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#include <QPushButton>
#include <QGroupBox>
#include <QRadioButton>
#include <QVBoxLayout>
#include <QGridLayout>
#include <QSizePolicy>
#include <QComboBox>
#include <QtGui>
#include <QLabel>
#include <QString>
#include <QMessageBox>
#include "ProteinGapParameters.h"
#include "clustalW/general/userparams.h"
ProteinGapParameters::ProteinGapParameters()
: gapDist(4)
{
setWindowTitle("Protein Gap Parameters");
otherParams = new QGroupBox;
QVBoxLayout* mainLayout = new QVBoxLayout;
okButton = new QPushButton(tr("OK"));
okButton->setSizePolicy(QSizePolicy::Maximum, QSizePolicy::Maximum);
connect(okButton, SIGNAL(clicked()), this, SLOT(accept()));
setUpLayout();
mainLayout->addWidget(okButton);
mainLayout->addWidget(otherParams);
setLayout(mainLayout);
}
void ProteinGapParameters::setUpLayout()
{
setUpOtherParams();
QGridLayout *otherParamLayout = new QGridLayout;
otherParamLayout->addWidget(resSpecPenLabel, 0, 0);
otherParamLayout->addWidget(resSpecPen, 0, 1);
otherParamLayout->addWidget(hydSpecPenLabel, 1, 0);
otherParamLayout->addWidget(hydSpecPen, 1, 1);
otherParamLayout->addWidget(hydroPhilicResLabel, 2, 0);
otherParamLayout->addWidget(hydroPhilicRes, 2, 1);
otherParamLayout->addWidget(gapSeparationDistLabel, 3, 0);
otherParamLayout->addWidget(gapSeparationDist, 3, 1);
otherParamLayout->addWidget(endGapSeparationLabel, 4, 0);
otherParamLayout->addWidget(endGapSeparation, 4, 1);
otherParams->setLayout(otherParamLayout);
}
void ProteinGapParameters::setUpOtherParams()
{
resSpecPen = new QComboBox();
resSpecPen->addItem("On");
resSpecPen->addItem("Off");
resSpecPenLabel = new QLabel(tr("Residue-specific Penalties"));
hydSpecPen = new QComboBox();
hydSpecPen->addItem("On");
hydSpecPen->addItem("Off");
hydSpecPenLabel = new QLabel(tr("Hydrophilic Penalties"));
endGapSeparation = new QComboBox();
endGapSeparation->addItem("Off");
endGapSeparation->addItem("On");
endGapSeparationLabel = new QLabel(tr("End Gap Separation"));
hydroPhilicRes = new QLineEdit;
hydroPhilicResLabel = new QLabel(tr("Hydrophilic Residues: "));
gapSeparationDist = new QLineEdit;
gapSeparationDistLabel = new QLabel(tr("Gap Separation Distance [0-100]: "));
setInitialParameterValues();
}
void ProteinGapParameters::setInitialParameterValues()
{
if(clustalw::userParameters->getNoPrefPenalties())
{
resSpecPen->setCurrentIndex(1);
}
else
{
resSpecPen->setCurrentIndex(0);
}
if(clustalw::userParameters->getNoHydPenalties())
{
hydSpecPen->setCurrentIndex(1);
}
else
{
hydSpecPen->setCurrentIndex(0);
}
if(clustalw::userParameters->getUseEndGaps())
{
endGapSeparation->setCurrentIndex(1);
}
else
{
endGapSeparation->setCurrentIndex(0);
}
QString hydRes(clustalw::userParameters->getHydResidues().c_str());
hydroPhilicRes->setText(hydRes);
QString num;
num = num.setNum(clustalw::userParameters->getGapDist());
gapSeparationDist->setText(num);
}
void ProteinGapParameters::accept()
{
// We have 2 line edit fields. These must be validated.
// The first one must contain only letters.
QString hydRes = hydroPhilicRes->text();
QString hydResEdited;
QChar res;
// The second one must contain a number between 0 and 100.
for(int i = 0; i < hydRes.size(); i++)
{
res = hydRes[i];
if(res.isLetter())
{
hydResEdited += res;
}
}
hydRes = hydResEdited;
// Set the hydrophilic residues
clustalw::userParameters->setHydResidues(hydRes.toStdString());
bool ok;
QString gapDist = gapSeparationDist->text();
int dist;
dist = gapDist.toInt(&ok);
if(ok && dist >= 0 && dist <= 100)
{
clustalw::userParameters->setGapDist(dist);
}
// Now the combo boxes
if(resSpecPen->currentIndex() == 1)
{
clustalw::userParameters->setNoPrefPenalties(true);
}
else
{
clustalw::userParameters->setNoPrefPenalties(false);
}
if(hydSpecPen->currentIndex() == 1)
{
clustalw::userParameters->setNoHydPenalties(true);
}
else
{
clustalw::userParameters->setNoHydPenalties(false);
}
if(endGapSeparation->currentIndex() == 1)
{
clustalw::userParameters->setUseEndGaps(true);
}
else
{
clustalw::userParameters->setUseEndGaps(false);
}
setResult(QDialog::Accepted);
hide();
}
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