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/**
* Author: Mark Larkin
*
* Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
*/
#ifndef UTILITY_H
#define UTILITY_H
#include <cstdlib>
#include <stdio.h>
#include <string.h>
#include <errno.h>
#include <stdarg.h>
#include <ctype.h>
#include "clustalw.h"
class QLabel;
using namespace std;
namespace clustalw
{
class Utility
{
public:
Utility();
virtual ~Utility(){};
char* rTrim(char *str);
void rTrim(string *str);
char* blankToUnderscore(char *str);
string blankToUnderscore(string str);
void getStr(string instr, string& outstr);
char getChoice(string instr);
double getReal(const char *instr, double minx, double maxx, double def);
int getInt(const char *instr,int minx,int maxx, int def);
unsigned long getUniqueSequenceIdentifier();
bool lineType(char *line, const char *code);
bool blankLine(char *line);
bool blankLineNumericLabel(char *line);
void getPath(string str, string *path);
virtual char promptForYesNo(char *title, const char *prompt);
virtual char promptForYesNo(const char *title, const char *prompt);
virtual void error( char *msg,...);
virtual void error( const char *msg,...);
virtual void warning( char *msg,...);
virtual void warning( const char *msg,...);
virtual void info( char *msg,...);
virtual void info( const char *msg,...);
virtual void myname( char *myname );
template <class T> T MIN(T x, T y){if (x <= y){return x;}return y;}
template <class T> T MAX(T x, T y){if (x >= y){return x;}return y;}
// Note the following function will never be used from this class. It is for the
// QT version. I need it here so that I can add the function to QTUtility.
virtual void setInfoLabelPtr(QLabel* ptrToLabelObj);
bool isNumeric(char ch);
double average(std::vector<double>& v);
double stdDev(std::vector<double>& v);
double median(std::vector<double> v);
/* Attributes */
void beQuiet(bool b) {quiet=b;};
private:
/* Functions */
/* Attributes */
bool quiet;
};
}
#endif
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