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/*
//
// Copyright 2004-2012 SRI International
//
// Copyright 1997-2009 Torsten Rohlfing
//
// This file is part of the Computational Morphometry Toolkit.
//
// http://www.nitrc.org/projects/cmtk/
//
// The Computational Morphometry Toolkit is free software: you can
// redistribute it and/or modify it under the terms of the GNU General Public
// License as published by the Free Software Foundation, either version 3 of
// the License, or (at your option) any later version.
//
// The Computational Morphometry Toolkit is distributed in the hope that it
// will be useful, but WITHOUT ANY WARRANTY; without even the implied
// warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License along
// with the Computational Morphometry Toolkit. If not, see
// <http://www.gnu.org/licenses/>.
//
// $Revision: 5436 $
//
// $LastChangedDate: 2018-12-10 19:01:20 -0800 (Mon, 10 Dec 2018) $
//
// $LastChangedBy: torstenrohlfing $
//
*/
#ifndef __cmtkVolumeFromFile_h_included_
#define __cmtkVolumeFromFile_h_included_
#include <cmtkconfig.h>
#include <Base/cmtkUniformVolume.h>
#include <System/cmtkException.h>
namespace
cmtk
{
/** \addtogroup IO */
//@{
/** Class to read uniform volume from disk file(s).
*/
class VolumeFromFile
{
public:
/// Read volume from file automatically.
static const UniformVolume::SmartPtr Read( const std::string& filename );
#ifdef CMTK_USE_DCMTK
/// Read volume in multi-slice DICOM format.
static const UniformVolume::SmartPtr ReadDICOM( const std::string& filename );
#else
static const UniformVolume::SmartPtr ReadDICOM( const std::string& )
{
throw Exception( "Library was configured without DICOM support." );
}
#endif
/// Read volume in Vanderbilt format.
static const UniformVolume::SmartPtr ReadVanderbilt( const std::string& filename );
/// Read BioRad PIC file (confocal microscopy image).
static const UniformVolume::SmartPtr ReadBioRad( const std::string& path );
/// Read Analyze 7.5 file (separate header file).
static const UniformVolume::SmartPtr ReadAnalyzeHdr( const std::string& pathHdr, const bool bigEndian = false, const bool readData = true );
/// Read Nifti file.
static const UniformVolume::SmartPtr ReadNifti( const std::string& pathHdr, const bool detached, const bool readData = true );
/// Write Analyze 7.5 file (separate header file).
static void WriteAnalyzeHdr( const std::string& pathHdr, const UniformVolume& volume );
/// Write Nifti file.
static void WriteNifti( const std::string& pathImg, const UniformVolume& volume );
/// Write MetaImage file.
static void WriteMetaImage( const std::string& pathHdr, const UniformVolume& volume );
#ifdef CMTK_BUILD_NRRD
/// Read NRRD file.
static const UniformVolume::SmartPtr ReadNRRD( const std::string& path );
/// Write NRRD file.
static void WriteNRRD( const std::string& pathHdr, const UniformVolume& volume );
#else
/// Read NRRD file.
static const UniformVolume::SmartPtr ReadNRRD( const std::string& )
{
throw Exception( "Library was configured without Nrrd support." );
}
/// Write NRRD file.
static void WriteNRRD( const std::string&, const UniformVolume&, const bool = false )
{
throw Exception( "Library was configured without Nrrd support." );
}
#endif
};
//@}
} // namespace cmtk
#endif // #ifndef __cmtkVolumeFromFile_h_included_
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