1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634
|
# Copyright (C) 2022 The University of Notre Dame This software is distributed
# under the GNU General Public License.
# See the file COPYING for details.
#
##
# @namespace ndcctools.resource_monitor
#
# Resource monitoring tool for complex applications - Python interface.
#
# The resource_monitor provides an unprivileged way for systems
# to monitor the consumption of key resources (cores, memory, disk)
# of applications ranging from simple Python functions up to complex
# multi-process trees. It provides measurement, logging, enforcement,
# and triggers upon various conditions.
# The objects and methods provided by this package correspond to the native
# C API in @ref category.h, rmonitor_poll.h, and rmsummary.h
#
# The SWIG-based Python bindings provide a higher-level interface that
# revolves around the following function/decorator and objects:
#
# - @ref resource_monitor::monitored
# - @ref resource_monitor::ResourceExhaustion
# - @ref resource_monitor::Category
import fcntl
import functools
import multiprocessing
import os
import signal
import struct
import tempfile
import threading
from .cresource_monitor import ( # noqa: F401
CATEGORY_ALLOCATION_MODE_FIXED,
CATEGORY_ALLOCATION_MODE_MAX_THROUGHPUT,
CATEGORY_ALLOCATION_MODE_MIN_WASTE,
D_RMON,
MINIMONITOR_ADD_PID,
MINIMONITOR_MEASURE,
MINIMONITOR_REMOVE_PID,
category_accumulate_summary,
category_create,
category_specify_allocation_mode,
category_tune_bucket_size,
category_update_first_allocation,
cctools_debug,
cctools_debug_config,
cctools_debug_flags_set,
rmonitor_measure_process,
rmonitor_minimonitor,
rmsummary,
rmsummary_check_limits,
rmsummary_create,
rmsummary_delete,
rmsummary_copy,
rmsummary_get_snapshot,
rmsummary_merge_max,
rmsummaryArray_getitem,
delete_rmsummaryArray,
)
def set_debug_flag(*flags):
for flag in flags:
cctools_debug_flags_set(flag)
cctools_debug_config('resource_monitor')
##
# Create a monitored version of a function.
# It can be used as a decorator, or called by itself.
#
# @param limits Dictionary of resource limits to set. Available limits are:
# - wall_time: time spent during execution (seconds)
# - cpu_time: user + system time of the execution (seconds)
# - cores: peak number of cores used
# - cores_avg: number of cores computed as cpu_time/wall_time
# - max_concurrent_processes: the maximum number of processes running concurrently
# - total_processes: count of all of the processes created
# - virtual_memory: maximum virtual memory across all processes (megabytes)
# - memory: maximum resident size across all processes (megabytes)
# - swap_memory: maximum swap usage across all processes (megabytes)
# - bytes_read: number of bytes read from disk
# - bytes_written: number of bytes written to disk
# - bytes_received: number of bytes read from the network
# - bytes_sent: number of bytes written to the network
# - bandwidth: maximum network bits/s (average over one minute)
# - total_files: total maximum number of files and directories of all the working directories in the tree
# - disk: size of all working directories in the tree (megabytes)
#
# @param callback Function to call every time a measurement is done. The arguments given to the function are
# - id: Unique identifier for the function and its arguments.
# - name: Name of the original function.
# - step: Measurement step. It is -1 for the last measurement taken.
# - resources: Current resources measured.
# @param interval Maximum time in seconds between measurements.
# @param return_resources Whether to modify the return value of the function to a tuple of the original result and a dictionary with the final measurements.
