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#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#include <errno.h>
#include <inttypes.h>
#include <limits.h>
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <unistd.h>
#include "cdi.h"
#include "cdi_uuid.h"
#include "dmemory.h"
#include "cksum.h"
#include "simple_model_helper.h"
static int
parse_intarg(const char msg[])
{
char *end;
long temp = strtol(optarg, &end, 0);
if ((errno == ERANGE && (temp == LONG_MAX || temp == LONG_MIN)) || (errno != 0 && temp == 0))
{
perror(msg);
exit(EXIT_FAILURE);
}
if (temp > INT_MAX || temp < INT_MIN)
{
fprintf(stderr, "range error: %ld\n", temp);
exit(EXIT_FAILURE);
}
return (int) temp;
}
/* If we're not using GNU C, elide __attribute__ */
#if !defined __GNUC__ && !defined __attribute__
#define __attribute__(x) /*NOTHING*/
#endif
static inline void
check_positive(int v, const char *msg)
{
if (v < 1)
{
fprintf(stderr, "error: number of %s must be positive!\n", msg);
exit(EXIT_FAILURE);
}
}
#ifdef TEST_CHUNK_WRITE
static void
get_chunk(double *chunkBuf, double *var, int varShape[3], int chunk[3][2])
{
size_t ofs = 0;
size_t start_k = (size_t) chunk[2][0], start_j = (size_t) chunk[1][0], start_i = (size_t) chunk[0][0];
size_t size_k = (size_t) chunk[2][1] - (size_t) chunk[2][0] + 1, size_j = (size_t) chunk[1][1] - (size_t) chunk[1][0] + 1,
size_i = (size_t) chunk[0][1] - (size_t) chunk[0][0] + 1;
size_t stride_k = (size_t) varShape[0] * (size_t) varShape[1], stride_j = (size_t) varShape[0];
for (size_t k = 0; k < size_k; ++k)
for (size_t j = 0; j < size_j; ++j)
for (size_t i = 0; i < size_i; ++i)
chunkBuf[ofs++] = var[(k + start_k) * stride_k + (j + start_j) * stride_j + (i + start_i)];
}
#endif
#ifndef TEST_CHUNK_WRITE
static const struct
{
char suffix[5];
int type, defaultDT, defaultGrid;
} suffix2type[] = {
{ "nc", CDI_FILETYPE_NC, CDI_DATATYPE_FLT64, GRID_LONLAT },
{ "grb", CDI_FILETYPE_GRB, CDI_DATATYPE_PACK24, GRID_LONLAT },
{ "grb2", CDI_FILETYPE_GRB2, CDI_DATATYPE_PACK24, GRID_LONLAT },
{ "nc2", CDI_FILETYPE_NC2, CDI_DATATYPE_FLT64, GRID_LONLAT },
{ "nc4", CDI_FILETYPE_NC4, CDI_DATATYPE_FLT64, GRID_LONLAT },
{
"ext",
CDI_FILETYPE_EXT,
CDI_DATATYPE_FLT64,
GRID_GENERIC,
},
{
"srv",
CDI_FILETYPE_SRV,
CDI_DATATYPE_FLT64,
GRID_GENERIC,
},
{ "ieg", CDI_FILETYPE_IEG, CDI_DATATYPE_FLT64, GRID_LONLAT },
};
#endif
enum
{
nvars = 2,
};
static const int varCodes[nvars] = { 42, 55 };
int
main(int argc, char *argv[])
{
int gridID, zaxisID[nvars], taxisID;
int vlistID, varID[nvars], streamID;
int nlon = 12, //!< Number of longitudes
nlat = 6, //!< Number of latitudes
nlev = 5, //!< Number of levels
nts = 3; //!< Number of time steps
enum
{
nmiss = 0
};
double *restrict var[nvars], mscale, mrscale;
size_t varSize[nvars];
const char *varName[nvars] = { "varname1", "varname2" };
#ifndef TEST_CHUNK_WRITE
const char *suffix = "grb", *prefix = "example";
int filetype = CDI_FILETYPE_GRB, datatype = CDI_DATATYPE_PACK24;
#else
const char *suffix = "nc", *prefix = "example";
int filetype = CDI_FILETYPE_NC, datatype = CDI_DATATYPE_FLT64;
#endif
{
int opt;
while ((opt = getopt(argc, argv,
#ifndef TEST_CHUNK_WRITE
"f:"
#endif
"b:m:n:o:t:"))
!= -1)
switch (opt)
{
#ifndef TEST_CHUNK_WRITE
case 'f':
{
int found = 0;
for (size_t i = 0; i < sizeof(suffix2type) / sizeof(suffix2type[0]); ++i)
if (!strcmp(optarg, suffix2type[i].suffix))
