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/*
//
// Copyright 1997-2010 Torsten Rohlfing
//
// Copyright 2004-2011 SRI International
//
// This file is part of the Computational Morphometry Toolkit.
//
// http://www.nitrc.org/projects/cmtk/
//
// The Computational Morphometry Toolkit is free software: you can
// redistribute it and/or modify it under the terms of the GNU General Public
// License as published by the Free Software Foundation, either version 3 of
// the License, or (at your option) any later version.
//
// The Computational Morphometry Toolkit is distributed in the hope that it
// will be useful, but WITHOUT ANY WARRANTY; without even the implied
// warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License along
// with the Computational Morphometry Toolkit. If not, see
// <http://www.gnu.org/licenses/>.
//
// $Revision: 5436 $
//
// $LastChangedDate: 2018-12-10 19:01:20 -0800 (Mon, 10 Dec 2018) $
//
// $LastChangedBy: torstenrohlfing $
//
*/
#ifndef __cmtkSimpleLevelsetCommandLineBase_h_included_
#define __cmtkSimpleLevelsetCommandLineBase_h_included_
#include <cmtkconfig.h>
#include <Segmentation/cmtkSimpleLevelset.h>
#include <System/cmtkCommandLine.h>
namespace
cmtk
{
/** \addtogroup Segmentation */
//@{
/** Command line interface base class for simple levelset segmentation.
*/
class SimpleLevelsetCommandLineBase
{
public:
/// This class.
typedef SimpleLevelsetCommandLineBase Self;
/// Default constructor.
SimpleLevelsetCommandLineBase();
/// Initialize from command line arguments.
int Init( const int argc, const char* argv[] );
/// Reference to command line object.
CommandLine& GetCommandLine()
{
return this->m_CommandLine;
}
protected:
/// Initial sphere scale factor.
Types::Coordinate m_ScaleInitialSphere;
/// Gaussian smoothing kernel sigma in mm.
Types::Coordinate m_FilterSigma;
/// Levelset evolution time constant.
Types::Coordinate m_TimeDelta;
/// Levelset threshold: the levelset function is truncated to plus/minus this value at each iteration.
Types::Coordinate m_LevelsetThreshold;
/// Number of levelset evolution iterations.
int m_NumberOfIterations;
/// Flag to force given number of iterations even when premature (discrete) convergence is detected.
bool m_ForceIterations;
/// Binarize levelset before output.
bool m_Binarize;
/// Input image path.
std::string m_InFile;
/// Output image path.
std::string m_OutFile;
/// The input image volume.
UniformVolume::SmartConstPtr m_Volume;
#ifdef CMTK_USE_SQLITE
/// Update this image/transformation database with the newly created levelset image.
const char* m_UpdateDB;
#endif
private:
/// The command line parser object.
cmtk::CommandLine m_CommandLine;
};
} // namespace cmtk
#endif // #ifndef __cmtkSimpleLevelsetCommandLineBase_h_included_
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