File: Introduction.html

package info (click to toggle)
cluster3 1.59%2Bds-3
  • links: PTS, VCS
  • area: non-free
  • in suites: bookworm, bullseye, sid
  • size: 5,624 kB
  • sloc: ansic: 9,948; python: 2,018; perl: 1,566; makefile: 132; sh: 27
file content (66 lines) | stat: -rw-r--r-- 2,863 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html>
<!-- Created by GNU Texinfo 6.6, http://www.gnu.org/software/texinfo/ -->
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<title>Introduction (Cluster 3.0 for Windows, Mac OS X, Linux, Unix)</title>

<meta name="description" content="Introduction (Cluster 3.0 for Windows, Mac OS X, Linux, Unix)">
<meta name="keywords" content="Introduction (Cluster 3.0 for Windows, Mac OS X, Linux, Unix)">
<meta name="resource-type" content="document">
<meta name="distribution" content="global">
<meta name="Generator" content="makeinfo">
<link href="index.html#Top" rel="start" title="Top">
<link href="Contents.html#SEC_Contents" rel="contents" title="Table of Contents">
<link href="index.html#Top" rel="up" title="Top">
<link href="Data.html#Data" rel="next" title="Data">
<link href="Contents.html#Contents" rel="prev" title="Contents">
<style type="text/css">
<!--
a.summary-letter {text-decoration: none}
blockquote.indentedblock {margin-right: 0em}
div.display {margin-left: 3.2em}
div.example {margin-left: 3.2em}
div.lisp {margin-left: 3.2em}
kbd {font-style: oblique}
pre.display {font-family: inherit}
pre.format {font-family: inherit}
pre.menu-comment {font-family: serif}
pre.menu-preformatted {font-family: serif}
span.nolinebreak {white-space: nowrap}
span.roman {font-family: initial; font-weight: normal}
span.sansserif {font-family: sans-serif; font-weight: normal}
ul.no-bullet {list-style: none}
-->
</style>


</head>

<body lang="en">
<span id="Introduction"></span><div class="header">
<p>
Next: <a href="Data.html#Data" accesskey="n" rel="next">Data</a>, Previous: <a href="Contents.html#Contents" accesskey="p" rel="prev">Contents</a>, Up: <a href="index.html#Top" accesskey="u" rel="up">Top</a> &nbsp; [<a href="Contents.html#SEC_Contents" title="Table of contents" rel="contents">Contents</a>]</p>
</div>
<hr>
<span id="Introduction-1"></span><h2 class="chapter">1 Introduction</h2>

<p>Cluster and TreeView are programs that provide a computational and graphical
environment for analyzing data from DNA microarray experiments, or other genomic
datasets. The program Cluster can organize and analyze the data in a number of
different ways. TreeView allows the organized data to
be visualized and browsed.
</p>
<p>This manual is intended as a reference for using the software, and not as a
comprehensive introduction to the methods employed. Many of the methods are
drawn from standard statistical cluster analysis. There are excellent textbooks
available on cluster analysis which are listed in the bibliography at the end.
The bibliography also contains citations for recent publications in the
biological sciences, especially genomics, that employ
methods similar to those used here.
</p>



</body>
</html>