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scripts/dic2markdown: tests/cases/dic2markdown_004.inp: WARNING, apparently DDL dictionary was encountered, converting it to DDLm; the conversion is experimental and may result in corruption or loss of dictionary data.
# cif\_core.dic
Version: 2.4 (2008-03-10)
## <a name="ATOM_SITE"></a>ATOM\_SITE
Data items in the ATOM\_SITE category record details about
the atom sites in a crystal structure, such as the positional
coordinates, atomic displacement parameters, and magnetic moments
and directions.
### <a name="_atom_site_adp_type"></a>\_atom\_site\_adp\_type
A standard code used to describe the type of atomic displacement
parameters used for the site.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>Uani</td><td>anisotropic Uij</td></tr>
<tr><td>Uiso</td><td>isotropic U</td></tr>
<tr><td>Uovl</td><td>overall U</td></tr>
<tr><td>Umpe</td><td>multipole expansion U</td></tr>
<tr><td>Bani</td><td>anisotropic Bij</td></tr>
<tr><td>Biso</td><td>isotropic B</td></tr>
<tr><td>Bovl</td><td>overall B</td></tr>
</table>
### <a name="_atom_site_aniso_B_11"></a>\_atom\_site\_aniso\_B\_11
These are the standard anisotropic atomic displacement
components in angstroms squared which appear in the
structure-factor term
T = exp{-(1/4) sum~i~ [ sum~j~ (B^ij^ h~i~ h~j~ a\*~i~ a\*~j~) ] }
h = the Miller indices
a\* = the reciprocal-space cell lengths
The unique elements of the real symmetric matrix are
entered by row.
The IUCr Commission on Nomenclature recommends against the use
of B for reporting atomic displacement parameters. U, being
directly proportional to B, is preferred.
Units: angstroms squared
### <a name="_atom_site_aniso_label"></a>\_atom\_site\_aniso\_label
Anisotropic atomic displacement parameters are usually looped in
a separate list. If this is the case, this code must match the
\_atom\_site\_label of the associated atom in the atom coordinate
list and conform with the same rules described in
\_atom\_site\_label.
### <a name="_atom_site_aniso_ratio"></a>\_atom\_site\_aniso\_ratio
Ratio of the maximum to minimum principal axes of
displacement (thermal) ellipsoids.
### <a name="_atom_site_aniso_type_symbol"></a>\_atom\_site\_aniso\_type\_symbol
This \_atom\_type\_symbol code links the anisotropic atom
parameters to the atom-type data associated with this site and
must match one of the \_atom\_type\_symbol codes in this list.
### <a name="_atom_site_aniso_U_11"></a>\_atom\_site\_aniso\_U\_11
These are the standard anisotropic atomic displacement
components in angstroms squared which appear in the
structure-factor term
T = exp{-2pi^2^ sum~i~ [sum~j~ (U^ij^ h~i~ h~j~ a\*~i~ a\*~j~) ] }
h = the Miller indices
a\* = the reciprocal-space cell lengths
The unique elements of the real symmetric matrix are
entered by row.
Units: angstroms squared
### <a name="_atom_site_attached_hydrogens"></a>\_atom\_site\_attached\_hydrogens
The number of hydrogen atoms attached to the atom at this site
excluding any hydrogen atoms for which coordinates (measured or
calculated) are given.
### <a name="_atom_site_B_equiv_geom_mean"></a>\_atom\_site\_B\_equiv\_geom\_mean
Equivalent isotropic atomic displacement parameter, B(equiv),
in angstroms squared, calculated as the geometric mean of
the anisotropic atomic displacement parameters.
B(equiv) = (B~i~ B~j~ B~k~)^1/3^
B~n~ = the principal components of the orthogonalized B^ij^
The IUCr Commission on Nomenclature recommends against the use
of B for reporting atomic displacement parameters. U, being
directly proportional to B, is preferred.
Units: angstroms squared
### <a name="_atom_site_B_iso_or_equiv"></a>\_atom\_site\_B\_iso\_or\_equiv
Isotropic atomic displacement parameter, or equivalent isotropic
atomic displacement parameter, B(equiv), in angstroms squared,
calculated from anisotropic displacement components.
