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/**
* Author: Mark Larkin
*
* Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
*/
#ifndef PAIRWISEALIGNBASE_H
#define PAIRWISEALIGNBASE_H
#include <vector>
#include "../alignment/Alignment.h"
namespace clustalw
{
class PairwiseAlignBase
{
public:
virtual ~PairwiseAlignBase(){};
/* Functions */
virtual void pairwiseAlign(Alignment *alignPtr, DistMatrix *distMat, int iStart,
int iEnd, int jStart, int jEnd) = 0;
/* Attributes */
private:
/* Functions */
/* Attributes */
};
}
#endif
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