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/**
* Author: Mark Larkin
*
* Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
*/
#ifndef ITERATION_H
#define ITERATION_H
#include "../alignment/Alignment.h"
#include "../general/clustalw.h"
namespace clustalw
{
class Iteration
{
public:
//Iteration();
bool iterationOnTreeNode(int numSeqsProf1, int numSeqsProf2, int& prfLength1,
int& prfLength2, SeqArray* seqArray);
bool removeFirstIterate(Alignment* alnPtr);
private:
void printSeqArray(SeqArray* arrayToPrint);
};
}
#endif
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