B(equiv) = (1/3) sum~i~[sum~j~(B^ij^ a\*~i~ a\*~j~ a~i~ a~j~)]
a = the real-space cell lengths
a\* = the reciprocal-space cell lengths
B^ij^ = 8 pi^2^ U^ij^
Ref: Fischer, R. X. & Tillmanns, E. (1988). Acta Cryst. C44,
775-776.
The IUCr Commission on Nomenclature recommends against the use
of B for reporting atomic displacement parameters. U, being
directly proportional to B, is preferred.
Units: angstroms squared
### <a name="_atom_site_calc_attached_atom"></a>\_atom\_site\_calc\_attached\_atom
The \_atom\_site\_label of the atom site to which the 'geometry-
calculated' atom site is attached.
### <a name="_atom_site_calc_flag"></a>\_atom\_site\_calc\_flag
A standard code to signal whether the site coordinates have been
determined from the intensities or calculated from the geometry
of surrounding sites, or have been assigned dummy coordinates.
The abbreviation 'c' may be used in place of 'calc'.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>d</td><td>determined from diffraction measurements</td></tr>
<tr><td>calc</td><td>calculated from molecular geometry</td></tr>
<tr><td>c</td><td>abbreviation for "calc"</td></tr>
<tr><td>dum</td><td>dummy site with meaningless coordinates</td></tr>
</table>
### <a name="_atom_site_Cartn_x"></a>\_atom\_site\_Cartn\_x
The atom-site coordinates in angstroms specified according to a
set of orthogonal Cartesian axes related to the cell axes as
specified by the \_atom\_sites\_Cartn\_transform\_axes description.
Units: angstroms
### <a name="_atom_site_chemical_conn_number"></a>\_atom\_site\_chemical\_conn\_number
This number links an atom site to the chemical connectivity list.
It must match a number specified by \_chemical\_conn\_atom\_number.
### <a name="_atom_site_constraints"></a>\_atom\_site\_constraints
A description of the constraints applied to parameters at this
site during refinement. See also \_atom\_site\_refinement\_flags
and \_refine\_ls\_number\_constraints.
### <a name="_atom_site_description"></a>\_atom\_site\_description
A description of special aspects of this site. See also
\_atom\_site\_refinement\_flags.
### <a name="_atom_site_disorder_assembly"></a>\_atom\_site\_disorder\_assembly
A code which identifies a cluster of atoms that show long-range
positional disorder but are locally ordered. Within each such
cluster of atoms, \_atom\_site\_disorder\_group is used to identify
the sites that are simultaneously occupied. This field is only
needed if there is more than one cluster of disordered atoms
showing independent local order.
### <a name="_atom_site_disorder_group"></a>\_atom\_site\_disorder\_group
A code which identifies a group of positionally disordered atom
sites that are locally simultaneously occupied. Atoms that are
positionally disordered over two or more sites (e.g. the hydrogen
atoms of a methyl group that exists in two orientations) can
be assigned to two or more groups. Sites belonging to the same
group are simultaneously occupied, but those belonging to
different groups are not. A minus prefix (e.g. "-1") is used to
indicate sites disordered about a special position.
### <a name="_atom_site_fract_x"></a>\_atom\_site\_fract\_x
Atom-site coordinates as fractions of the \_cell\_length\_ values.
### <a name="_atom_site_label"></a>\_atom\_site\_label
The \_atom\_site\_label is a unique identifier for a particular site
in the crystal. This code is made up of a sequence of up to seven
components, \_atom\_site\_label\_component\_0 to \*\_6, which may be
specified as separate data items. Component 0 usually matches one
of the specified \_atom\_type\_symbol codes. This is not mandatory
if an \_atom\_site\_type\_symbol item is included in the atom-site
list. The \_atom\_site\_type\_symbol always takes precedence over
an \_atom\_site\_label in the identification of the atom type. The
label components 1 to 6 are optional, and normally only
components 0 and 1 are used. Note that components 0 and 1 are
concatenated, while all other components, if specified, are
separated by an underscore. Underscores are
only used if higher-order components exist. If an intermediate
component is not used, it may be omitted provided the underscore
separators are inserted. For example, the label 'C233\_\_ggg' is
acceptable and represents the components C, 233, '' and ggg.
