1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
|
/*
//
// Copyright 1997-2009 Torsten Rohlfing
//
// Copyright 2004-2013 SRI International
//
// This file is part of the Computational Morphometry Toolkit.
//
// http://www.nitrc.org/projects/cmtk/
//
// The Computational Morphometry Toolkit is free software: you can
// redistribute it and/or modify it under the terms of the GNU General Public
// License as published by the Free Software Foundation, either version 3 of
// the License, or (at your option) any later version.
//
// The Computational Morphometry Toolkit is distributed in the hope that it
// will be useful, but WITHOUT ANY WARRANTY; without even the implied
// warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License along
// with the Computational Morphometry Toolkit. If not, see
// <http://www.gnu.org/licenses/>.
//
// $Revision: 5436 $
//
// $LastChangedDate: 2018-12-10 19:01:20 -0800 (Mon, 10 Dec 2018) $
//
// $LastChangedBy: torstenrohlfing $
//
*/
#include "cmtkThreads.h"
// GJ: use sysctl library to query cpu number on apple macosx
#ifdef __APPLE__
#include <sys/sysctl.h>
#endif
#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif
#ifdef CMTK_USE_PTHREADS
# include <pthread.h>
# include <errno.h>
#endif
#ifdef _OPENMP
# include <omp.h>
#endif // _OPENMP
#if defined(_OPENMP) && defined(__APPLE__)
#include <pthread.h>
__attribute__((visibility("hidden"))) pthread_attr_t gomp_thread_attr;
#endif
#include <limits.h>
#include <stdlib.h>
#include <iostream>
#include <algorithm>
#ifdef CMTK_USE_GCD
# include <dispatch/dispatch.h>
#endif
#ifndef _SC_NPROCESSORS_ONLN
# ifdef _SC_NPROC_ONLN
# define _SC_NPROCESSORS_ONLN _SC_NPROC_ONLN
# endif
#endif
#ifdef CMTK_USE_FFTW_FOUND
# include <System/cmtkFFTW.h>
#endif
namespace
cmtk
{
/** \addtogroup System */
//@{
int Threads::NumberOfThreads = 0;
int
Threads::GetNumberOfThreads()
{
if ( !Threads::NumberOfThreads )
Threads::CheckEnvironment();
return Threads::NumberOfThreads;
}
void
Threads::SetNumberOfThreads( const long int numberOfThreads )
{
Threads::SetNumberOfThreads( numberOfThreads, true /*force*/ );
}
int
Threads
::SetNumberOfThreads
( const int numberOfThreads, const bool force )
{
if ( numberOfThreads )
{
if ( force )
{
NumberOfThreads = std::min( numberOfThreads, Threads::GetMaxThreads() );
}
else
{
NumberOfThreads = std::min( numberOfThreads, Threads::GetNumberOfProcessors() );
}
}
else
NumberOfThreads = std::min( Threads::GetNumberOfProcessors(), Threads::GetMaxThreads() );
#ifdef _OPENMP
omp_set_num_threads( NumberOfThreads );
#endif
return NumberOfThreads;
}
int
Threads::GetMaxThreads()
{
#ifdef _MSC_VER
return CMTK_MAX_THREADS;
# elif defined(_POSIX_THREAD_THREADS_MAX)
return _POSIX_THREAD_THREADS_MAX;
# elif defined(PTHREAD_THREADS_MAX)
return PTHREAD_THREADS_MAX;
// GJ added extra elif for Apple
// not sure if this max is sensible, but can't find
// anywhere to query it
#elif defined(__APPLE__) && defined(CMTK_USE_PTHREADS)
return std::min( CMTK_MAX_THREADS, CMTK_MAX_THREADS );
# elif defined(CMTK_USE_PTHREADS)
const long sysconfNumThreads = sysconf( _SC_THREAD_THREADS_MAX );
if ( sysconfNumThreads == -1 )
return CMTK_MAX_THREADS;
else
return std::min( (int)sysconfNumThreads, CMTK_MAX_THREADS );
# else
return 1;
# endif
}
int
Threads::GetNumberOfProcessors()
{
#ifdef _MSC_VER
SYSTEM_INFO systemInfo;
GetSystemInfo( &systemInfo );
return std::min<int>( systemInfo.dwNumberOfProcessors, CMTK_MAX_THREADS );
#elif defined(__APPLE__)
// use sysctl to get number of available cpus on apple. Copied from:
// developer.apple.com/documentation/Porting/Conceptual/PortingUnix/index.html
const char *name="hw.activecpu";
int nproc; size_t len=4;
sysctlbyname(name, &nproc, &len, NULL, 0);
return nproc;
#elif defined(CMTK_USE_PTHREADS)
return sysconf( _SC_NPROCESSORS_ONLN );
#else
return 1;
#endif
}
#ifdef CMTK_USE_GCD
void
Threads::RunThreads
