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Source: cnvkit
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@debian.org>,
Steffen Moeller <moeller@debian.org>,
Olivier Sallou <osallou@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
python3-all,
python3-setuptools,
pybuild-plugin-pyproject,
python3-pytest <!nocheck>,
python3-pyfaidx <!nocheck>,
python3-biopython <!nocheck>,
python3-pandas <!nocheck>,
python3-numpy <!nocheck>,
python3-pysam <!nocheck>,
python3-scipy <!nocheck>,
python3-matplotlib <!nocheck>,
python3-pomegranate (>= 0.15) <!nocheck>,
r-bioc-dnacopy <!nocheck>,
# testing
# poppler-utils provides pdfunite, needed for the tests
poppler-utils <!nocheck>
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/cnvkit
Vcs-Git: https://salsa.debian.org/med-team/cnvkit.git
Homepage: https://cnvkit.readthedocs.org
Rules-Requires-Root: no
Testsuite: autopkgtest-pkg-pybuild
Package: cnvkit
Architecture: all
Depends: ${python3:Depends},
${misc:Depends},
r-bioc-dnacopy
Description: Copy number variant detection from targeted DNA sequencing
A command-line toolkit and Python library for detecting copy number variants
and alterations genome-wide from targeted DNA sequencing. It is designed for
use with hybrid capture, including both whole-exome and custom target panels,
and short-read sequencing platforms such as Illumina and Ion Torrent.
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