Different labels may have a different number of components.
### <a name="_atom_site_label_component_0"></a>\_atom\_site\_label\_component\_0
Component 0 is normally a code which matches identically with
one of the \_atom\_type\_symbol codes. If this is the case, then the
rules governing the \_atom\_type\_symbol code apply. If, however,
the data item \_atom\_site\_type\_symbol is also specified in the
atom-site list, component 0 need not match this symbol or adhere
to any of the \_atom\_type\_symbol rules.
Component 1 is referred to as the "atom number". When component 0
is the atom-type code, it is used to number the sites with the
same atom type. This component code must start with at least one
digit which is not followed by a + or - sign (to distinguish it
from the component 0 rules).
Components 2 to 6 contain the identifier, residue, sequence,
asymmetry identifier and alternate codes, respectively. These
codes may be composed of any characters except an underscore.
### <a name="_atom_site_occupancy"></a>\_atom\_site\_occupancy
The fraction of the atom type present at this site.
The sum of the occupancies of all the atom types at this site
may not significantly exceed 1.0 unless it is a dummy site. The
value must lie in the 99.97% Gaussian confidence interval
-3u =< x =< 1 + 3u. The \_enumeration\_range of 0.0:1.0 is thus
correctly interpreted as meaning (0.0 - 3u) =< x =< (1.0 + 3u).
### <a name="_atom_site_refinement_flags"></a>\_atom\_site\_refinement\_flags
A concatenated series of single-letter codes which indicate the
refinement restraints or constraints applied to this site. This
item should not be used. It has been replaced by
\_atom\_site\_refinement\_flags\_posn, \*\_adp and \*\_occupancy. It is
retained in this dictionary only to provide compatibility with
legacy CIFs.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>.</td><td>no refinement constraints</td></tr>
<tr><td>S</td><td>special-position constraint on site</td></tr>
<tr><td>G</td><td>rigid-group refinement of site</td></tr>
<tr><td>R</td><td>riding-atom site attached to non-riding atom</td></tr>
<tr><td>D</td><td>distance or angle restraint on site</td></tr>
<tr><td>T</td><td>thermal displacement constraints</td></tr>
<tr><td>U</td><td>Uiso or Uij restraint (rigid bond)</td></tr>
<tr><td>P</td><td>partial occupancy constraint</td></tr>
</table>
### <a name="_atom_site_refinement_flags_adp"></a>\_atom\_site\_refinement\_flags\_adp
A code which indicates the refinement restraints or constraints
applied to the atomic displacement parameters of this site.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>.</td><td>no constraints on atomic displacement parameters</td></tr>
<tr><td>T</td><td>special-position constraints on atomic displacement parameters</td></tr>
<tr><td>U</td><td>Uiso or Uij restraint (rigid bond)</td></tr>
<tr><td>TU</td><td>both constraints applied</td></tr>
</table>
### <a name="_atom_site_refinement_flags_occupancy"></a>\_atom\_site\_refinement\_flags\_occupancy
A code which indicates that refinement restraints or
constraints were applied to the occupancy of this site.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>.</td><td>no constraints on site-occupancy parameters</td></tr>
<tr><td>P</td><td>site-occupancy constraint</td></tr>
</table>
### <a name="_atom_site_refinement_flags_posn"></a>\_atom\_site\_refinement\_flags\_posn
A code which indicates the refinement restraints or constraints
applied to the positional coordinates of this site.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>.</td><td>no constraints on positional coordinates</td></tr>
<tr><td>D</td><td>distance or angle restraint on positional coordinates</td></tr>
<tr><td>G</td><td>rigid-group refinement of positional coordinates</td></tr>
<tr><td>R</td><td>riding-atom site attached to non-riding atom</td></tr>
<tr><td>S</td><td>special-position constraint on positional coordinates</td></tr>
<tr><td>DG</td><td>combination of the above constraints</td></tr>
<tr><td>DR</td><td>combination of the above constraints</td></tr>
<tr><td>DS</td><td>combination of the above constraints</td></tr>
<tr><td>GR</td><td>combination of the above constraints</td></tr>
<tr><td>GS</td><td>combination of the above constraints</td></tr>
<tr><td>RS</td><td>combination of the above constraints</td></tr>
<tr><td>DGR</td><td>combination of the above constraints</td></tr>
<tr><td>DGS</td><td>combination of the above constraints</td></tr>
<tr><td>DRS</td><td>combination of the above constraints</td></tr>
<tr><td>GRS</td><td>combination of the above constraints</td></tr>
<tr><td>DGRS</td><td>combination of the above constraints</td></tr>
</table>
### <a name="_atom_site_restraints"></a>\_atom\_site\_restraints
A description of restraints applied to specific parameters at
this site during refinement. See also \_atom\_site\_refinement\_flags
and \_refine\_ls\_number\_restraints.
