File: bintest.makefile

package info (click to toggle)
cnvkit 0.9.12-1
  • links: PTS, VCS
  • area: main
  • in suites: sid, trixie
  • size: 96,464 kB
  • sloc: python: 12,407; makefile: 263; sh: 84; xml: 38
file content (15 lines) | stat: -rw-r--r-- 483 bytes parent folder | download | duplicates (3) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
 
# bin-level testing
# Pick up from clustering .cnr results

cnr_of_interest=TR_101.clustered.cnr TR_77.clustered.cnr TR_55.clustered.cnr TR_42.clustered.cnr
cns_of_interest=$(cnr_of_interest:.cnr=.cns)
# TR_101.clustered.cnr TR_77.clustered.cnr TR_55.clustered.cnr TR_42.clustered.cnr
out_cns=$(cnr_of_interest:.cnr=.bintest.cns)

all: $(out_cns)

$(out_cns): %.bintest.cns: %.cns %.cnr
	cnvkit.py bintest -s $^ -t -o $@

$(cns_of_interest): %.cns: %.cnr
	cnvkit.py segment $< -o $@