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#!/usr/bin/make -f
# -*- makefile -*-
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
include /usr/share/dpkg/default.mk
ifneq (,$(filter $(DEB_BUILD_ARCH), mipsel s390x))
export CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS | sed 's/-O[1-9]//') -O0
export CFLAGS:=$(shell dpkg-buildflags --get CFLAGS | sed 's/-O[1-9]//') -O0
endif
%:
dh $@
override_dh_auto_configure:
cp -a src/clustal-omega-config.h src/clustal-omega-config.h~
ifneq (,$(filter mipsel ,$(DEB_BUILD_ARCH)))
dh_auto_configure -- --enable-debug --without-openmp
else
dh_auto_configure
endif
override_dh_auto_build-indep:
# nothing to do here
override_dh_auto_test-indep:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
echo "Do not run build time test"
endif
override_dh_auto_test-arch:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
dh_auto_test -a
# Run additional test from python-biopython package to verify that
# this will work as well
src/clustalo -i debian/tests/biopython_testdata/f002 --guidetree-out temp_test.dnd -o temp_test.aln --outfmt clustal --force
rm temp_test.aln temp_test.dnd
endif
override_dh_auto_install-arch:
dh_auto_install -a
rm -rf debian/tmp/usr/lib/pkgconfig
rm -f debian/tmp/usr/lib/*/libclustalo.la
mv debian/tmp/usr/include debian/libclustalo-dev/usr
mv debian/tmp/usr/lib debian/libclustalo-dev/usr
mv debian/tmp/usr/bin debian/clustalo/usr
override_dh_auto_install-indep:
# Generate doxygen doc
mkdir -p doc
doxygen Doxyfile
find doc -name "*.md5" -delete
override_dh_clean:
if [ -e src/clustal-omega-config.h~ ] ; then \
mv src/clustal-omega-config.h~ src/clustal-omega-config.h ; \
fi
dh_clean
rm -f _configs.sed
rm -rf doc
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