File: RELEASE-NOTES

package info (click to toggle)
cmor 3.6.1-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 16,248 kB
  • sloc: ansic: 26,825; f90: 14,085; python: 11,312; sh: 2,879; makefile: 378; xml: 168
file content (260 lines) | stat: -rw-r--r-- 20,775 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
2018-02-14 : Release 3.3.1
2018-12-12 : Release 3.3.0
2018-11-08 : Release 3.2.8
2018-09-14 : Release 3.2.7
2018-08-31 : Release 3.2.6
2017-00-00 : Release 3.2.5
2017-06-16 : Release 3.2.4
2017-04-19 : Release 3.2.3
2017-02-22 : Release 3.2.2
2016-11-23 : Release 3.2.0
2016-09-08 : Release 3.1.2
2016-06-14 : Release 3.1.0
2015-12-23 : Clean up cmor code, preparation for cmor3.
2013-12-03 : Tagging 2.9.1 for official release.
2012-12-14 : Tagging 2.9.0.
2013-11-20 : Merged Jamie's branch fixes #4
2013-11-20 : Make sure -lm is in C test compile line
2013-06-09 : Fixed Jamie's bug for limited area
2013-06-05 : Fixed time gap
2013-06-05 : Fixed free issue (thx Jamie for patch)
2013-06-05 : Fixed first/last_bound issue with appending files and store_with
2012-12-14 : Tagging 2.8.2
2012-12-14 : Fixed a bug in py wrapper where some list object where decref where they shouldn't leading to memory leaks, thanks Jamie and al. for this bug fix
2012-01-30 : Tagging 2.8.1
2012-01-30 : climatological files now end wirh -clim.nc instead of _clim.nc
2011-11-08 : Tagging 2.8.0
2011-11-08 : Realized there was a difference in calendar names between cdtime and the CF conventions. CMOR now maps correctly the CF names to the cdtime names for correct internal processing.
2011-10-24 : Removed the treatlon in case 'X' axis has units not in degrees
2011-06-23 : Tagging 2.7.1
2011-06-23 : removing sloppy print statements in python wrap
2011-06-21 : Tagging 2.7.0
2011-06-21 : Fixed bug using the wrong dims for checking validity of arrays in fortran interface - for vertices-
2011-06-13 : Tagging 2.6.1
2011-06-13 : Fixed bug triggering wrong warning on bounds being at the beg/end of month
2011-05-26 : File name for subhourly were wrongly constructed, upped version to 2.6
2011-05-24 : when we decide to add the extra time precision in the file name only for less than 6hr, i did this only for the first time, not the second one... Fixed.
2011-04-27 : Tagging 2.5.9
2011-04-27 : fixed file name for climatologies, last bounds was set improperly
2011-04-26 : was setting coordinates attribute multiple times, now first check if the bit we are trying to add is already in
2011-04-11 : releasing 2.5.8
2011-04-07 : only adding extra time precision in file names if it is < 6hr instead of 1 day
2011-04-05 : not overwriting user time values in climatology case
2011-02-25 : releasing 2.5.7
2011-02-25 : fixed bug for dims of length one where bounds needed to be flliped, it used to raise an unwarranted error
2011-02-23 : releasing 2.5.6
2011-02-23 : got cmor_set_variable_attribute to actually do something and not raise error all the time, thx to Larry Solheim to spot this.
2011-02-23 : fixed issue when writing 1 time step at a time for climatological means, issue could led to seg fault and bad final file names, thx to Koji Ogochi to spot this one.
2011-02-16 : releasing 2.5.5
2011-02-16 : added process id to temporary file names so that code can be run via mpi
2011-02-02 : releasing 2.5.4
2011-02-02 : fixed a memory issue in the Python API for get_variable_attribute and has_variable_attribute
2011-01-31 : releasing 2.5.3
2011-01-25 : path produced w/o '/' or weird characters
2011-01-25 : cannot set global attribute if it is an attribute that can be set via cmor_dataset
2011-01-25 : cannot set var attribute after var has been created into nc file
2011-01-25 : cannot set var attribute if it is settable via cmor_variable
2011-01-25 : can handle "character type" singleton dimensions
2011-01-25 : does not stores units on character typevariables
2011-01-24 : cmor_axes, interval check cleanup errormessage, now specifies which units the diff calaculated is in.
