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;;;; -*- Mode: Lisp; Syntax: ANSI-Common-Lisp; Base: 10; Package: umlisp -*-
;;;; *************************************************************************
;;;; FILE IDENTIFICATION
;;;;
;;;; Name: data-structures.lisp
;;;; Purpose: Basic data objects for UMLisp
;;;; Author: Kevin M. Rosenberg
;;;; Created: Apr 2000
;;;;
;;;; $Id$
;;;;
;;;; This file, part of UMLisp, is
;;;; Copyright (c) 2000-2006 by Kevin M. Rosenberg, M.D.
;;;;
;;;; UMLisp users are granted the rights to distribute and use this software
;;;; as governed by the terms of the GNU General Public License.
;;;; *************************************************************************
(in-package #:umlisp)
;;; Paths for files
(defparameter *release* "2006AD")
(defparameter *umls-path*
(make-pathname :directory (list :absolute "srv" "umls" *release*))
"Path for base of UMLS data files")
(defparameter *meta-dir*
(make-pathname :directory '(:relative "META")))
(defparameter *lex-dir*
(make-pathname :directory '(:relative "LEX")))
(defparameter *net-dir*
(make-pathname :directory '(:relative "NET")))
(defparameter *meta-path*
(merge-pathnames *meta-dir* *umls-path*))
(defparameter *lex-path*
(merge-pathnames *lex-dir* *umls-path*))
(defparameter *net-path*
(merge-pathnames *net-dir* *umls-path*))
(defun umls-path! (p)
(setq *umls-path* (etypecase p
(string (parse-namestring p))
(pathname p)))
(setq *meta-path* (merge-pathnames *meta-dir* *umls-path*))
(setq *lex-path* (merge-pathnames *lex-dir* *umls-path*))
(setq *net-path* (merge-pathnames *net-dir* *umls-path*)))
;;; Structures for parsing UMLS text files
(defparameter *umls-files* nil
"List of umls file structures. Used when parsing text files.")
(defparameter *umls-cols* nil
"List of meta column structures. Used when parsing text files.")
;; Special variables
(defvar *has-fixnum-class* (when (ignore-errors (find-class 'fixnum)) t))
(defvar *octet-sql-storage* t
"Used to deciding field lengths. Use nil if using UTF-8 database encoding. But, UTF-8 will cause MySQL to double the bytes used for fixed field sizes.")
;; Preliminary objects to replace structures
(defclass ufile ()
((subdir :initarg :subdir :accessor subdir)
(dir :initarg :dir :accessor dir)
(fil :initarg :fil :accessor fil)
(table :initarg :table :accessor table)
(des :initarg :des :accessor des)
(fmt :initarg :fmt :accessor fmt)
(cls :initarg :cls :accessor cls)
(rws :initarg :rws :accessor rws)
(bts :initarg :bts :accessor bts)
(fields :initarg :fields :accessor fields)
(ucols :initarg :ucols :accessor ucols))
(:default-initargs :fil nil :table nil :des nil :fmt nil :cls nil :rws nil :bts nil
:fields nil :ucols nil :subdir nil :dir nil)
(:documentation "UMLS File"))
(defclass ucol ()
((col :initarg :col :accessor col)
(des :initarg :des :accessor des)
(ref :initarg :ref :accessor ref)
(min :initarg :min :accessor cmin)
(av :initarg :av :accessor av)
(max :initarg :max :accessor cmax)
(fil :initarg :fil :accessor fil)
(sqltype :initarg :sqltype :accessor sqltype)
(dty :initarg :dty :accessor dty :documentation "new in 2002: suggested SQL datatype")
(parse-fun :initarg :parse-fun :accessor parse-fun)
(quote-str :initarg :quote-str :accessor quote-str)
(datatype :initarg :datatype :accessor datatype)
(custom-value-fun :initarg :custom-value-fun :accessor custom-value-fun))
(:default-initargs :col nil :des nil :ref nil :min nil :av nil :max nil :fil nil
:sqltype nil :dty nil :parse-fun nil :datatype nil
:custom-value-fun nil)
(:documentation "UMLS column"))
(defmethod print-object ((obj ufile) (s stream))
(print-unreadable-object (obj s :type t)
(format s "~A" (fil obj))))
(defmethod print-object ((obj ucol) (s stream))
(print-unreadable-object (obj s :type t)
(format s "~A" (col obj))))
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