### <a name="_atom_site_symmetry_multiplicity"></a>\_atom\_site\_symmetry\_multiplicity
The multiplicity of a site due to the space-group symmetry as
given in International Tables for Crystallography Vol. A (2002).
### <a name="_atom_site_thermal_displace_type"></a>\_atom\_site\_thermal\_displace\_type
A standard code used to describe the type of atomic displacement
parameters used for the site.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>Uani</td><td>anisotropic Uij</td></tr>
<tr><td>Uiso</td><td>isotropic U</td></tr>
<tr><td>Uovl</td><td>overall U</td></tr>
<tr><td>Umpe</td><td>multipole expansion U</td></tr>
<tr><td>Bani</td><td>anisotropic Bij</td></tr>
<tr><td>Biso</td><td>isotropic B</td></tr>
<tr><td>Bovl</td><td>overall B</td></tr>
</table>
### <a name="_atom_site_type_symbol"></a>\_atom\_site\_type\_symbol
A code to identify the atom species (singular or plural)
occupying this site.
This code must match a corresponding \_atom\_type\_symbol. The
specification of this code is optional if component 0 of the
\_atom\_site\_label is used for this purpose. See \_atom\_type\_symbol.
### <a name="_atom_site_U_equiv_geom_mean"></a>\_atom\_site\_U\_equiv\_geom\_mean
Equivalent isotropic atomic displacement parameter, U(equiv),
in angstroms squared, calculated as the geometric mean of
the anisotropic atomic displacement parameters.
U(equiv) = (U~i~ U~j~ U~k~)^1/3^
U~n~ = the principal components of the orthogonalized U^ij^
Units: angstroms squared
### <a name="_atom_site_U_iso_or_equiv"></a>\_atom\_site\_U\_iso\_or\_equiv
Isotropic atomic displacement parameter, or equivalent isotropic
atomic displacement parameter, U(equiv), in angstroms squared,
calculated from anisotropic atomic displacement parameters.
U(equiv) = (1/3) sum~i~[sum~j~(U^ij^ a\*~i~ a\*~j~ a~i~ a~j~)]
a = the real-space cell lengths
a\* = the reciprocal-space cell lengths
Ref: Fischer, R. X. & Tillmanns, E. (1988). Acta Cryst. C44,
775-776.
Units: angstroms squared
### <a name="_atom_site_Wyckoff_symbol"></a>\_atom\_site\_Wyckoff\_symbol
The Wyckoff symbol (letter) as listed in the space-group tables
of International Tables for Crystallography Vol. A (2002).
## <a name="ATOM_SITES"></a>ATOM\_SITES
Data items in the ATOM\_SITES category record details about
the crystallographic cell and cell transformations, which are
common to all atom sites.