{
found = 1;
filetype = suffix2type[i].type;
suffix = suffix2type[i].suffix;
datatype = suffix2type[i].defaultDT;
break;
}
if (!found)
{
fprintf(stderr, "Unsupported format requested: %s\n", optarg);
exit(EXIT_FAILURE);
}
}
break;
#endif
case 'b': prefix = optarg; break;
case 'm': nlon = parse_intarg("error parsing number of longitudes"); check_positive(nlon, "longitudes");
#ifdef TEST_CHUNK_WRITE
if (nlon < 2)
{
fputs("number of longitudes must be larger 1 for "
"chunk write test\n",
stderr);
exit(EXIT_FAILURE);
}
#endif
break;
case 'n': check_positive(nlat = parse_intarg("error parsing number of latitudes"), "latitudes"); break;
case 'o': check_positive(nlev = parse_intarg("error parsing number of levels"), "levels"); break;
case 't': check_positive(nts = parse_intarg("error parsing number of timesteps"), "timesteps"); break;
default: /* '?' */ fprintf(stderr, "Usage: %s [-m nlon] [-n nlat] [-o nlev] [-t nts]\n", argv[0]); exit(EXIT_FAILURE);
}
}
varSize[0] = (size_t) nlon * (size_t) nlat;
varSize[1] = (size_t) nlon * (size_t) nlat * (size_t) nlev;
// Create a regular lon/lat grid
gridID = createGlobalLatLonGrid(nlon, nlat);
// Create a surface level Z-axis
zaxisID[0] = zaxisCreate(ZAXIS_SURFACE, 1);
// Create a pressure level Z-axis
zaxisID[1] = zaxisCreate(ZAXIS_PRESSURE, nlev);
{
double *levs = (double *) Malloc((size_t) nlev * sizeof(levs[0]));
for (size_t i = 0; i < (size_t) nlev; ++i) levs[i] = 101300 - floor(3940.3 * expm1(2.3579 * (double) i / (nlev - 1)));
zaxisDefLevels(zaxisID[1], levs);
free(levs);
}
/* add uuids to zaxis and grid */
{
unsigned char uuid[CDI_UUID_SIZE];
static char gridUUIDTxt[] = "107d7a5b-348c-4d1a-90a9-d745914f2fb6";
cdiStr2UUID(gridUUIDTxt, uuid);
gridDefUUID(gridID, uuid);
static char zaxisUUIDTxt[2][37] = { { "d157f399-5496-4097-a3d8-437a6dda6311" }, { "6f784a65-bce8-48c9-afa4-4c40130709c7" } };
for (int i = 0; i < 2; ++i)
{
cdiStr2UUID(zaxisUUIDTxt[i], uuid);
cdiDefKeyBytes(zaxisID[i], CDI_GLOBAL, CDI_KEY_UUID, uuid, CDI_UUID_SIZE);
}
}
// Create a Time axis
taxisID = taxisCreate(TAXIS_ABSOLUTE);
// Create a variable list
vlistID = vlistCreate();
for (size_t i = 0; i < nvars; ++i)
{
// Define the variables
varID[i] = vlistDefVar(vlistID, gridID, zaxisID[i], TIME_VARIABLE);
// Define the variable names,
vlistDefVarName(vlistID, varID[i], varName[i]);
// the codes
vlistDefVarCode(vlistID, varID[i], varCodes[i]);
// and set the data type
vlistDefVarDatatype(vlistID, varID[i], datatype);
// create memory for variables
var[i] = (double *) Malloc(varSize[i] * sizeof(var[i][0]));
}
var_scale(datatype, &mscale, &mrscale);
// Assign the Time axis to the variable list
vlistDefTaxis(vlistID, taxisID);
// Create a dataset
streamID = composeStream(NULL, prefix, -1, suffix, filetype);
// Assign the variable list to the dataset
streamDefVlist(streamID, vlistID);
{
uint32_t checksum_state[nvars] = { 0, 0 };
// Loop over the number of time steps
for (size_t tsID = 0; tsID < (size_t) nts; tsID++)
{
int vdatetime[2] = { 120000, 19850101 + (int) tsID };
// Set the verification date to 1985-01-01 + tsID
taxisDefVdate(taxisID, vdatetime[1]);
// Set the verification time to 12:00:00
taxisDefVtime(taxisID, vdatetime[0]);
// Define the time step
streamDefTimestep(streamID, (int) tsID);
// Init var1 and var2
for (size_t j = 0; j < (size_t) nlat; j++)
