1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
Source: changeo
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Section: science
Testsuite: autopkgtest-pkg-python
Priority: optional
Build-Depends: debhelper (>= 12~),
dh-python,
python3-all,
python3-setuptools (>= 2.0)
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/med-team/changeo
Vcs-Git: https://salsa.debian.org/med-team/changeo.git
Homepage: http://changeo.readthedocs.io
Package: changeo
Architecture: all
Depends: ${python3:Depends},
${misc:Depends}
Recommends: python3-biopython (>=1.65),
python3-pandas (>= 0.15),
python3-scipy (>= 0.14),
python3-presto,
python3-airr
Description: Repertoire clonal assignment toolkit (Python 3)
Change-O is a collection of tools for processing the output of V(D)J
alignment tools, assigning clonal clusters to immunoglobulin (Ig)
sequences, and reconstructing germline sequences.
.
Dramatic improvements in high-throughput sequencing technologies now
enable large-scale characterization of Ig repertoires, defined as the
collection of trans-membrane antigen-receptor proteins located on the
surface of B cells and T cells. Change-O is a suite of utilities to
facilitate advanced analysis of Ig and TCR sequences following germline
segment assignment. Change-O handles output from IMGT/HighV-QUEST
and IgBLAST, and provides a wide variety of clustering methods for
assigning clonal groups to Ig sequences. Record sorting, grouping,
and various database manipulation operations are also included.
.
This package installs the library for Python 3.
|