### <a name="_atom_sites_Cartn_tran_matrix_11"></a>\_atom\_sites\_Cartn\_tran\_matrix\_11
Matrix elements used to transform fractional coordinates in
the ATOM\_SITE category to Cartesian coordinates. The axial
alignments of this transformation are described in
\_atom\_sites\_Cartn\_transform\_axes. The 3 x 1 translation is
defined in \_atom\_sites\_Cartn\_tran\_vector\_.
x' |11 12 13| x | 1 |
( y' ) Cartesian = |21 22 23| ( y ) fractional + | 2 |
z' |31 32 33| z | 3 |
### <a name="_atom_sites_Cartn_tran_vector_1"></a>\_atom\_sites\_Cartn\_tran\_vector\_1
Elements of a 3 x 1 translation vector used in the
transformation of fractional coordinates in the
ATOM\_SITE category to Cartesian coordinates. The axial
alignments of this transformation are described in
\_atom\_sites\_Cartn\_transform\_axes.
x' |11 12 13| x | 1 |
( y' ) Cartesian = |21 22 23| ( y ) fractional + | 2 |
z' |31 32 33| z | 3 |
### <a name="_atom_sites_Cartn_transform_axes"></a>\_atom\_sites\_Cartn\_transform\_axes
A description of the relative alignment of the crystal cell
axes to the Cartesian orthogonal axes as applied in the
transformation matrix \_atom\_sites\_Cartn\_tran\_matrix\_.
### <a name="_atom_sites_fract_tran_matrix_11"></a>\_atom\_sites\_fract\_tran\_matrix\_11
Matrix elements used to transform Cartesian coordinates in
the ATOM\_SITE category to fractional coordinates. The axial
alignments of this transformation are described in
\_atom\_sites\_Cartn\_transform\_axes. The 3 x 1 translation is
defined in \_atom\_sites\_fract\_tran\_vector\_.
x' |11 12 13| x | 1 |
( y' ) fractional = |21 22 23| ( y ) Cartesian + | 2 |
z' |31 32 33| z | 3 |
### <a name="_atom_sites_fract_tran_vector_1"></a>\_atom\_sites\_fract\_tran\_vector\_1
Elements of a 3 x 1 translation vector used in the
transformation of Cartesian coordinates in the
ATOM\_SITE category to fractional coordinates. The axial
alignments of this transformation are described in
\_atom\_sites\_Cartn\_transform\_axes.
x' |11 12 13| x | 1 |
( y' ) fractional = |21 22 23| ( y ) Cartesian + | 2 |
z' |31 32 33| z | 3 |
### <a name="_atom_sites_solution_primary"></a>\_atom\_sites\_solution\_primary
Codes which identify the methods used to locate the initial
atom sites. The \*\_primary code identifies how the first
atom sites were determined; the \*\_secondary code identifies
how the remaining non-hydrogen sites were located; and the
\*\_hydrogens code identifies how the hydrogen sites were located.
Ref: Sheldrick, G. M., Hauptman, H. A., Weeks, C. M.,
Miller, R. and Usón, I. (2001). Ab initio phasing.
In International Tables for Crystallography,
Vol. F. Crystallography of biological macromolecules,
edited by M. G. Rossmann and E. Arnold, ch. 16.1.
Dordrecht: Kluwer Academic Publishers.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>difmap</td><td>difference Fourier map</td></tr>
<tr><td>vecmap</td><td>real-space vector search</td></tr>
<tr><td>heavy</td><td>heavy-atom method</td></tr>
<tr><td>direct</td><td>structure-invariant direct methods</td></tr>
<tr><td>geom</td><td>inferred from neighbouring sites</td></tr>
<tr><td>disper</td><td>anomalous-dispersion techniques</td></tr>
<tr><td>isomor</td><td>isomorphous structure methods</td></tr>
<tr><td>notdet</td><td>coordinates were not determined</td></tr>
<tr><td>dual</td><td>dual-space method (Sheldrick et al., 2001)</td></tr>
<tr><td>other</td><td>a method not included elsewhere in this list</td></tr>
</table>
### <a name="_atom_sites_special_details"></a>\_atom\_sites\_special\_details
Additional information about the atomic coordinates not coded
elsewhere in the CIF.
## <a name="ATOM_TYPE"></a>ATOM\_TYPE
Data items in the ATOM\_TYPE category record details about
properties of the atoms that occupy the atom sites, such as the
atomic scattering factors.
### <a name="_atom_type_analytical_mass_%"></a>\_atom\_type\_analytical\_mass\_%
Mass percentage of this atom type derived from chemical analysis.