# @code
# # Decorating a function:
# @monitored()
# def my_sum_a(lst):
# return sum(lst)
#
# @monitored(return_resources = False, callback = lambda id, name, step, res: print('memory used', res['memory']))
# def my_sum_b(lst):
# return sum(lst)
#
# >>> (result_a, resources) = my_sum_a([1,2,3])
# >>> print(result, resources['memory'])
# 6, 66
#
# >>> result_b = my_sum_b([1,2,3])
# memory used: 66
#
# >>> assert(result_a == result_b)
#
#
# # Wrapping the already defined function 'sum', adding limits:
# my_sum_monitored = monitored(limits = {'memory': 1024})(sum)
# try:
# # original_result = sum(...)
# (original_result, resources_used) = my_sum_monitored(...)
# except ResourceExhaustion as e:
# print(e)
# ...
#
# # Defining a function with a callback and a decorator.
# # In this example, we record the time series of resources used:
# import multiprocessing
# results_series = multiprocessing.Queue()
#
# def my_callback(id, name, step, resources):
# results_series.put((step, resources))
#
# @monitored(callback = my_callback, return_resources = False):
# def my_function(...):
# ...
#
# result = my_function(...)
#
# # print the time series
# while not results_series.empty():
# try:
# step, resources = results_series.get(False)
# print(step, resources)
# except multiprocessing.Empty:
# pass
# @endcode
def monitored(limits=None, callback=None, interval=1, return_resources=True):
def monitored_inner(function):
return functools.partial(__monitor_function, limits, callback, interval, return_resources, function)
return monitored_inner
##
# Exception raised when a function goes over the resources limits
class ResourceExhaustion(Exception):
##
# @param self Reference to the current object.
# @param resources Dictionary of the resources measured at the time of the exhaustion.
# @param function Function that caused the exhaustion.
# @param fn_args List of positional arguments to function that caused the exhaustion.
# @param fn_kwargs Dictionary of keyword arguments to function that caused the exhaustion.
def __init__(self, resources, function, fn_args=None, fn_kwargs=None):
limits = resources['limits_exceeded']
ls = ["{limit}: {value}".format(limit=k, value=limits[k]) for k in rmsummary.list_resources() if limits[k] > -1]
message = 'Limits broken: {limits}'.format(limits=','.join(ls))
super(ResourceExhaustion, self).__init__(resources, function, fn_args, fn_kwargs)
self.resources = resources
self.function = function
self.fn_args = fn_args
self.fn_kwargs = fn_kwargs
self.message = message
def __str__(self):
return self.message
class ResourceInternalError(Exception):
pass
def __measure_update_to_peak(pid, old_summary=None):
new_summary = rmonitor_measure_process(pid, 1)
if old_summary is None:
return new_summary
rmsummary_merge_max(old_summary, new_summary)
return old_summary
def __child_handler(child_finished, signum, frame):
child_finished.set()
def _wrap_function(results, fun, args, kwargs):
def fun_wrapper():
try:
import os
import time
pid = os.getpid()
rm = __measure_update_to_peak(pid)
start = time.time()
result = fun(*args, **kwargs)
__measure_update_to_peak(pid, rm)
setattr(rm, 'wall_time', int((time.time() - start) * 1e6))
results.put((result, rm))
except Exception as e:
results.put((e, None))
cctools_debug(D_RMON, "function wrapper created")
return fun_wrapper
def __read_pids_file(pids_file):
fcntl.flock(pids_file, fcntl.LOCK_EX)
line = bytearray(pids_file.read())
fcntl.flock(pids_file, fcntl.LOCK_UN)
n = len(line) / 4
if n > 0:
ns = struct.unpack('!' + 'i' * int(n), line)
for pid in ns:
if pid > 0:
rmonitor_minimonitor(MINIMONITOR_ADD_PID, pid)
else:
rmonitor_minimonitor(MINIMONITOR_REMOVE_PID, -pid)
_watchman_counter = 0
def _watchman(results_queue, limits, callback, interval, function, args, kwargs):
try:
# child_finished is set when the process running function exits
child_finished = threading.Event()
signal.signal(signal.SIGCHLD, functools.partial(__child_handler, child_finished))
# result of function is eventually push into local_results
local_results = multiprocessing.Queue()
# process that runs the original function
fun_proc = multiprocessing.Process(target=_wrap_function(local_results, function, args, kwargs))
# unique name for this function invocation
# fun_id = str(hash(json.dumps({'args': args, 'kwargs': kwargs}, sort_keys=True)))
global _watchman_counter
_watchman_counter += 1
fun_id = str(hash(_watchman_counter))
# convert limits to the structure the minimonitor accepts
if limits:
limits = rmsummary.from_dict(limits)
# pids of processes created by fun_proc (if any) are written to pids_file
pids_file = None
try:
# try python3 version first, which gets the 'buffering' keyword argument
pids_file = tempfile.NamedTemporaryFile(mode='rb+', prefix='p_mon-', buffering=0)
except TypeError:
# on error try python2, which gets the 'bufsize' keyword argument
pids_file = tempfile.NamedTemporaryFile(mode='rb+', prefix='p_mon-', bufsize=0)
os.environ['CCTOOLS_RESOURCE_MONITOR_PIDS_FILE'] = pids_file.name
cctools_debug(D_RMON, "starting function process")
fun_proc.start()
rmonitor_minimonitor(MINIMONITOR_ADD_PID, fun_proc.pid)