2011-01-24 : updated cmor_set_variable_attrubtes to go thru an 'internal' one
2010-12-17 : when passing character type axes, checking output is suppposed to be character
2010-12-17 : fixed bug found by Jamie that didn't pass the correct args in get_var_Attribute
2010-12-16 : added two python test for var with string dimensions
2010-12-06 : turned off udunits2 warnings when reading database in
2010-11-18 : added a '/' after output path for tmp file testing
2010-11-12 : Updated documentation
2010-11-11 : updated pywrapper from Jamie
2010-11-11 : new examples into Makefile for Python
2010-11-11 : added a flag that says need to cal cmor_grid on some axis (site and location)
2010-11-05 : new doc updated by Karl.
2010-11-05 : removed option, for now, to create non-standard calendars because the dates in filenames would be wrong.
2010-11-05 : file_name=True ignored in python if no var_id is passed to it as well.
2010-11-05 : added realm to gridspec file names
2010-11-05 : reverted ext_cell_measures to cell_measures
2010-10-27 : edited the test for permission on output directory, used to fail if you had group write privileges but that wasnt your main group
2010-10-22 : Tagging 2.4.0
2010-10-22 : updated docs to reflect all these changes
2010-10-22 : exposed cmor_set/get/has_variable in Fortran interface, just like Python works only on "string" variables
2010-10-22 : add optional "parent_experiment_rip" to cmor_dataset (C,Fortran,Python)
2010-10-22 : fixed bug with variables using "grids" and singleton dimensions
2010-10-22 : upgraded to 2.4 in devel branch
2010-10-22 : exposed cmor_set_variable_attribute to users in Python
2010-10-22 : cell_measures var attribute is now called ext_cell_measures
2010-10-06 : tagging 2.3
2010-09-29 : Cleaned up error messages, now tries to output var/axis it was working on as well as table used.
2010-09-29 : When value that exceeds valid_min/max is found, now returns location of extreme point instead of first point encountered, as well as actuall coordinates values (not just indices)
2010-09-22 : Joerg found a bug that was due to checking only the refvar.dimension w/o checking the actual tables as well
2010-09-01 : fixed a bug on mac 32bit when reading in net3 version string
2010-09-01 : some vars with grid and singleton dims were wrongly analyzed by cmor_variable has not being defined with the right number of dimmensions.
2010-09-01 : updated doc. Was saying you can pass "none" for units when it really is: ""
2010-09-01 : updated doc. Was wrongly stating you can pass "none" if no missing_value
2010-08-24 : when writing time only variables, the time_bnds would fail to write if passed at cmor_write time.
2010-08-23 : tagging 2.2
2010-08-23 : DRS was wrongly constructed for table Oclim
2010-08-23 : tagging 2.1
2010-08-23 : create_output_path doesn't need to be called b4 cmor_write any more.
2010-08-19 : dimensions were always stored as double regardless of what the table wanted. Fixed
2010-08-19 : go thru cmor_create_path to figure out isfixed and set frequency, even if directory layout is not required.
2010-08-19 : checker: works with version number of format major.minor.patch
2010-08-19 : checker: update git url from wich to fetch md5s tables
2010-08-19 : forcings attribute can now end with notes in between parenthesis
2010-08-18 : added a check for cmor_variables making sure axes/grid ids passed are valid
2010-08-18 : downgraded abs min/max CRITICAL error to NORMAL
2010-08-18 : dowgraded invalid min/max from NORMAL error to WARNING
2010-08-10 : cmor_setup, was initalizing strings beyhond the max number fo elts, cause seg fault with python (loop was to CMOR_MAX_ELEMENTS when it should have been CMOR_MAX_ATTRIBUTES)
2010-06-14 : expanded the CMOR_MAX_GRIDS to 100 form 10. And replaced the "10" in the code with CMOR_MAX_GRIDS
2010-06-14 : updated python example and testtable to work w/o error about abs mean
2010-06-11 : shorten the TestTables to a minimum so they can't be confused with the real one and used in production
2010-06-11 : removed tables unused by examples
2010-06-11 : add ${Prefix}/share to the list of locations where to search for tables
2010-06-09 : removing files related to Tables, moving the Tables dir to TestTables
2010-06-09 : cmor axis entry "requested_bounds" now is also valid used to be "bounds_requested"
2010-06-09 : cmor_axis non-monotnic error was showing incoorect set of bad values
2010-06-09 : changed absolute mean error from CRITICAL to NORMAL if less than an order of magnitude off
2010-06-09 : tables generated with min/max now being 3 sigma (from 2) and (20% form 5%)
2010-06-09 : Coord: depth_coord was wrongly defined as positive up, fixed
2010-06-01 : table generation was sometimes gen same value for valid_min and valid_max, fixed
2010-06-01 : table generation using %.4g instead of %.2g for valid min/max
2010-06-01 : new tables to reflect that
2010-06-01 : updated examples to work with abs min/max from tables
2010-06-01 : edited example to have only 1 file to edit when tweaking the data generation in test fortran/C samples.
