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Source: clonalorigin
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
libgsl-dev,
# qt5-qmake-bin,
# qttools5-dev,
# libqt5svg5-dev,
rename
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/clonalorigin
Vcs-Git: https://salsa.debian.org/med-team/clonalorigin.git
Homepage: https://github.com/xavierdidelot/clonalorigin
Rules-Requires-Root: no
Package: clonalorigin
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Recommends: libxml-parserl-perl
Description: inference of homologous recombination in bacteria using whole genome sequences
Bacteria, unlike us, can reproduce on their own. They do however have
mechanisms that transfer DNA between organisms, a process more formally
known as recombination. The mechanisms by which recombination takes
place have been studied extensively in the laboratory but much remains
to be understood concerning how, when and where recombination takes
place within natural populations of bacteria and how it helps them to
adapt to new environments. ClonalOrigin performs a comparative analysis
of the sequences of a sample of bacterial genomes in order to
reconstruct the recombination events that have taken place in their
ancestry.
# Does not work
# see https://lists.debian.org/debian-mentors/2017/12/msg00025.html
#Package: clonalorigin-gui
#Architecture: any
#Depends: ${shlibs:Depends},
# ${misc:Depends}
#Description: inference of homologous recombination in bacteria (GUI)
# Bacteria, unlike us, can reproduce on their own. They do however have
# mechanisms that transfer DNA between organisms, a process more formally
# known as recombination. The mechanisms by which recombination takes
# place have been studied extensively in the laboratory but much remains
# to be understood concerning how, when and where recombination takes
# place within natural populations of bacteria and how it helps them to
# adapt to new environments. ClonalOrigin performs a comparative analysis
# of the sequences of a sample of bacterial genomes in order to
# reconstruct the recombination events that have taken place in their
# ancestry.
# .
# This package contains the GUI for clonalorigin.
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