# resources_now keeps instantaneous measurements, resources_max keeps the maximum seen
resources_now = rmonitor_minimonitor(MINIMONITOR_MEASURE, 0)
resources_max = rmsummary_copy(resources_now, 0)
try:
step = 0
while not child_finished.is_set():
step += 1
# register/deregister new processes
__read_pids_file(pids_file)
resources_now = rmonitor_minimonitor(MINIMONITOR_MEASURE, 0)
rmsummary_merge_max(resources_max, resources_now)
rmsummary_check_limits(resources_max, limits)
if resources_max.limits_exceeded is not None:
child_finished.set()
else:
if callback:
callback(fun_id, function.__name__, step, _resources_to_dict(resources_now))
child_finished.wait(timeout=interval)
except Exception as e:
fun_proc.terminate()
fun_proc.join()
raise e
if resources_max.limits_exceeded is not None:
fun_proc.terminate()
fun_proc.join()
results_queue.put({'result': None, 'resources': resources_max, 'resource_exhaustion': True})
else:
fun_proc.join()
try:
(fun_result, resources_measured_end) = local_results.get(True, 5)
except Exception as e:
e = ResourceInternalError("No result generated: %s", e)
cctools_debug(D_RMON, "{}".format(e))
raise e
if resources_measured_end is None:
raise fun_result
rmsummary_merge_max(resources_max, resources_measured_end)
results_queue.put({'result': fun_result, 'resources': resources_max, 'resource_exhaustion': False})
if callback:
callback(fun_id, function.__name__, -1, _resources_to_dict(resources_max))
except Exception as e:
cctools_debug(D_RMON, "error executing function process: {err}".format(err=e))
results_queue.put({'result': e, 'resources': None, 'resource_exhaustion': False})
def _resources_to_dict(resources):
d = resources.to_dict()
try:
if d['wall_time'] > 0:
d['cores_avg'] = float(d['cpu_time']) / float(d['wall_time'])
except KeyError:
d['cores_avg'] = -1
return d
def __monitor_function(limits, callback, interval, return_resources, function, *args, **kwargs):
result_queue = multiprocessing.Queue()
watchman_proc = multiprocessing.Process(target=_watchman, args=(result_queue, limits, callback, interval, function, args, kwargs))
watchman_proc.start()
watchman_proc.join()
results = result_queue.get(True, 5)
if not results['resources']:
raise results['result']
results['resources'] = _resources_to_dict(results['resources'])
# hack: add value of gpus limits as the value measured:
try:
if limits:
results['resources']['gpus'] = limits['gpus']
except KeyError:
pass
if results['resource_exhaustion']:
raise ResourceExhaustion(results['resources'], function, args, kwargs)
if return_resources:
return (results['result'], results['resources'])
else:
return results['result']
##
# Class to encapsule all the categories in a workflow.
#
# @code
# cs = Categories()
# cs.accumulate_summary( { 'category': 'some_category', 'wall_time': 60, 'cores': 1, ... } )
# print(cs.first_allocation(mode = 'throughput', category = 'some_category'))
# @endcode
#
class Categories:
##
# Create an empty set of categories.
# @param self Reference to the current object.
# @param all_categories_name Name of the general category that holds all of the summaries.
def __init__(self, all_categories_name='(all)'):
self.categories = {}
self.all_categories_name = all_categories_name
category_tune_bucket_size('category-steady-n-tasks', -1)
##
# Returns a lists of the category categories. List sorted lexicographicaly,
# with the exception of self.all_categories_name, which it is always
# the last entry.
# @param self Reference to the current object.
def category_names(self):
categories = list(self.categories.keys())
categories.sort()
categories.remove(self.all_categories_name)
categories.append(self.all_categories_name)
return categories
##
# Compute and return the first allocations for the given category.
# Note: wall_time needs to be defined in the resource summaries to be
# considered in this optimization.
#
# @param self Reference to the current object.
# @param mode Optimization mode. One of 'throughput', 'waste', or 'fixed'.
# @param category Name of the category
#
# @code
# cs = Categories()
# fa = cs.first_allocation(mode = 'throughput, category = 'some_category')
# print(fa['cores'])
# print(fa['memory'])
# print(fa['disk'])
# @endcode
def first_allocation(self, mode, category):
c = self._category(category)
return c.first_allocation(mode)
##
# Return the maximum resource values so far seen for the given category.
#
# @param self Reference to the current object.
# @param category Name of the category
#
# @code
# cs = Categories()
# fa = cs.maximum_seen('some_category')
# print(fa['cores'])
# print(fa['memory'])
# print(fa['disk'])
# @endcode
def maximum_seen(self, category):
c = self._category(category)
return c.maximum_seen()
##
# Add the summary (a dictionary) to the respective category.
# At least both the 'category' and 'wall_time' keys should be defined.
#
# @code
# cs = Categories()
# cs.accumulate_summary( { 'category': 'some_category', 'wall_time': 50, 'cores': 1, ... } )
# @endcode
#
def accumulate_summary(self, summary):
category = summary['category']
if category == self.all_categories_name:
raise ValueError("category '" + self.all_categories_name + "' used for individual category.")