2010-06-01 : changed cmor_dataset to trim input arguments, revelant mostly for calendar that was declared as wrong if it had extra spaces
2010-06-01 : fixed error message formating for value less or greater than valid_min/max, now uses nice formatting %.4g instead of unreadable for big numbers: %lf
2010-06-09 : yep
2010-05-28 : Tagging RC10
2010-05-28 : cmor_checker now checks table md5s in file vs the one passed and vs our control online
2010-05-28 : new tables that include the ok_min/max_mean_absolute value
2010-05-28 : reverted file name construction to use first/last time. BUT added precision for daily and higher frequencies
2010-05-28 : fixed a bug in cmor checker when variable entry was "pop" would break
2010-05-28 : fixed default values of noerror in script from True to cmor.CMOR_CRITICAL
2010-05-27 : switch version tagging from svn to git
2010-05-27 : fixed  abug in test patch number of NetCDF3 version i was using = instead of ==
2010-05-25 : trying a new way to store date in file names for Jamie. Probably going to be reverted
2010-05-24 : changed the way the final file name is constructed, uses time bounds if present, otherwise as before uses time values
2010-05-20 : tagging RC9
2010-05-20 : fixed a bug in python interface when converting zfactor bounds array from 2D to the required 1D.
2010-05-20 : "changed sign" was always written in history even when not necessary. Fixed
2010-05-20 : newer tables
2010-05-12 : CMIP5_fx add time dependency, fixed
2010-05-12 : user could pass any calendar name! Now has to match valid ones!
2010-05-11 : updated tables
2010-05-11 : created a xls2csv script MUCH improved my life when Karl changes tables from now on.
2010-05-11 : sigma coord and irregular girds: implemented
2010-05-11 : cmor_close now preserves the original  variable id
2010-05-11 : cmor_zfactor MUST have values if zfactor is not time dependent
2010-04-29 : updated repo to git
2010-04-27 : updated examples to reflect new required things
2010-04-27 : colored Makefile output for fortran testing, makes it eaiser to see what's being tested
2010-04-27 : API changes for Jamie, close_variable can now preserve a variable and redefine it for later use (new file) by user. See doc and test_python_max_variables_2.py for details.
2010-04-27 : when creating new variable, looks for the first available in the list instead of always adding one. This helps preventing users to run into "maximum number of variables" when opeing/closing a lot of files. See test_python_max_variables.py for details.
2010-04-27 : model_id must now match begining of source if CMIP5
2010-04-27 : institute_id is now required in tables
2010-04-27 : changed history from "reverted axes" to "inverted axis"
2010-04-27 : "hyphenized model_id has nor more "-" at the end
2010-04-27 : comment: original_table_comment changed to [project_id]_table_comment where [project_id] is what the table specifies
2010-04-27 : "singleton" replaced with "scalr" in history output
2010-04-27 : zfactor_bnds are now reverted if needed. 
2010-04-27 : "height" scalar dimension is now defined in the file BEFORE the actual variable (so it looks better on an ncdump)
2010-04-27 : "converted type to" was written only to the the last variable (multiple times) instead of the correct variable(s)
2010-04-21 : fixed appendix in doc to reflect newest values of include files
2010-04-21 : fixed ippc_test_code.f90 that somehow stayed CMOR1 for the most part
2010-04-15 : reverted axes did not result in flipping data!
