataggttt gtcttttcgt aatcgtcgcc gatttttgag tcaaaaacat
2701 cctctttgct atgatggttt cttatgttcc aatctattaa tttatcagtt ttttttctgt
2761 aaacaagaat gtactcagtt actggtactg gtttatattg caacggattg cggtcagctg
2821 cgaatcgacg gcctctacct aaagcccagc cagctccttc tggtttaacc caatgtatat
2881 catctatgaa ttcatagcct tcttctataa ataacctgtg caagtcaaaa ggaacagcta
2941 ttctttttga tgcttcattc cgtgacgccc ttcttattaa aacgggcgag acattgatga
3001 cgaaaaaacg accttcgctt aaaactctat ggcactcttt tattactgaa cgcaatagag
3061 agaggtattc atcatatgta tgatattcgg aatactctgg tttggcattg taatatggcg
3121 gtgatgtgaa tactaagttc actgattcat caggtaattt tttcaaggtc tccgcgcagt
3181 tgccttgtag taacatgtta tttaatggtg actttgatat gatttttttt tcttttttta
3241 ccttttttgg ggtatggaca acctccattg ctttcttaat aagaaatgga gacttcgaac
3301 ttttcttata atcaatagtt gacgtttttg aatttataac tatttcacca atcctgtggc
3361 ctgtcgctac taatggtaca cgccatacat ggtaccgatc atcgacttca ggtaacccaa
3421 aggaaaattt atcagctaag tctaatttct ctaggtgcaa ctttgctatt tttttcgcct
3481 gagtcgtaga ggttaccaaa taacctctgt ttaagtaatt gtttttaact gtcatttttc
3541 ctaactatcg atctgttacc atacaacctg ctatcttagc atctcatttt tactatgtcc
3601 atggtgagga tatgaatttc aaggataaaa attgtttccc taacgaactc atagcgttgg
3661 cgaaaatttc aaaaaatgat gttttagata agttcggaac ggatgttttt aaaaaggttg
3721 tttatgatgt tttaacaggt aaaaatgttc gcgaattcac tgaaatacta actcgtacta
3781 gattgttaga aagcaatctc tctttttttg acttttttgt ggataaaatg aaagaaggga
3841 taacgccaaa gcagctttat ctctatgcaa aaaatgcatt atcgaacaag tcttatgtta
3901 agtctaatca acctgttctc gagtggatgg ttatgatgac aaataaacag acccaaaatg
3961 ttttaagaga tgagcatggg gatggttttg atagacttgc tttaaggacg caagaagaaa
4021 tacttaaaat aaaaaacggg tatgaagata aaattggaga gatatctatt ggtgggcaaa
4081 aggtgtcttt agaagatttt tgctatatta ttttatctct tggttcgcaa actttaacta
4141 ttaggggatc tgagaaatct cttcatggta aatattttga aaagctaata ctcggttctt
4201 tatttacaat aatgggtttt gaatataaag aaaaaattga agaagggtta aatgctaaat
4261 gttttactct ttcaacaaga gctgatgaca gggagtctga tgctactctt gtttttaatg
4321 ggaaggcgat tagggttgac attggtttta ttggtagggg taacacagaa ataagtttgg
4381 ataaagtatc tagatttaga cgaatggatg atattggcgg agtgatgcat aatataagca
4441 caatggttat tgttgacgtt attggtgata gaagtagaat agttaatatg gctgaagaga
4501 ttgatggtaa agttgttgcg atgagtgatc cgtattgggt tgcaaaggtc tcttcctata
4561 ttagttcgaa actgaatgta gatgatcttt tagaggataa acctcaactt aaagacatac
4621 agtcttttat atctgatgca ttagagaatg tagatctgga aaaatacatt aaattataag
4681 agattgtaat ccttgactgc gtgcttatta aaagcataat ctctacataa agaaaaacca
4741 ccctggcagg tggtttttca aaggttagct aatcctggca gattatctaa ccaggtaatc
4801 tggcttaagc agagcgcaga ccaccaaaac ttgttcttct agtgtagcca gaatcaggct
4861 gatacttcaa gaactctgtt accaacttat aaatctcgct ctgctaaccc ggttaccaat
4921 ggctgctgcc agtggcgttt ttacgtgtct ttccgggttg gactcaagac gatagttacc
4981 ggataaggcg cagcggtcgg gctgaacggg gggttcgtgc acacagccca gcttggagcg
5041 aacgacctac accgagccga gataccaaca gcgtgagcta tgagaaagcg ccacgcttcc
5101 cgaagggaga aaggcggaga ggtatccggt aagcggcagg gtcggaacag gagagcgcac
5161 gagggagctt ccagggggaa acgcctggta tctttatagt cctgtcgggt ttcgccacct
5221 ctgacttgag cgtcgatttt tgtgatgctc gtcagggggg cggagcctat ggaaaaaacg
5281 ccagcggcgc ggcttttttt gccctttgtc tttttgctca catgttcttt ccggccttat
5341 cccctgattc tgtggataac cgtattgccg tttttgagca agcagactcc gctcgccgca
5401 gtcgaacgac cgagcgcagc gagtcagtga gcgaggaagc ggaaaagcgc ctggacgtgc
5461 attttctcct tacgcatctg tgcggcattt cacacccggc atggtgcact tttcatacaa
5521 tgcgccctga tgccgaataa gtaagccagt atacactccg ctatcgctac gtgactgggt
5581 cagggctgcg ccccgacacc cgctaaaacc cgctgacgcg tcctgacggg cttgtcggct
5641 cccggcatcc gctcacagac aagctgtgac cgtttccggg agctgc
//
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