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######################################################################
# Automatically generated by qmake (2.01a) Wed Nov 17 10:01:48 2010
######################################################################
TEMPLATE = app
TARGET = clustalx
CONFIG += release static
QT += xml
VERSION = 2.1
win32 {
DEFINES += OS_WINDOWS
}
unix {
DEFINES += OS_UNIX
}
macx {
DEFINES += OS_MAC
}
DEPENDPATH += . \
clustalW \
clustalW/alignment \
clustalW/fileInput \
clustalW/general \
clustalW/interface \
clustalW/multipleAlign \
clustalW/pairwise \
clustalW/substitutionMatrix \
clustalW/tree \
clustalW/tree/UPGMA
INCLUDEPATH += . \
clustalW/general \
clustalW/substitutionMatrix \
clustalW/alignment \
clustalW \
clustalW/fileInput \
clustalW/interface \
clustalW/pairwise \
clustalW/multipleAlign \
clustalW/tree \
clustalW/tree/UPGMA
# Input
HEADERS += AlignmentFormatOptions.h \
AlignmentParameters.h \
AlignmentViewerWidget.h \
AlignmentWidget.h \
AlignOutputFileNames.h \
BootstrapTreeDialog.h \
ClustalQtParams.h \
ColorFileXmlParser.h \
ColorParameters.h \
ColumnScoreParams.h \
FileDialog.h \
HardCodedColorScheme.h \
HelpDisplayWidget.h \
HistogramWidget.h \
KeyController.h \
LowScoringSegParams.h \
mainwindow.h \
PairwiseParams.h \
PostscriptFileParams.h \
ProteinGapParameters.h \
PSPrinter.h \
QTUtility.h \
Resources.h \
SaveSeqFile.h \
SearchForString.h \
SecStructOptions.h \
SeqNameWidget.h \
TreeFormatOptions.h \
TreeOutputFileNames.h \
version.h \
WritePostscriptFile.h \
clustalW/Clustal.h \
clustalW/clustalw_version.h \
clustalW/Help.h \
clustalW/alignment/Alignment.h \
clustalW/alignment/AlignmentOutput.h \
clustalW/alignment/ObjectiveScore.h \
clustalW/alignment/Sequence.h \
clustalW/fileInput/ClustalFileParser.h \
clustalW/fileInput/EMBLFileParser.h \
clustalW/fileInput/FileParser.h \
clustalW/fileInput/FileReader.h \
clustalW/fileInput/GDEFileParser.h \
clustalW/fileInput/InFileStream.h \
clustalW/fileInput/MSFFileParser.h \
clustalW/fileInput/PearsonFileParser.h \
clustalW/fileInput/PIRFileParser.h \
clustalW/fileInput/RSFFileParser.h \
clustalW/general/Array2D.h \
clustalW/general/clustalw.h \
clustalW/general/ClustalWResources.h \
clustalW/general/DebugLog.h \
clustalW/general/debuglogObject.h \
clustalW/general/general.h \
clustalW/general/OutputFile.h \
clustalW/general/param.h \
clustalW/general/RandomAccessLList.h \
clustalW/general/SequenceNotFoundException.h \
clustalW/general/SquareMat.h \
clustalW/general/Stats.h \
clustalW/general/statsObject.h \
clustalW/general/SymMatrix.h \
clustalW/general/UserParameters.h \
clustalW/general/userparams.h \
clustalW/general/Utility.h \
clustalW/general/utils.h \
clustalW/general/VectorOutOfRange.h \
clustalW/general/VectorUtility.h \
clustalW/interface/CommandLineParser.h \
clustalW/interface/InteractiveMenu.h \
clustalW/multipleAlign/Iteration.h \
clustalW/multipleAlign/LowScoreSegProfile.h \
clustalW/multipleAlign/MSA.h \
clustalW/multipleAlign/MyersMillerProfileAlign.h \
clustalW/multipleAlign/ProfileAlignAlgorithm.h \
clustalW/multipleAlign/ProfileBase.h \
clustalW/multipleAlign/ProfileStandard.h \
clustalW/multipleAlign/ProfileWithSub.h \
clustalW/pairwise/FastPairwiseAlign.h \
clustalW/pairwise/FullPairwiseAlign.h \
clustalW/pairwise/PairwiseAlignBase.h \
