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/*
//
// Copyright 1997-2009 Torsten Rohlfing
//
// Copyright 2004-2013 SRI International
//
// This file is part of the Computational Morphometry Toolkit.
//
// http://www.nitrc.org/projects/cmtk/
//
// The Computational Morphometry Toolkit is free software: you can
// redistribute it and/or modify it under the terms of the GNU General Public
// License as published by the Free Software Foundation, either version 3 of
// the License, or (at your option) any later version.
//
// The Computational Morphometry Toolkit is distributed in the hope that it
// will be useful, but WITHOUT ANY WARRANTY; without even the implied
// warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License along
// with the Computational Morphometry Toolkit. If not, see
// <http://www.gnu.org/licenses/>.
//
// $Revision: 5436 $
//
// $LastChangedDate: 2018-12-10 19:01:20 -0800 (Mon, 10 Dec 2018) $
//
// $LastChangedBy: torstenrohlfing $
//
*/
#include "cmtkClassStreamStudyList.h"
#include <System/cmtkMountPoints.h>
#include <IO/cmtkClassStreamOutput.h>
#include <IO/cmtkClassStreamAffineXform.h>
namespace
cmtk
{
/** \addtogroup IO */
//@{
void
ClassStreamStudyList::Write
( const std::string& path, const StudyList* studyList )
{
ClassStreamOutput stream;
stream.Open( path, "studylist", ClassStreamOutput::MODE_WRITE );
if ( stream.IsValid() )
{
StudyList::const_iterator it = studyList->begin();
while ( it != studyList->end() )
{
stream.Begin( "source" );
stream.WriteString( "studyname", it->first->GetFileSystemPath() );
stream.End();
++it;
}
stream.Close();
}
else
{
StdErr << "ERROR: could not open archive " << path << "/studylist\n";
}
stream.Open( path, "registration", ClassStreamOutput::MODE_WRITE_ZLIB );
if ( stream.IsValid() )
{
StudyList::const_iterator it = studyList->begin();
while ( it != studyList->end() )
{
StudyToXform targetList = it->second;
std::map<Study::SmartPtr,bool> seen;
StudyToXform::const_iterator tit;
for ( tit = targetList.begin(); tit != targetList.end(); ++tit )
{
if ( seen.find( tit->first ) == seen.end() )
{
seen[tit->first] = true;
stream.Begin( "registration" );
stream.WriteString( "reference_study", it->first->GetFileSystemPath() );
stream.WriteString( "floating_study", tit->first->GetFileSystemPath() );
StudyToXform::const_iterator tit2;
for ( tit2 = targetList.begin(); tit2 != targetList.end(); ++tit2 )
{
if ( tit2->first == tit->first )
{
Xform::SmartPtr xform = tit2->second;
AffineXform::SmartPtr affine = AffineXform::SmartPtr::DynamicCastFrom( xform );
if ( affine )
{
stream << (*affine);
}
WarpXform::SmartPtr warp = WarpXform::SmartPtr::DynamicCastFrom( xform );
if ( warp )
{
stream << warp;
}
}
}
stream.End();
}
}
++it;
}
stream.Close();
}
else
{
StdErr << "ERROR: could not open archive " << path << "/registration\n";
}
}
} // namespace cmtk
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