### <a name="_atom_type_description"></a>\_atom\_type\_description
A description of the atom(s) designated by this atom type. In
most cases, this will be the element name and oxidation state of
a single atom species. For disordered or nonstoichiometric
structures it will describe a combination of atom species.
### <a name="_atom_type_number_in_cell"></a>\_atom\_type\_number\_in\_cell
Total number of atoms of this atom type in the unit cell.
### <a name="_atom_type_oxidation_number"></a>\_atom\_type\_oxidation\_number
Formal oxidation state of this atom type in the structure.
### <a name="_atom_type_radius_bond"></a>\_atom\_type\_radius\_bond
The effective intra- and intermolecular bonding radii in
angstroms of this atom type.
Units: angstroms
### <a name="_atom_type_scat_Cromer_Mann_a1"></a>\_atom\_type\_scat\_Cromer\_Mann\_a1
The Cromer-Mann scattering-factor coefficients used to calculate
the scattering factors for this atom type.
Ref: International Tables for X-ray Crystallography (1974).
Vol. IV, Table 2.2B
or International Tables for Crystallography (2004). Vol. C,
Tables 6.1.1.4 and 6.1.1.5
### <a name="_atom_type_scat_dispersion_imag"></a>\_atom\_type\_scat\_dispersion\_imag
The imaginary and real components of the anomalous-dispersion
scattering factor, f'' and f', in electrons for this atom type
and the radiation given in \_diffrn\_radiation\_wavelength.
### <a name="_atom_type_scat_dispersion_source"></a>\_atom\_type\_scat\_dispersion\_source
Reference to source of real and imaginary dispersion
corrections for scattering factors used for this atom type.
### <a name="_atom_type_scat_length_neutron"></a>\_atom\_type\_scat\_length\_neutron
The bound coherent scattering length in femtometres for the
atom type at the isotopic composition used for the diffraction
experiment.
Units: femtometres
### <a name="_atom_type_scat_source"></a>\_atom\_type\_scat\_source
Reference to source of scattering factors or scattering lengths
used for this atom type.
### <a name="_atom_type_scat_versus_stol_list"></a>\_atom\_type\_scat\_versus\_stol\_list
A table of scattering factors as a function of sin theta over
lambda. This table should be well commented to indicate the
items present. Regularly formatted lists are strongly
recommended.
### <a name="_atom_type_symbol"></a>\_atom\_type\_symbol
The code used to identify the atom species (singular or plural)
representing this atom type. Normally this code is the element
symbol. The code may be composed of any character except an
underscore with the additional proviso that digits designate an
oxidation state and must be followed by a + or - character.
## <a name="AUDIT"></a>AUDIT
Data items in the AUDIT category record details about the
creation and subsequent updating of the data block.
### <a name="_audit_block_code"></a>\_audit\_block\_code
A code intended to identify uniquely the current data block.
### <a name="_audit_creation_date"></a>\_audit\_creation\_date
The date that the data block was created. The date format
is yyyy-mm-dd.
### <a name="_audit_creation_method"></a>\_audit\_creation\_method
A description of how data were entered into the data block.
### <a name="_audit_update_record"></a>\_audit\_update\_record
A record of any changes to the data block. The update format
is a date (yyyy-mm-dd) followed by a description of the
changes. The latest update entry is added to the bottom of
this record.
## <a name="AUDIT_AUTHOR"></a>AUDIT\_AUTHOR
Data items in the AUDIT\_AUTHOR category record details about
the author(s) of the data block.
### <a name="_audit_author_address"></a>\_audit\_author\_address
The address of an author of this data block. If there are
multiple authors, \_audit\_author\_address is looped with
\_audit\_author\_name.
### <a name="_audit_author_name"></a>\_audit\_author\_name
The name of an author of this data block. If there are multiple
authors, \_audit\_author\_name is looped with \_audit\_author\_address.
The family name(s), followed by a comma and including any
dynastic components, precedes the first name(s) or initial(s).
## <a name="AUDIT_CONFORM"></a>AUDIT\_CONFORM
Data items in the AUDIT\_CONFORM category describe the
dictionary versions against which the data names appearing in
the current data block are conformant.
