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/**
* Author: Mark Larkin
*
* Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
*/
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#include "AlignmentSteps.h"
namespace clustalw
{
void AlignmentSteps::saveSet(int n, int *groups)
{
vector<int> tempVec;
tempVec.resize(n + 1);
tempVec[0] = 0;
for(int i = 1; i < n + 1; i++)
{
tempVec[i] = groups[i - 1];
}
steps.push_back(tempVec);
numSteps++;
}
void AlignmentSteps::saveSet(vector<int>* groups)
{
steps.push_back(*groups);
numSteps++;
}
int AlignmentSteps::getNumSteps()
{
return numSteps;
}
void AlignmentSteps::printAlignSteps()
{
int rows = steps.size();
for(int i = 1; i < rows; i++)
{
for(int j = 1; j < (int)steps[i].size(); j++)
{
cout << " " << steps[i][j];
}
cout << "\n";
}
cout << "\n\n";
}
void AlignmentSteps::clear()
{
int size = steps.size();
for(int i = 0; i < size; i++)
{
steps[i].clear();
}
steps.clear();
steps.push_back(vector<int>());
numSteps = 0;
}
}
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