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#include <QPushButton>
#include <QGroupBox>
#include <QVBoxLayout>
#include <QGridLayout>
#include <QSizePolicy>
#include <QComboBox>
#include <QtGui>
#include <QLabel>
#include <QCheckBox>
#include "TreeFormatOptions.h"
#include "clustalW/general/userparams.h"
TreeFormatOptions::TreeFormatOptions()
{
fileGridBox = new QGroupBox("Output Files");
otherParams = new QGroupBox;
QVBoxLayout* mainLayout = new QVBoxLayout;
okButton = new QPushButton(tr("OK"));
okButton->setSizePolicy(QSizePolicy::Maximum, QSizePolicy::Maximum);
connect(okButton, SIGNAL(clicked()), this, SLOT(accept()));
setUpLayout();
mainLayout->addWidget(okButton);
mainLayout->addWidget(fileGridBox);
mainLayout->addWidget(otherParams);
setLayout(mainLayout);
}
void TreeFormatOptions::setUpLayout()
{
setUpRadioButtons();
QGridLayout *grid = new QGridLayout;
grid->addWidget(clustal, 0, 0);
grid->addWidget(phylip, 0, 1);
grid->addWidget(phylipDistMat, 1, 0);
grid->addWidget(nexus, 1, 1);
grid->addWidget(percIdentMat, 2, 0);
fileGridBox->setLayout(grid);
setUpOtherParams();
QGridLayout *otherParamLayout = new QGridLayout;
otherParamLayout->addWidget(bootStrapLabel, 0, 0);
otherParamLayout->addWidget(bootStrap, 0, 1);
otherParams->setLayout(otherParamLayout);
}
void TreeFormatOptions::setUpRadioButtons()
{
clustal = new QCheckBox("CLUSTAL format tree");
percIdentMat = new QCheckBox("% identity matrix");
phylip = new QCheckBox("Phylip format tree");
phylipDistMat = new QCheckBox("Phylip distance matrix");
nexus = new QCheckBox("Nexus format tree");
if(clustalw::userParameters->getOutputTreeClustal())
{
clustal->setChecked(true);
}
if(clustalw::userParameters->getOutputPim())
{
percIdentMat->setChecked(true);
}
if(clustalw::userParameters->getOutputTreePhylip())
{
phylip->setChecked(true);
}
if(clustalw::userParameters->getOutputTreeDistances())
{
phylipDistMat->setChecked(true);
}
if(clustalw::userParameters->getOutputTreeNexus())
{
nexus->setChecked(true);
}
}
void TreeFormatOptions::setUpOtherParams()
{
bootStrap = new QComboBox();
bootStrap->addItem("Branch");
bootStrap->addItem("Node");
if(clustalw::userParameters->getBootstrapFormat() == clustalw::BS_NODE_LABELS)
{
bootStrap->setCurrentIndex(1);
}
else
{
bootStrap->setCurrentIndex(0);
}
bootStrapLabel = new QLabel(tr("Bootstrap labels on :"));
}
void TreeFormatOptions::accept()
{
if(clustal->isChecked())
{
clustalw::userParameters->setOutputTreeClustal(true);
}
else
{
clustalw::userParameters->setOutputTreeClustal(false);
}
if(percIdentMat->isChecked())
{
clustalw::userParameters->setOutputPim(true);
}
else
{
clustalw::userParameters->setOutputPim(false);
}
if(phylip->isChecked())
{
clustalw::userParameters->setOutputTreePhylip(true);
}
else
{
clustalw::userParameters->setOutputTreePhylip(false);
}
if(phylipDistMat->isChecked())
{
clustalw::userParameters->setOutputTreeDistances(true);
}
else
{
clustalw::userParameters->setOutputTreeDistances(false);
}
if(nexus->isChecked())
{
clustalw::userParameters->setOutputTreeNexus(true);
}
else
{
clustalw::userParameters->setOutputTreeNexus(false);
}
if(bootStrap->currentIndex() == 1)
{
clustalw::userParameters->setBootstrapFormat(clustalw::BS_NODE_LABELS);
}
else
{
clustalw::userParameters->setBootstrapFormat(clustalw::BS_BRANCH_LABELS);
}
setResult(QDialog::Accepted);
hide();
}
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