( ThreadFunction threadCall, const unsigned numberOfThreads, void *const parameters, const size_t parameterSize )
{
dispatch_apply( numberOfThreads, dispatch_get_global_queue(0, 0), ^(size_t i) { threadCall( ((char*)parameters)+i*parameterSize ); } );
}
#else
void
Threads::RunThreads
( ThreadFunction threadCall, const unsigned numberOfThreads, void *const parameters, const size_t parameterSize )
{
#ifdef _OPENMP
const int nThreadsOMP = std::max<int>( 1, 1+GetNumberOfThreads()-numberOfThreads );
omp_set_num_threads( nThreadsOMP );
#endif
#ifdef CMTK_USE_SMP
ThreadIDType Thread[CMTK_MAX_THREADS];
#ifdef _MSC_VER
HANDLE ThreadHandles[CMTK_MAX_THREADS];
#endif
#endif
#ifdef CMTK_USE_PTHREADS
pthread_attr_t attr;
pthread_attr_init(&attr);
pthread_attr_setscope(&attr, PTHREAD_SCOPE_SYSTEM);
#endif
for ( unsigned threadIdx = 1; threadIdx < numberOfThreads; ++threadIdx )
{
void *threadParameters = ((char*) parameters) + threadIdx * parameterSize;
// nothing happened yet, so set status to OK
int status = 0;
// We do NOT run the last thread as a thread, but rather continue the
// main thread. This should allow us to compute the actual real time
// spent on the longest thread, at least approximately.
#ifdef CMTK_USE_SMP
#ifdef _MSC_VER
ThreadHandles[threadIdx] = CreateThread( NULL /*default security attributes*/, 0/*use default stack size*/, (LPTHREAD_START_ROUTINE) threadCall, threadParameters, 0/*use default creation flags*/, &Thread[threadIdx] );
if ( ThreadHandles[threadIdx] == NULL )
{
status = -1;
}
#else // _MSC_VER
status = pthread_create( &Thread[threadIdx], &attr, threadCall, threadParameters );
#endif // _MSC_VER
#else
// we're not actually using SMP, so simply run everything "by hand".
threadCall( threadParameters );
// this should never fail really
#endif
if ( status )
{
fprintf( stderr, "Creation of thread #%u failed with status %d.\n", threadIdx, status );
#if defined(CMTK_USE_SMP) && defined(CMTK_USE_PTHREADS)
Thread[threadIdx] = 0;
#endif
threadCall( threadParameters );
}
}
// Run thread #0
threadCall( parameters );
// Collect thread results in reverse order. Threads with higher numbers are
// likely to have to do an iteration less than those with lower numbers.
// So we collect the shorter running ones first and give more time to the
// longer running ones while dealing with the administrational overhead of
// the ones that are already finished.
for ( unsigned threadIdx = numberOfThreads-1; threadIdx; --threadIdx )
{
#ifdef CMTK_USE_SMP
# ifdef _MSC_VER
WaitForSingleObject( ThreadHandles[threadIdx], INFINITE /*no timeout*/ );
# else // _MSC_VER
void *resultThread;
if ( Thread[threadIdx] )
{
pthread_join( Thread[threadIdx], &resultThread );
}
# endif // _MSC_VER
#endif
}
#ifdef CMTK_USE_SMP
#ifndef _MSC_VER
pthread_attr_destroy(&attr);
#endif
#endif
#ifdef _OPENMP
omp_set_num_threads( GetNumberOfThreads() );
#endif
}
#endif // CMTK_USE_GCD
void
Threads::CheckEnvironment()
{
const char *env = getenv( "CMTK_NUM_THREADS" );
// check legacy variable
if ( ! env )
env = getenv( "IGS_NUM_THREADS" );
if ( env )
{
const int numThreads = atoi( env );
if ( numThreads )
{
SetNumberOfThreads( numThreads );
// cannot use StdErr here, because it may not be initialized yet
std::cerr << "INFO: number of threads set to " << numThreads << " according to environment variable CMTK_NUM_THREADS\n";
}
else
{
// cannot use StdErr here, because it may not be initialized yet
std::cerr << "WARNING: environment variable CMTK_NUM_THREADS is set but does not seem to contain a number larger than 0.\n";
}
}
if ( ! NumberOfThreads )
{
SetNumberOfThreads( std::min( Threads::GetNumberOfProcessors(), Threads::GetMaxThreads() ) );
}
#ifdef CMTK_USE_FFTW_FOUND
FFTW::GetStatic().SetNumberOfThreads( Threads::GetNumberOfThreads() );
#endif
#ifdef _OPENMP
// this is to force Apple's gcc on MacOS to link all OpenMP libraries
#pragma omp parallel
{}
#endif
}
//@}
} // namespace cmtk
|