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changeo 0.4.5-1
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Metadata-Version: 1.1
Name: changeo
Version: 0.4.5
Summary: A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
Home-page: http://changeo.readthedocs.io
Author: Namita Gupta, Jason Anthony Vander Heiden
Author-email: immcantation@googlegroups.com
License: Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Download-URL: https://bitbucket.org/kleinstein/changeo/downloads
Description: Change-O - Repertoire clonal assignment toolkit
        ================================================================================
        
        Change-O is a collection of tools for processing the output of V(D)J alignment
        tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and
        reconstructing germline sequences.
         
        Dramatic improvements in high-throughput sequencing technologies now enable 
        large-scale characterization of Ig repertoires, defined as the collection of
        trans-membrane antigen-receptor proteins located on the surface of B cells and
        T cells. Change-O is a suite of utilities to facilitate advanced analysis of
        Ig and TCR sequences following germline segment assignment. Change-O
        handles output from IMGT/HighV-QUEST and IgBLAST, and provides a wide variety of
        clustering methods for assigning clonal groups to Ig sequences. Record sorting, 
        grouping, and various database manipulation operations are also included.
        
Keywords: bioinformatics,sequencing,immunology,adaptive immunity,immunoglobulin,AIRR-seq,Rep-Seq,B cell repertoire analysis,adaptive immune receptor repertoires
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.4
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics