File: triplanarTestDriver.sh

package info (click to toggle)
cmtk 3.3.1p2%2Bdfsg-4
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 10,524 kB
  • sloc: cpp: 87,098; ansic: 23,347; sh: 3,896; xml: 1,551; perl: 707; makefile: 334
file content (174 lines) | stat: -rw-r--r-- 4,470 bytes parent folder | download | duplicates (8)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
#!/bin/sh

##
##  Copyright 1997-2009 Torsten Rohlfing
##  Copyright 2004-2009 SRI International
##
##  This file is part of the Computational Morphometry Toolkit.
##
##  http://www.nitrc.org/projects/cmtk/
##
##  The Computational Morphometry Toolkit is free software: you can
##  redistribute it and/or modify it under the terms of the GNU General Public
##  License as published by the Free Software Foundation, either version 3 of
##  the License, or (at your option) any later version.
##
##  The Computational Morphometry Toolkit is distributed in the hope that it
##  will be useful, but WITHOUT ANY WARRANTY; without even the implied
##  warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
##  GNU General Public License for more details.
##
##  You should have received a copy of the GNU General Public License along
##  with the Computational Morphometry Toolkit.  If not, see
##  <http://www.gnu.org/licenses/>.
##
##  $Revision: 918 $
##
##  $LastChangedDate: 2009-11-30 13:18:53 -0800 (Mon, 30 Nov 2009) $
##
##  $LastChangedBy: torstenrohlfing $
##

BUILDNAME=$1
BINDIR=$2
DATADIR=$3
RUNTEST=$4

HOSTNAME=`uname -n`
tmpdir=${BINDIR}/../testing/temporary/${HOSTNAME}/${RUNTEST}
mkdir -p ${tmpdir}

BASELINE=${DATADIR}/testing/baseline/${RUNTEST}
if [ -d ${DATADIR}/testing/baseline/${BUILDNAME}/${RUNTEST} ]; then
    BASELINE=${DATADIR}/testing/${BUILDNAME}/${RUNTEST}
fi

cd ${DATADIR}/testing/inputs

run()
{
    cmd=$*

    echo "cd $PWD; $cmd"
    if $cmd; then
	return
    else
	exit 1
    fi
}

run_eval()
{
    cmd=$*

    echo "cd $PWD; $cmd"
    if eval "$cmd"; then
	return
    else
	exit 1
    fi
}

get_unzipped()
{
    if test -f ${1}.gz; then
	tmp=`mktemp`
	gzip -cd ${1}.gz > ${tmp}
	echo ${tmp}
    else
	echo ${1}
    fi
}

check_result()
{
    baseline=`get_unzipped ${BASELINE}/$1`
    result=`get_unzipped ${tmpdir}/$1`

    if test ! -f ${result}; then
	echo "Results file ${result} does not exist"
	exit 1
    fi

    if test ! -f ${baseline}; then
	echo "Baseline file ${baseline} does not exist"
	exit 1
    fi

    echo "diff ${BASELINE}/$1 ${tmpdir}/$1"
    if diff $result $baseline; then
	return
    else
	exit 1
    fi
}

check_results()
{
    for r in $*; do
	check_result $r
    done
}

case ${RUNTEST} in
    triplanarDefault)
	run ${BINDIR}/triplanar --exec load pat001_pet.hdr export-panel ${tmpdir}/panel.ppm export-axial ${tmpdir}/axial.ppm export-coronal ${tmpdir}/coronal.ppm export-sagittal ${tmpdir}/sagittal.ppm
	for img in panel axial sagittal coronal; do
	    if check_result ${img}.ppm; then
		echo $img ok.
	    else
		exit $?
	    fi
	done
	;;
    triplanarZoom300)
	run ${BINDIR}/triplanar --exec load pat001_pet.hdr zoom 300 export-panel ${tmpdir}/panel.ppm
	check_result panel.ppm
	;;
    triplanarZoom25)
	run ${BINDIR}/triplanar --exec load pat001_pet.hdr zoom 25 export-panel ${tmpdir}/panel.ppm
	check_result panel.ppm
	;;
    triplanarSetPixelWindowLevel)
	run ${BINDIR}/triplanar --exec load pat002_ct.hdr crosshair off goto-pixel 32,20,0 window-level 500:0 export-panel ${tmpdir}/panel.ppm
	check_result panel.ppm
	;;
    triplanarColormaps)
	run ${BINDIR}/triplanar --exec load parc1.hdr crosshair off window-level 116:58 colormap Labels export-axial ${tmpdir}/labels.ppm colormap Red export-axial ${tmpdir}/red.ppm colormap Rainbow export-axial ${tmpdir}/rainbow.ppm
	for img in labels red rainbow; do
	    if check_result ${img}.ppm; then
		echo $img ok.
	    else
		exit $?
	    fi
	done
	;;
    triplanarPhantomAx)
	run ${BINDIR}/triplanar --exec load phantom_ax.hdr crosshair off export-panel ${tmpdir}/panel.ppm
	check_result panel.ppm
	;;
    triplanarPhantomSa)
	run ${BINDIR}/triplanar --exec load phantom_sa.hdr crosshair off export-panel ${tmpdir}/panel.ppm
	check_result panel.ppm
	;;
    triplanarPhantomCo)
	run ${BINDIR}/triplanar --exec load phantom_co.hdr crosshair off export-panel ${tmpdir}/panel.ppm
	check_result panel.ppm
	;;
    triplanarPhantomAxNrrd)
	run ${BINDIR}/triplanar --exec load phantom_ax.nhdr crosshair off export-panel ${tmpdir}/panel.ppm
	check_result panel.ppm
	;;
    triplanarPhantomSaNrrd)
	run ${BINDIR}/triplanar --exec load phantom_sa.nhdr crosshair off export-panel ${tmpdir}/panel.ppm
	check_result panel.ppm
	;;
    triplanarPhantomCoNrrd)
	run ${BINDIR}/triplanar --exec load phantom_co.nhdr crosshair off export-panel ${tmpdir}/panel.ppm
	check_result panel.ppm
	;;
esac

if [ "${tmpdir}" != "" ]; then
    rm -rf ${tmpdir}
fi