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From f0404184d11c67a984fe8e2b450a3854ac88b38b Mon Sep 17 00:00:00 2001
From: Jason Stajich <jasonstajich.phd@gmail.com>
Date: Tue, 13 Apr 2021 12:34:15 -0700
Subject: Canu version is reported with capital
Origin: upstream, https://github.com/sanger-pathogens/circlator/commit/3e223bee8ae581582b3b50c920aa08d94fcdc7bd
canu version in 2.1.1 is 'canu 2.1.1' need to support lowercase
---
circlator/external_progs.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
--- circlator.orig/circlator/external_progs.py
+++ circlator/circlator/external_progs.py
@@ -19,7 +19,7 @@
'prodigal': ('-v', re.compile(r'^Prodigal V([0-9\.]+):')),
'samtools': ('', re.compile(r'Version: (\d+\.\d+[\.\d]*)')),
'spades': ('-v', re.compile(r'v.?([0-9][0-9\.]+)')),
- 'canu': ('-version', re.compile(r'^Canu \D*([\d][\d\.]+)')),
+ 'canu': ('-version', re.compile(r'^[Cc]anu \D*([\d][\d\.]+)')),
}
min_versions = {
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