for (size_t i = 0; i < (size_t) nlon; i++)
var[0][i + j * (size_t) nlon] = dg_wobble((double) ((i + tsID) % (size_t) nlon) / (double) (nlon - 1),
(double) j / (double) (nlat - 1), mscale, mrscale);
for (size_t k = 0; k < (size_t) nlev; ++k)
for (size_t j = 0; j < (size_t) nlat; j++)
for (size_t i = 0; i < (size_t) nlon; i++)
var[1][i + j * (size_t) nlon + k * (size_t) nlon * (size_t) nlat] = dg_wobble(
(double) j / (double) (nlat - 1), (double) ((i + tsID) % (size_t) nlon) / (double) (nlon - 1), mscale, mrscale);
if (filetype == CDI_FILETYPE_EXT)
{
/* EXTRA doesn't store time, only date
* set the value to 0 before checksumming, because a
* time field of 0 is what reading an EXTRA file will
* return */
vdatetime[0] = 0;
}
memcrc_r(&checksum_state[0], (const unsigned char *) vdatetime, sizeof(vdatetime));
memcrc_r(&checksum_state[0], (const unsigned char *) var[0], varSize[0] * sizeof(var[0][0]));
memcrc_r(&checksum_state[1], (const unsigned char *) vdatetime, sizeof(vdatetime));
memcrc_r(&checksum_state[1], (const unsigned char *) var[1], varSize[1] * sizeof(var[1][0]));
// Write var1 and var2
#ifdef TEST_CHUNK_WRITE
{
size_t maxChunkSize = ((size_t) nlon + 1) / 2 * (size_t) nlat * (size_t) nlev;
double *chunkBuf = (double *) Malloc(maxChunkSize * sizeof(double));
int varShape[2][3] = { { nlon, nlat, 1 }, { nlon, nlat, nlev } },
chunk[3][2] = { { 0, nlon / 2 - 1 }, { 0, nlat - 1 }, { 0, 0 } };
chunk[0][0] = 0;
chunk[0][1] = nlon / 2 - 1;
chunk[2][1] = 0;
get_chunk(chunkBuf, var[0], varShape[0], chunk);
streamWriteVarChunk(streamID, varID[0], (const int(*)[2]) chunk, chunkBuf, nmiss);
chunk[2][1] = nlev - 1;
get_chunk(chunkBuf, var[1], varShape[1], chunk);
streamWriteVarChunk(streamID, varID[1], (const int(*)[2]) chunk, chunkBuf, nmiss);
chunk[0][0] = chunk[0][1] + 1;
chunk[0][1] = nlon - 1;
chunk[2][1] = 0;
get_chunk(chunkBuf, var[0], varShape[0], chunk);
streamWriteVarChunk(streamID, varID[0], (const int(*)[2]) chunk, chunkBuf, nmiss);
chunk[2][1] = nlev - 1;
get_chunk(chunkBuf, var[1], varShape[1], chunk);
streamWriteVarChunk(streamID, varID[1], (const int(*)[2]) chunk, chunkBuf, nmiss);
free(chunkBuf);
}
#else
streamWriteVar(streamID, varID[0], var[0], nmiss);
streamWriteVar(streamID, varID[1], var[1], nmiss);
#endif
}
// write checksums to table file
{
FILE *tablefp;
{
char *fname = NULL;
composeFilename(&fname, prefix, -1, "cksum");
if (!(tablefp = fopen(fname, "w")))
{
perror("failed to open table file");
exit(EXIT_FAILURE);
}
free(fname);
}
for (size_t i = 0; i < (size_t) nvars; ++i)
{
uint32_t cksum;
int code;
cksum = memcrc_finish(&checksum_state[i], (off_t) ((varSize[i] * sizeof(var[i][0]) + sizeof(int) * 2) * (size_t) nts));
code = vlistInqVarCode(vlistID, varID[i]);
if (fprintf(tablefp, "%08lx %d\n", (unsigned long) cksum, code) < 0)
{
perror("failed to write table file");
exit(EXIT_FAILURE);
}
}
fclose(tablefp);
}
}
// Close the output stream
streamClose(streamID);
// Destroy the objects
for (size_t i = 0; i < nvars; ++i) free(var[i]);
vlistDestroy(vlistID);
taxisDestroy(taxisID);
zaxisDestroy(zaxisID[0]);
zaxisDestroy(zaxisID[1]);
gridDestroy(gridID);
return 0;
}
/*
* Local Variables:
* c-file-style: "Java"
* c-basic-offset: 2
* indent-tabs-mode: nil
* show-trailing-whitespace: t
* require-trailing-newline: t
* End:
*/
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