1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
|
#! /bin/sh
#!perl -w # --*- Perl -*--
eval 'exec perl -x $0 ${1+"$@"}'
if 0;
#------------------------------------------------------------------------------
#$Author: antanas $
#$Revision: 5467 $
#$URL: svn://www.crystallography.net/cod-tools/tags/v2.3/scripts/msg_parse $
#$Date: 2017-07-18 18:16:38 +0300 (An, 18 liep. 2017) $
#$Id: cif_diff 3294 2015-04-22 10:12:45Z andrius $
#------------------------------------------------------------------------------
#*
#* Parse COD error messages and output the results in the desired format.
#*
#* USAGE:
#* $0 --options input1.cif input*.cif
#**
use strict;
use warnings;
use COD::SOptions qw( getOptions );
use COD::SUsage qw( usage options );
use COD::UserMessage qw( parse_message note );
use COD::ToolsVersion;
my $ignore_comments = 0;
my @dsv_print_order = ( qw(
program
filename
line_no
column_no
add_pos
err_level
message
) );
my $print_options = {
'format' => 'dsv',
'delimiter' => "\t",
'dsv_order' => \@dsv_print_order
};
#* OPTIONS:
#* -d, --delimiter "\t"
#* Delimiter that is used to separate fields in the
#* delimiter-separated values (dsv) output format
#* (default "\t").
#* --dsv
#* Output results in delimiter-separated values (dsv)
#* format (default).
#* --ignore-comments
#* Ignore lines starting with a number symbol ('#').
#* --process-comments
#* Treat lines starting with a number symbol ('#') as
#* error messages (default).
#* --help, --usage
#* Output a short usage message (this message) and exit.
#* --version
#* Output version information and exit.
#**
@ARGV = getOptions(
"-d,--delimiter" => \$print_options->{delimiter},
"--dsv" => sub { $print_options->{format} = 'dsv' },
"--ignore-comments" => sub { $ignore_comments = 1 },
"--process-comments" => sub { $ignore_comments = 0 },
"--options" => sub { options; exit },
"--help,--usage" => sub { usage; exit },
'--version' => sub { print 'cod-tools version ',
$COD::ToolsVersion::Version, "\n";
exit }
);
my $msg;
while (<>) {
next if $ignore_comments && $_ =~ /^\s*#/ ;
if ( !defined $msg ) {
$msg = $_;
} elsif ( /^ / && $msg =~ /[^ ].*:\s*$/m) {
$msg .= $_;
} else {
print_parsed_msg($msg, $print_options);
$msg = $_;
}
if (eof) {
print_parsed_msg($msg, $print_options);
}
}
sub print_parsed_msg
{
my ($msg, $options) = @_;
my $format = $options->{format};
my $delim = $options->{delimiter};
my $order = $options->{dsv_order};
my $parsed_msg = parse_message( $msg );
if ( defined $parsed_msg ) {
if ( $format eq 'dsv' ) {
print join $delim, map { ( defined $parsed_msg->{$_} ) ?
$parsed_msg->{$_} :
'' } @{$order};
if ( defined $parsed_msg->{line_content} ) {
print "\t\n$parsed_msg->{line_content}"
} else {
print "\n";
};
}
} else {
chomp($msg);
note($0, $ARGV, undef, "unable to parse error message '$msg'", undef);
}
return;
};
|