2010-04-02 : updated all examples FORTRAN, C and Python to run with newer tables
2010-04-02 : allowed user to pass 1D bounds for time in cmor.write in Python, automagically converts to 2D
2010-04-02 : updated tables
2010-04-02 : contact is now required (that might change...)
2010-04-02 : removed a test that was wrong and was allowing to define variable with wrong dimension (as long as axis (T) attribute matched)
2010-04-01 : fixed associated_files attribute, the file names are now constructed correctly
2010-03-31 : non_standard calendar must have "non_standard" as calendar name
2010-03-25 : value of forcing is now checked and returns a CRITICAL_ERROR if wrong
2010-03-25 : added parent_Experiment to list of required_global attributes in table
2010-03-24 : fixed a bug when user was declaring multiple zfactor with same name
2010-03-24 : fixed issue for alternate hybrid level being stored as infinite
2010-03-22 : fixed configure with  Jamie's patch
2010-03-22 : fixed alternate_hybrid_sigma code thx to Joerg for spotting the bug
2010-03-22 : fixed a bug in definition of alternate_hybrid_sigma in tables
2010-03-19 : fixed bug when starting from appending file, wasn't reseting the "last_time" written, this caused error when writing time values less than the default -999
2010-03-19 : fixed configure to always add -lm since it wans't added in case of NetCDF3 libary use
2010-03-16 : cleaned test_sophie , some int wasn't intialized
2010-03-16 : Python interface now checks that the data passed somewhat check the expected shape (ignores 1 length dims)
2010-03-12 : cleaned up configure, thx to Stephen Pascoe
2010-03-12 : works for windows messed up files. But the md5 will probably come out wrong in that case
2010-03-12 : tweaked grid table to remove some attributes
2010-03-12 : check validity of parent_experiment_id
2010-03-09 : Now accepting "generic" exp_ids ending with YYYYMMDDHH
2010-03-09 : Storing md5 for Tables used by user, this should help detecting "tweaking of tables"
2010-03-04 : 'rip' convention is now in place no matter if physics_method and _nitialisation_method' are passed or not
2010-03-04 : file suffix no longer allowed for table made for cmor 2.0 and up
2010-03-04 : associated_files attribute is now smart enough to use areacell/volumcell in agreement with cell_measures attribute
2010-03-04 : appending to file fixed, was broken becasue of new DRS
2010-03-04 : axis flipping no checks first vs last values not just first and second, in case we have a bunch of 0. to start.
2010-02-23 : if a critical error happens during cmor_write or cmor_close_variable cleans up the file it was trying to produce
2010-02-23 : cleans up cvalues if they were malloced
2010-02-22 : links against either NetCDF4 or NetCDF3
2010-02-19 : if ref variable defines "positive" and user does not pass it to cmor_variable, changed from WARNING to CRITICAL error[:]
2010-02-19 : checking that "output" directory is indeed a directory and that you have read/write permissions to it
2010-02-19 : added more experiement ids to tables
2010-02-19 : added a note in install file about not mixing 32bit and 64bit compilers (mac transition to 10.6)
2010-02-18 : fixed a bug with variable not being completely cleared after closing/setup.
2010-02-18 : added possibility of "cell_measures" attribute.
2010-02-18 : fixed MAJOR bug with grids, all reference tables were mixed, it was a miracle it even worked on examples.
2010-02-17 : added Tables/CMIP5_grids file that contains "irregular" grid informations
2010-02-17 : fixed bug when comparing exp_id with the ones in the table
2010-02-17 : fixed "must have bounds check" was returning an error when user was sending time values via axis definition.
2010-02-17 : do not store "positive" attribute on variables any longer.
