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#! /usr/bin/env python
# taskvine python binding tests
# tests for missing/recursive inputs/outputs.
import argparse
import atexit
import sys
import tempfile
import os
import os.path as path
import shutil
import stat
import time
import ndcctools.taskvine as vine
test_dir = tempfile.mkdtemp(prefix="vine.test", dir=".")
input_name = "input.file"
exec_name = "exec.file"
error = False
def cleanup():
shutil.rmtree(test_dir)
atexit.register(cleanup)
def report_task(task, expected_result, expected_exit_code, expected_outputs=None):
global error
if not task:
error = True
print("\nTask did not complete in expected time.")
else:
print("\nTask '{command}' report:".format(command=task.command))
print("result: {r}".format(r=task.result))
print("exit code: {exit_code}".format(exit_code=task.exit_code))
if task.output:
print("stderr:\n+++\n{stderr}---".format(stderr=task.output.encode("ascii", "replace")))
if task.result != expected_result:
error = True
print("Should have finished with result '{result}', but got '{real}'.".format(result=expected_result, real=task.result))
elif task.exit_code != expected_exit_code:
error = True
print("Should have finished with exit_code {expected_exit_code}, but got {real}.".format(expected_exit_code=str(expected_exit_code), real=str(task.exit_code)))
elif expected_outputs:
for out in expected_outputs:
if not path.isfile(out):
error = True
print("Should have created file {output} but did not.".format(output=out))
else:
print("Completed as expected.")
output_count = 0
def next_output_name():
global output_count
output_count += 1
return "output_file." + str(output_count)
if __name__ == "__main__":
parser = argparse.ArgumentParser("Test for taskvine python bindings.")
parser.add_argument("port_file", help="File to write the port the queue is using.")
parser.add_argument("--ssl_key", default=None, help="SSL key in pem format.")
parser.add_argument("--ssl_cert", default=None, help="SSL certificate in pem format.")
args = parser.parse_args()
wait_time = 30
with open(path.join(test_dir, input_name), "w") as f:
f.write("hello world\n")
shutil.copyfile("/bin/cat", path.join(test_dir, exec_name))
os.chmod(path.join(test_dir, exec_name), stat.S_IRWXU)
q = vine.Manager(port=0, ssl=(args.ssl_key, args.ssl_cert))
q.tune("transient-error-interval", 1)
exec_file = q.declare_file(path.join(test_dir, exec_name), cache=True)
input_file = q.declare_file(path.join(test_dir, input_name), cache=True)
with open(args.port_file, "w") as f:
print("Writing port {port} to file {file}".format(port=q.port, file=args.port_file))
f.write(str(q.port))
# simple task
# define a task, sending stderr to console, and stdout to output
output_name = next_output_name()
t = vine.Task(f"./{exec_name} {input_name} 2>&1 > {output_name}")
t.add_input(exec_file, exec_name)
t.add_input(input_file, input_name)
output_file = q.declare_file(path.join(test_dir, output_name), cache=False)
t.add_output(output_file, output_name)
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0, [path.join(test_dir, output_name)])
# same simple task, but now we send the directory as an input
output_name = next_output_name()
t = vine.Task(f"cd my_dir && ./{exec_name} {input_name} 2>&1 > {output_name}")
in_dir = q.declare_file(test_dir, cache=True)
t.add_input(exec_file, exec_name)
t.add_input(in_dir, "my_dir")
output_file = q.declare_file(path.join(test_dir, output_name), cache=False)
t.add_output(output_file, path.join("my_dir", output_name))
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0, [path.join(test_dir, output_name)])
