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FROM continuumio/miniconda3:23.10.0-1
MAINTAINER Eric Talevich <52723+etal@users.noreply.github.com>
# Install directly into 'base' conda environment
COPY conda-env.yml ./conda-env.yml
RUN conda env update -v -n base -f conda-env.yml
RUN conda clean --all --verbose
RUN pip3 install cnvkit==0.9.11 --no-cache
# Let matplotlib build its font cache
RUN cnvkit.py version
COPY scripts/* /opt/conda/bin
## USER CONFIGURATION, containers should not run as root
RUN adduser --disabled-password --gecos '' ubuntu && chsh -s /bin/bash && mkdir -p /home/ubuntu
USER ubuntu
WORKDIR /home/ubuntu
CMD ["bash"]
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