clustalW/substitutionMatrix/globalmatrix.h \
clustalW/substitutionMatrix/matrices.h \
clustalW/substitutionMatrix/SubMatrix.h \
clustalW/tree/AlignmentSteps.h \
clustalW/tree/ClusterTree.h \
clustalW/tree/ClusterTreeAlgorithm.h \
clustalW/tree/ClusterTreeOutput.h \
clustalW/tree/dayhoff.h \
clustalW/tree/NJTree.h \
clustalW/tree/RandomGenerator.h \
clustalW/tree/Tree.h \
clustalW/tree/TreeInterface.h \
clustalW/tree/UnRootedClusterTree.h \
clustalW/tree/UPGMA/Node.h \
clustalW/tree/UPGMA/RootedClusterTree.h \
clustalW/tree/UPGMA/RootedGuideTree.h \
clustalW/tree/UPGMA/RootedTreeOutput.h \
clustalW/tree/UPGMA/UPGMAAlgorithm.h \
clustalW/tree/UPGMA/upgmadata.h \
clustalW/general/InvalidCombination.cpp
SOURCES += AlignmentFormatOptions.cpp \
AlignmentParameters.cpp \
AlignmentViewerWidget.cpp \
AlignmentWidget.cpp \
AlignOutputFileNames.cpp \
BootstrapTreeDialog.cpp \
ColorFileXmlParser.cpp \
ColorParameters.cpp \
ColumnScoreParams.cpp \
FileDialog.cpp \
HardCodedColorScheme.cpp \
HelpDisplayWidget.cpp \
HistogramWidget.cpp \
KeyController.cpp \
LowScoringSegParams.cpp \
main.cpp \
mainwindow.cpp \
PairwiseParams.cpp \
PostscriptFileParams.cpp \
ProteinGapParameters.cpp \
PSPrinter.cpp \
QTUtility.cpp \
Resources.cpp \
SaveSeqFile.cpp \
SearchForString.cpp \
SecStructOptions.cpp \
SeqNameWidget.cpp \
TreeFormatOptions.cpp \
TreeOutputFileNames.cpp \
WritePostscriptFile.cpp \
clustalW/Clustal.cpp \
clustalW/Help.cpp \
clustalW/alignment/Alignment.cpp \
clustalW/alignment/AlignmentOutput.cpp \
clustalW/alignment/ObjectiveScore.cpp \
clustalW/alignment/Sequence.cpp \
clustalW/fileInput/ClustalFileParser.cpp \
clustalW/fileInput/EMBLFileParser.cpp \
clustalW/fileInput/FileParser.cpp \
clustalW/fileInput/FileReader.cpp \
clustalW/fileInput/GDEFileParser.cpp \
clustalW/fileInput/InFileStream.cpp \
clustalW/fileInput/MSFFileParser.cpp \
clustalW/fileInput/PearsonFileParser.cpp \
clustalW/fileInput/PIRFileParser.cpp \
clustalW/fileInput/RSFFileParser.cpp \
clustalW/general/ClustalWResources.cpp \
clustalW/general/DebugLog.cpp \
clustalW/general/InvalidCombination.cpp \
clustalW/general/OutputFile.cpp \
clustalW/general/Stats.cpp \
clustalW/general/SymMatrix.cpp \
clustalW/general/UserParameters.cpp \
clustalW/general/Utility.cpp \
clustalW/general/VectorOutOfRange.cpp \
clustalW/interface/CommandLineParser.cpp \
clustalW/interface/InteractiveMenu.cpp \
clustalW/multipleAlign/Iteration.cpp \
clustalW/multipleAlign/LowScoreSegProfile.cpp \
clustalW/multipleAlign/MSA.cpp \
clustalW/multipleAlign/MyersMillerProfileAlign.cpp \
clustalW/multipleAlign/ProfileBase.cpp \
clustalW/multipleAlign/ProfileStandard.cpp \
clustalW/multipleAlign/ProfileWithSub.cpp \
clustalW/pairwise/FastPairwiseAlign.cpp \
clustalW/pairwise/FullPairwiseAlign.cpp \
clustalW/substitutionMatrix/SubMatrix.cpp \
clustalW/tree/AlignmentSteps.cpp \
clustalW/tree/ClusterTree.cpp \
clustalW/tree/ClusterTreeOutput.cpp \
clustalW/tree/NJTree.cpp \
clustalW/tree/RandomGenerator.cpp \
clustalW/tree/Tree.cpp \
clustalW/tree/TreeInterface.cpp \
clustalW/tree/UnRootedClusterTree.cpp \
clustalW/tree/UPGMA/Node.cpp \
clustalW/tree/UPGMA/RootedClusterTree.cpp \
clustalW/tree/UPGMA/RootedGuideTree.cpp \
clustalW/tree/UPGMA/RootedTreeOutput.cpp \
clustalW/tree/UPGMA/UPGMAAlgorithm.cpp
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