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/*
* Copyright 2011, Ben Langmead <langmea@cs.jhu.edu>
*
* This file is part of Bowtie 2.
*
* Bowtie 2 is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Bowtie 2 is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Bowtie 2. If not, see <http://www.gnu.org/licenses/>.
*/
/**
* presets.h
*
* Maps simple command-line options to more complicated combinations of
* options for ease-of-use.
*/
#ifndef PRESETS_H_
#define PRESETS_H_
#include <string>
#include <utility>
#include "ds.h"
class Presets {
public:
Presets() { }
virtual ~Presets() { }
virtual void apply(
const std::string& preset,
std::string& policy,
EList<std::pair<int, std::string> >& opts) = 0;
virtual const char * name() = 0;
};
/**
* Initial collection of presets: 8/14/2011 prior to first Bowtie 2 release.
*/
class PresetsV0 : public Presets {
public:
PresetsV0() : Presets() { }
virtual ~PresetsV0() { }
virtual void apply(
const std::string& preset,
std::string& policy,
EList<std::pair<int, std::string> >& opts);
virtual const char * name() { return "V0"; }
};
#endif /*ndef PRESETS_H_*/
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