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#ifndef LOWSCORINGSEGPARAMS_H
#define LOWSCORINGSEGPARAMS_H
#include <QDialog>
class QPushButton;
class QGroupBox;
class QRadioButton;
class QComboBox;
class QLabel;
class QButtonGroup;
class QSlider;
class QLCDNumber;
class QGridLayout;
class QHBoxLayout;
class QVBoxLayout;
class LowScoringSegParams : public QDialog
{
Q_OBJECT
public:
LowScoringSegParams();
protected:
void showEvent(QShowEvent* event);
private slots:
void accept();
void browseProtein();
void browseDNA();
void userProteinClicked();
void userDNAClicked();
private:
void setUpLayout();
void setUpProteinMatRadioButtons();
void setInitialProteinMat();
void setInitialDNAMat();
void setInitialParamValues();
void setUpDNAMatRadioButtons();
void setUpOtherParams();
void radioSetUsingUserProtein();
QVBoxLayout* mainLayout;
QHBoxLayout* horizLayoutAA;
QHBoxLayout* horizLayoutDNA;
QGridLayout* grid;
QGridLayout* protMatLayout;
QGridLayout* dnaMatLayout;
QPushButton* okButton;
QPushButton* loadProtMat;
QPushButton* loadDNAMat;
QGroupBox* sliderGridBox;
QGroupBox* proteinMatGridBox;
QGroupBox* dnaMatGridBox;
QGroupBox* loadDNAGroup;
QGroupBox* loadProteinGroup;
QButtonGroup* proteinWeightMat;
QRadioButton* gonnetPAM80;
QRadioButton* gonnetPAM120;
QRadioButton* gonnetPAM250;
QRadioButton* gonnetPAM350;
QRadioButton* aaUserMat;
QButtonGroup* DNAWeightMat;
QRadioButton* IUB;
QRadioButton* clustal;
QRadioButton* dnaUserMat;
QLabel* minLenSegsLabel;
QLabel* dnaMarkingScaleLabel;
QSlider* minLenSegs;
QSlider* dnaMarkingScale;
QLCDNumber* minLenSegsLCD;
QLCDNumber* dnaMarkingScaleLCD;
QLabel* userProteinMatrix;
QLabel* userDNAMatrix;
QString aaMatrixPath;
QString dnaMatrixPath;
std::string aaMatrixFile;
std::string dnaMatrixFile;
bool proteinMatLoaded;
bool dnaMatLoaded;
};
#endif
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