c = self._category(category)
c.accumulate_summary(summary)
c = self._category(self.all_categories_name)
c.accumulate_summary(summary)
##
# Return the waste (unit x time) that would be produced if the accumulated
# summaries were run under the given allocation.
#
# @param self Reference to the current object.
# @param category Name of the category
# @param field Name of the resource (e.g., cores, memory, or disk)
# @param allocation Value of allocation to test.
#
def waste(self, category, field, allocation):
c = self._category(category)
return c.waste(field, allocation)
##
# Return the percentage of wasted resources that would be produced if the accumulated
# summaries were run under the given allocation.
#
# @param self Reference to the current object.
# @param category Name of the category
# @param field Name of the resource (e.g., cores, memory, or disk)
# @param allocation Value of allocation to test.
#
def wastepercentage(self, category, field, allocation):
c = self._category(category)
return c.wastepercentage(field, allocation)
##
# Return the throughput that would be obtained if the accumulated
# summaries were run under the given allocation.
#
# @param self Reference to the current object.
# @param category Name of the category
# @param field Name of the resource (e.g., cores, memory, or disk)
# @param allocation Value of allocation to test.
#
def throughput(self, category, field, allocation):
c = self._category(category)
return c.throughput(field, allocation)
##
# Return the number of tasks that would be retried if the accumulated
# summaries were run under the given allocation.
#
# @param self Reference to the current object.
# @param category Name of the category
# @param field Name of the resource (e.g., cores, memory, or disk)
# @param allocation Value of allocation to test.
#
def retries(self, category, field, allocation):
c = self._category(category)
return c.retries(field, allocation)
##
# Return the number of summaries in a particular category.
#
# @param self Reference to the current object.
# @param category Name of the category
#
def count(self, category):
c = self._category(category)
return c.count()
def _category(self, category):
try:
return self.categories[category]
except KeyError:
cat = Category(category)
self.categories[category] = cat
return cat
#
# Class to represent a single category.
#
# Internal class.
class Category:
def __init__(self, category):
self.category = category
self._cat = category_create(category)
self.summaries = []
def allocation_mode(self, mode):
if mode == 'fixed':
category_specify_allocation_mode(self._cat, CATEGORY_ALLOCATION_MODE_FIXED)
elif mode == 'waste':
category_specify_allocation_mode(self._cat, CATEGORY_ALLOCATION_MODE_MIN_WASTE)
elif mode == 'throughput':
category_specify_allocation_mode(self._cat, CATEGORY_ALLOCATION_MODE_MAX_THROUGHPUT)
else:
raise ValueError('No such mode')
def accumulate_summary(self, summary):
r = rmsummary.from_dict(summary)
self.summaries.append(dict(summary))
category_accumulate_summary(self._cat, r, None)
def retries(self, field, allocation):
retries = 0
for r in self.summaries:
if allocation < r[field]:
retries += 1
return retries
def count(self):
return len(self.summaries)
def usage(self, field):
usage = 0
for r in self.summaries:
resource = r[field]
wall_time = r['wall_time']
usage += wall_time * resource
return usage
def waste(self, field, allocation):
maximum = self.maximum_seen()[field]
waste = 0
for r in self.summaries:
resource = r[field]
wall_time = r['wall_time']
if resource > allocation:
waste += wall_time * (allocation + maximum - resource)
else:
waste += wall_time * (allocation - resource)
return waste
def wastepercentage(self, field, allocation):
waste = self.waste(field, allocation)
usage = self.usage(field)
return (100.0 * waste) / (waste + usage)
def throughput(self, field, allocation):
maximum = self.maximum_seen()[field]
maximum = float(maximum)
tasks = 0
total_time = 0
for r in self.summaries:
resource = r[field]
wall_time = r['wall_time']
if resource > allocation:
tasks += 1
total_time += 2 * wall_time
else:
tasks += maximum / allocation
total_time += wall_time
return tasks / total_time
def first_allocation(self, mode):
self.allocation_mode(mode)
if mode == 'fixed':
return self.maximum_seen()
category_update_first_allocation(self._cat, None)
return self._cat.first_allocation.to_dict()
def maximum_seen(self):
return self._cat.max_resources_seen.to_dict()
def rmsummary_snapshots(self):
if self.snapshots_count < 1:
return None
snapshots = []
for i in range(0, self.snapshots_count):
snapshot = rmsummary_get_snapshot(self, i)
snapshots.append(snapshot)
return snapshots
rmsummary.snapshots = property(rmsummary_snapshots)
|