# same thing, but this time symlink the input directory.
output_name = next_output_name()
t = vine.Task(f"cd my_dir && ./{exec_name} {input_name} 2>&1 > {output_name}")
in_dir = q.declare_file(test_dir, cache=True)
t.add_input(exec_file, exec_name)
t.add_input(in_dir, "my_dir", mount_symlink=True)
output_file = q.declare_file(path.join(test_dir, output_name), cache=False)
t.add_output(output_file, path.join("my_dir", output_name))
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0, [path.join(test_dir, output_name)])
# we bring back the outputs from a directory:
output_name = next_output_name()
t = vine.Task(f"mkdir outs && ./{exec_name} {input_name} 2>&1 > outs/{output_name}")
t.add_input(exec_file, exec_name)
t.add_input(input_file, input_name)
outs = q.declare_file(path.join(test_dir, "outs"), cache=False)
t.add_output(outs, "outs")
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0, [path.join(test_dir, "outs", output_name)])
# Execute a task that only communicates through buffers:
inbuf = q.declare_buffer(bytes("This is only a test!", "utf-8"))
outbuf1 = q.declare_buffer()
outbuf2 = q.declare_buffer()
t = vine.Task("cp input.txt output1.txt && cp input.txt output2.txt")
t.add_input(inbuf, "input.txt")
t.add_output(outbuf1, "output1.txt")
t.add_output(outbuf2, "output2.txt")
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0)
if outbuf1.contents() != inbuf.contents() or outbuf2.contents() != inbuf.contents():
print("incorrect output:\nout1: {}\nout2: {}\n".format(outbuf1.contents(), outbuf2.contents()))
sys.exit(1)
else:
print("buffer outputs match: {}".format(inbuf.contents()))
# should fail because the 'executable' cannot be executed:
t = vine.Task(f"./{input_name}".format(input=input_name))
t.add_input(input_file, input_name)
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 126)
# should fail because the 'executable' cannot be found:
t = vine.Task("./notacommand")
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 127)
# should fail because an input file does not exists:
t = vine.Task("./notacommand")
t.add_input(q.declare_file("notacommand"), "notacommand")
q.submit(t)
t = q.wait(wait_time)
report_task(t, "input missing", -1)
# should fail because an output file was not created:
output_name = next_output_name()
t = vine.Task(f"./{exec_name} {input_name} 2>&1")
t.add_input(exec_file, exec_name)
t.add_input(input_file, input_name)
output_file = q.declare_file(path.join(test_dir, output_name), cache=False)
t.add_output(output_file, output_name)
q.submit(t)
t = q.wait(wait_time)
report_task(t, "output missing", 0)
# should succeed in the alloted time
t = vine.Task("/bin/sleep 1")
t.set_time_max(10)
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0)
# should fail in the alloted time
t = vine.Task("/bin/sleep 100")
t.set_time_max(1)
q.submit(t)
t = q.wait(wait_time)
report_task(t, "max wall time", 9)
# should run in the alloted absolute time
t = vine.Task("/bin/sleep 1")
t.set_time_end((time.time() + 5) * 1e6)
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0)
# should fail in the alloted absolute time
t = vine.Task("/bin/sleep 10")
t.set_time_end((time.time() + 2) * 1e6)
q.submit(t)
t = q.wait(30)
report_task(t, "max end time", 9)
# Pull down data from a url and unpack it via a minitask.
# Note that we use a local file url of a small tarball to test the mechanism without placing a load on the network.
f = q.declare_untar(q.declare_url("file://{}/dummy.tar.gz".format(os.getcwd())))
t = vine.Task("ls -lR cctools | wc -l")
t.add_input(f, "cctools")
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0)
# Create an explicit minitask description to run curl
minitask = vine.Task("curl https://www.nd.edu -o output")
infile = q.declare_minitask(minitask,"output")
infile.set_mode(0o600)
# Now generate an input file from a shell command:
t = vine.Task("wc -l infile")
t.add_input(infile, "infile")
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0)
# second time should have it cached (though we can't tell from here)
t = vine.Task("wc -l infile")
t.add_input(infile, "infile")
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0)
# Now generate an input file from a shell command:
t = vine.Task("wc -l infile")
url = q.declare_url("https://www.nd.edu", cache=True)
t.add_input(url, "infile")
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0)
# second time should have it cached (though we can't tell from here)
t = vine.Task("wc -l infile")
t.add_input(url, "infile")
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0)
# generate an invalid remote input file, should get an input missing error.
t = vine.Task("wc -l infile_for_forsaken")
t.set_max_forsaken(1)
url = q.declare_url("https://pretty-sure-this-is-not-a-valid-url.com")
t.add_input(url, "infile_for_forsaken")
q.submit(t)
t = q.wait(wait_time)
report_task(t, "forsaken", -1)
# create a temporary output file, and then fetch its contents manually.
t = vine.Task("echo howdy > output")
temp = q.declare_temp()
t.add_output(temp,"output")
q.submit(t)
t = q.wait(wait_time)
report_task(t, "success", 0)
got_file = False
for i in range(3):
data = q.fetch_file(temp)
if data == "howdy\n":
print("correct data returned from temp file")
got_file = True
break
else:
print("INCORRECT data returned from temp file: {}".format(data))
print("Trying again...")
time.sleep(1)
if not got_file:
error = True
if error:
sys.exit(1)
sys.exit(0)
# vim: set sts=4 sw=4 ts=4 expandtab ft=python:
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