1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
|
from distutils.core import setup, Extension
from distutils.command.build import build
import os
import fnmatch
import sys
import imp
import re
import subprocess
def find_package_data_files(directory):
for root, dirs, files in os.walk(directory):
for basename in files:
if fnmatch.fnmatch(basename, '*'):
filename = os.path.join(root, basename)
# if filename.find('/.svn') > -1:
# continue
yield filename.replace('cf/', '', 1)
## Check that the dependencies are met
#for _module in ('netCDF4', 'numpy'):
# try:
# imp.find_module(_module)
# except ImportError as error:
# raise ImportError("Missing dependency. cf requires package %s. %s" %
# (_module, error))
##--- End: for
#
def _read(fname):
"""Returns content of a file.
"""
fpath = os.path.dirname(__file__)
fpath = os.path.join(fpath, fname)
with open(fpath, 'r') as file_:
return file_.read()
def _get_version():
"""Returns library version by inspecting __init__.py file.
"""
return re.search(r'^__version__\s*=\s*[\'"]([^\'"]*)[\'"]',
_read("cf/__init__.py"),
re.MULTILINE).group(1)
version = _get_version()
packages = ['cf']
etc_files = [f for f in find_package_data_files('cf/etc')]
umread_files = [f for f in find_package_data_files('cf/um/umread/c-lib')]
package_data = etc_files + umread_files
class build_umread(build):
'''
Adpated from https://github.com/Turbo87/py-xcsoar/blob/master/setup.py
'''
def run(self):
# Run original build code
build.run(self)
# Build umread
print 'Running build_umread'
build_dir = os.path.join(os.path.abspath(self.build_lib), 'cf/um/umread/c-lib')
cmd = ['make', '-C', build_dir]
rc = subprocess.call(cmd)
def compile():
print '*' * 80
print 'Running:', ' '.join(cmd), '\n'
rc = subprocess.call(cmd)
print '\n', '-' * 80
if not rc:
print 'SUCCESSFULLY BUILT UM read C library'
else:
print 'WARNING: Errors during build of UM read C library will cause failures with UKMO PP and UM format files'
print 'HOWEVER: This will not affect any other cf-python functionality'
#--- End: if
print '-' * 80, '\n'
print '*' * 80
print
print "cf build successful"
print
#--- End: def
self.execute(compile, [], 'compiling umread')
#--- End: class
#with open('README.md') as ldfile:
# long_description = ldfile.read()
long_description = """Home page
=========
* `cf-python <http://cfpython.bitbucket.org>`_
Documentation
=============
* `Online documentation for the latest stable release
<http://cfpython.bitbucket.org/docs/latest/>`_
Dependencies
============
* The package runs on Linux and Mac OS operating systems.
* Requires a python version from 2.6 up to, but not including, 3.0.
* See the `README.md
<https://bitbucket.org/cfpython/cf-python/src/master/README.md>`_
file for further dependencies
Visualisation
=============
* The `cfplot package <https://pypi.python.org/pypi/cf-plot>`_ at
version 1.9.10 or newer provides metadata-aware visualisation for
cf-python fields. This is not a dependency for cf-python.
Command line utilities
======================
* The `cfdump` tool generates text representations on standard output
of the CF fields contained in the input files.
* The `cfa` tool creates and writes to disk the CF fields contained in
the input files.
* During installation these scripts will be copied automatically to a
location given by the ``PATH`` environment variable.
Code license
============
* `MIT License <http://opensource.org/licenses/mit-license.php>`_"""
setup(name = "cf-python",
long_description = long_description,
version = version,
description = "Python interface to the CF data model",
author = "David Hassell",
maintainer = "David Hassell",
maintainer_email = "d.c.hassell at reading.ac.uk",
author_email = "d.c.hassell at reading.ac.uk",
url = "http://cfpython.bitbucket.org/",
download_url = "https://bitbucket.org/cfpython/cf-python/downloads",
platforms = ["Linux", "MacOS"],
keywords = ['cf','netcdf','data','science',
'oceanography','meteorology','climate'],
classifiers = ["Development Status :: 5 - Production/Stable",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT License",
"Topic :: Scientific/Engineering :: Mathematics",
"Topic :: Scientific/Engineering :: Physics",
"Topic :: Scientific/Engineering :: Atmospheric Science",
"Topic :: Utilities",
"Operating System :: POSIX :: Linux",
"Operating System :: MacOS"
],
packages = ['cf',
'cf.um',
'cf.um.umread',
'cf.data',
'cf.netcdf'],
package_data = {'cf': package_data},
scripts = ['scripts/cfa',
'scripts/cfdump'],
requires = ['netCDF4 (>=1.1.1)',
'numpy (>=1.7)',
'matplotlib (>=1.4.2)',
'psutil (>=0.6.0)',
],
cmdclass = {'build': build_umread}, #https://docs.python.org/2/distutils/apiref.html
)
|