2010-02-16 : fixed tables_generator and updated tables
2010-02-09 : cleaned-up table genrators add_dims2.txt
2010-02-09 : for "region" (char) coordinates, now recognizes "coords_attrib" table definiton which defines name of the coordinate variable (still geo_'coord' if not defined)
2010-02-01 : removed warnings in _cmormodule.c
2010-02-01 : fixed error in cf3hr table
2010-02-01 : fixed a small leak in python wrapper
2010-02-01 : added some python example to the test suite
2010-01-28 : fixed add_dims.txt (hybrid stuff) tables
2010-01-28 : zfactors can now reference to axis values in formula
2010-01-20 : fixed tables generator. Dims are not repeated anymore. fixed "climatology" keyword for dime time2
2010-01-17 : add "eq" unit to udunits2 not convertible to anything, but won't die when reading in from tables
2010-01-15 : newer table containing ocean sigma coords and some updtes from Karl
2010-01-06 : added option to turn off coloring : --disable-color
2010-01-05 : reset default values for shuffle/deflate/defalte_level to 0 (can be changed via table)
2010-01-05 : fixed table generator to replace zlevel with appropriate alevel or olevel
2010-01-05 : added colors to output to easily spot error and warnings
2010-01-04 : added traceback through C calls
2009-12-22 : model_id can now contain any character BUT they will be converted to "-" in directory structure
2009-12-22 : exposed cmor_set_cur_dataset_attribute
2009-12-22 : newer set of tables
2009-12-22 : documented above changes into CMOR users guide
2009-11-25 : updated acknowledgment
2009-11-25 : history is not copied over multiple times any longer
2009-11-25 : CMOR checker now checks for file directory structure
2009-11-23 : updated documentation to reflect nvertices argument to Fortran and python. Also added this optional arg to python
2009-11-23 : fixed bug for python wrapper that had the missing_value converted to the wrong type
2009-11-22 : preserve mode fixed (can't know the name of the final file until closing, it now checks then as well)
2009-11-22 : time varying grids are now accepted, see cmor_time_varying_grid_coordinate new function
2009-11-22 : put back in use of nc-config at build time, which should allow for misc builds of netcdf
2009-11-10 : allowed fortran to write fixed field (no time) w/o passing ntimes_passed=0
2009-11-10 : now catching grid defined with time varying axes, not allowed at the moment
2009-11-10 : fixed bug spoted by Kostas, when zfactor axis was created w/o bounds extra attributes were added to the previous dimension
2009-11-10 : improved error messages when incompatible units in cmor_axes and cmor_variables
2009-11-09 : updated python interface's keywords for cmor.variable: axes is now axis_ids and missing is now missing_value, this make it the same as C and Fortran versions
2009-11-05 : unique id generated by uuid is now different fr each file (instead of being the same for every var generated nder a call to cmor_dataset). Appending to files will now change the tracking_id (uuid) number
2009-11-05 : cmor_create_output_directory now return 1 in C only if the variable is a fixed frequency, no changes for Fortran and Python
2009-11-05 : 30min frequency renamed "subhr"
2009-11-05 : examples adapted to reflect new directory/names structure
2009-11-05 : "output" directory added to directory structure between "project_id" and "institution_id" dirs, to prepare for future "derived" products
2009-11-05 : Newer CMOR tables
2009-11-05 : fixed fields are stored under realization "0" no matter which realization number is passed
2009-11-05 : "fixed" is now "fx"
2009-11-05 : removed area from cmor_grid, it is now supposed to be stored in a separate file
2009-11-05 : updated "associated_files" to point to the gridspec/cellArea/cellVolume files + baseURL instead of "self"
2009-10-20 : fixed paramters type for fortran they used to be real where integer was needed
2009-10-15 : Patch from Jamie Kettleborough that fixes a bug in cmor.write that was returning incomplete bounds
2009-08-25 : Fixed a bug with cell_method that would always add interval even if user did not pass it.
2009-08-25 : Updated documenation of cmor_write to reflect the cell_method order difference in Fortran vs C/Python
2009-08-25 : fixed a bug with python interface when passing 1 time slice bounds only.
2009-08-25 : nc-config flags are different from 1 version unitl another, so until it is stabalized, commented code out
2009-08-25 : Fixed a typo in doc of cmor_setup
2009-08-24 : Tagged as release candidate 3
2009-08-24 : Fixed a bug with realms being mangled with memory while construcitng path, added jamie's test for it
2009-08-24 : Edited configure.ac to take advantage of nc-config if present
2009-08-24 : Added this file RELEASES-NOTES