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<html>
<head>
<title>Cooperative Computing Tools Documentation</title>
</head>
<body>
<h1>Cooperative Computing Tools Documentation</h1>
<table cellspacing=10>
<tr>
<td colspan=2>
<a href=install.html><b>CCTools Installation Instructions</b></a>
<tr>
<td colspan=2>
<a href=api/html/index.html><b>CCTools API Documentation</b></a>
<tr valign=top>
<td>
<a href=makeflow.html><b>Makeflow User's Manual</b></a>
<font size=-1>
<dir>
<li> <a href=man/makeflow.html>makeflow</a>
<li> <a href=man/makeflow_monitor.html>makeflow_monitor</a>
<li> <a href=man/starch.html>starch</a>
</dir>
</font>
Sample Applications
<font size=-1>
<dir>
<li> <a href=man/replica_exchange_protomol.html>replica_exchange_protomol</a>
</dir>
</font>
<td>
<a href=workqueue.html><b>Work Queue User's Manual</b></a>
<font size=-1>
<dir>
<li> <a href=man/work_queue_worker.html>work_queue_worker</a>
<li> <a href=man/work_queue_status.html>work_queue_status</a>
<li> <a href=man/work_queue_pool.html>work_queue_pool</a>
<li> <a href=man/condor_submit_workers.html>condor_submit_workers</a>
<li> <a href=man/sge_submit_workers.html>sge_submit_workers</a>
<li> <a href=man/ec2_submit_workers.html>ec2_submit_workers</a>
<li> <a href=man/ec2_remove_workers.html>ec2_remove_workers</a>
</dir>
</font>
<td>
<a href=allpairs.html><b>All Pairs User's Manual</b></a>
<font size=-1>
<dir>
<li> <a href=man/allpairs_master.html>allpairs_master</a>
<li> <a href=man/allpairs_multicore.html>allpairs_multicore</a>
</dir>
</font>
<a href=wavefront.html><b>Wavefront User's Manual</b></a>
<font size=-1>
<dir>
<li> <a href=man/wavefront_master.html>wavefront_master</a>
</dir>
</font>
<tr valign=top>
<td>
<a href=parrot.html><b>Parrot User's Manual</b></a>
<font size=-1>
<dir>
<li> <a href=man/parrot_run.html>parrot_run</a>
<li> <a href=man/parrot_run_hdfs.html>parrot_run_hdfs</a>
<li> <a href=man/parrot_cp.html>parrot_cp</a>
<li> <a href=man/parrot_md5.html>parrot_md5</a>
<li> <a href=man/parrot_getacl.html>parrot_getacl</a>
<li> <a href=man/parrot_setacl.html>parrot_setacl</a>
<li> <a href=man/parrot_mkalloc.html>parrot_mkalloc</a>
<li> <a href=man/parrot_lsalloc.html>parrot_lsalloc</a>
<li> <a href=man/parrot_locate.html>parrot_locate</a>
<li> <a href=man/parrot_timeout.html>parrot_timeout</a>
<li> <a href=man/parrot_whoami.html>parrot_whoami</a>
</dir>
</font>
<td>
<a href=chirp.html><b>Chirp User's Manual</b></a>
<font size=-1>
<dir>
<li> <a href=man/chirp.html>chirp</a>
<li> <a href=man/chirp_status.html>chirp_status</a>
<li> <a href=man/chirp_fuse.html>chirp_fuse</a>
<li> <a href=man/chirp_get.html>chirp_get</a>
<li> <a href=man/chirp_put.html>chirp_put</a>
<li> <a href=man/chirp_stream_files.html>chirp_stream_files</a>
<li> <a href=man/chirp_distribute.html>chirp_distribute</a>
<li> <a href=man/chirp_benchmark.html>chirp_benchmark</a>
<li> <a href=man/chirp_server.html>chirp_server</a>
<li> <a href=man/chirp_server_hdfs.html>chirp_server_hdfs</a>
<li> <a href=man/catalog_server.html>catalog_server</a>
<li> <a href=chirp_protocol.html>The Chirp Protocol</a>
</dir>
</font>
<td>
<a href=sand.html><b>SAND User's Manual</b></a>
<font size=-1>
<dir>
<li> <a href=man/sand_filter_master.html>sand_filter_master</a>
<li> <a href=man/sand_filter_kernel.html>sand_filter_kernel</a>
<li> <a href=man/sand_align_master.html>sand_align_master</a>
<li> <a href=man/sand_align_kernel.html>sand_align_kernel</a>
<li> <a href=man/sand_compress_reads.html>sand_compress_reads</a>
<li> <a href=man/sand_uncompress_reads.html>sand_uncompress_reads</a>
</dir>
</font>
</table>
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