1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
|
.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.6.
.TH REMOVE_SHORT_SEQS "1" "August 2018" "remove_short_seqs 20170919" "User Commands"
.SH NAME
remove_short_seqs \- visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
.SH DESCRIPTION
usage: remove_short_seqs [[\-i input] [\-l length] | [\-h]]
\fB\-i\fR DIRECTORY the input directory of GenBank files with .gbk extensions
\fB\-l\fR INTEGER remove GenBank files that describe sequences shorter than this length
.SS "USAGE:"
.IP
remove_short_seqs \fB\-i\fR DIR \fB\-l\fR INTEGER
.SS "DESCRIPTION:"
.IP
Removes GenBank files that are shorter than the specified length from the
provided directory.
.SS "REQUIRED ARGUMENTS:"
.HP
\fB\-i\fR, \fB\-\-input\fR DIR
.IP
Input directory of GenBank files with .gbk extensions.
.HP
\fB\-l\fR, \fB\-\-length\fR INTEGER
.IP
Remove GenBank files that describe sequences shorter than this length.
.SS "OPTIONAL ARGUMENTS:"
.HP
\fB\-h\fR, \fB\-\-help\fR
.IP
Show this message
.SS "EXAMPLE:"
.IP
remove_short_seqs \fB\-i\fR my_project/comparison_genomes \fB\-l\fR 100000
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
|