### <a name="_audit_conform_dict_location"></a>\_audit\_conform\_dict\_location
A file name or uniform resource locator (URL) for the
dictionary to which the current data block conforms.
### <a name="_audit_conform_dict_name"></a>\_audit\_conform\_dict\_name
The string identifying the highest-level dictionary defining
data names used in this file.
### <a name="_audit_conform_dict_version"></a>\_audit\_conform\_dict\_version
The version number of the dictionary to which the
current data block conforms.
## <a name="AUDIT_CONTACT_AUTHOR"></a>AUDIT\_CONTACT\_AUTHOR
Data items in the AUDIT\_CONTACT\_AUTHOR category record details
about the name and address of the author to be contacted
concerning the contents of this data block.
### <a name="_audit_contact_author_address"></a>\_audit\_contact\_author\_address
The mailing address of the author of the data block to whom
correspondence should be addressed.
### <a name="_audit_contact_author_email"></a>\_audit\_contact\_author\_email
The electronic mail address of the author of the data block
to whom correspondence should be addressed, in a form
recognizable to international networks. The format of e-mail
addresses is given in Section 3.4, Address Specification, of
Internet Message Format, RFC 2822, P. Resnick (Editor),
Network Standards Group, April 2001.
### <a name="_audit_contact_author_fax"></a>\_audit\_contact\_author\_fax
The facsimile telephone number of the author of the data
block to whom correspondence should be addressed.
The recommended style starts with the international dialing
prefix, followed by the area code in parentheses, followed by the
local number with no spaces.
### <a name="_audit_contact_author_name"></a>\_audit\_contact\_author\_name
The name of the author of the data block to whom correspondence
should be addressed.
The family name(s), followed by a comma and including any
dynastic components, precedes the first name(s) or initial(s).
### <a name="_audit_contact_author_phone"></a>\_audit\_contact\_author\_phone
The telephone number of the author of the data block to whom
correspondence should be addressed.
The recommended style starts with the international dialing
prefix, followed by the area code in parentheses, followed by the
local number and any extension number prefixed by 'x',
with no spaces.
## <a name="AUDIT_LINK"></a>AUDIT\_LINK
Data items in the AUDIT\_LINK category record details about the
relationships between data blocks in the current CIF.
### <a name="_audit_link_block_code"></a>\_audit\_link\_block\_code
The value of \_audit\_block\_code associated with a data block
in the current file related to the current data block. The
special value '.' may be used to refer to the current data
block for completeness.
### <a name="_audit_link_block_description"></a>\_audit\_link\_block\_description
A textual description of the relationship of the referenced
data block to the current one.
## <a name="CELL"></a>CELL
Data items in the CELL category record details about the
crystallographic cell parameters and their measurement.
### <a name="_cell_angle_alpha"></a>\_cell\_angle\_alpha
Unit-cell angles of the reported structure in degrees.
The values of \_refln\_index\_h, \*\_k, \*\_l must correspond to the
cell defined by these values and \_cell\_length\_a, \*\_b and \*\_c.
The values of \_diffrn\_refln\_index\_h, \*\_k, \*\_l may not correspond
to these values if a cell transformation took place following
the measurement of the diffraction intensities. See also
\_diffrn\_reflns\_transf\_matrix\_.
Units: degrees
### <a name="_cell_formula_units_Z"></a>\_cell\_formula\_units\_Z
The number of the formula units in the unit cell as specified
by \_chemical\_formula\_structural, \_chemical\_formula\_moiety or
\_chemical\_formula\_sum.
### <a name="_cell_length_a"></a>\_cell\_length\_a
Unit-cell lengths in angstroms corresponding to the structure
reported. The values of \_refln\_index\_h, \*\_k, \*\_l must
correspond to the cell defined by these values and \_cell\_angle\_
values. The values of \_diffrn\_refln\_index\_h, \*\_k, \*\_l may not
correspond to these values if a cell transformation took place
following the measurement of the diffraction intensities. See
also \_diffrn\_reflns\_transf\_matrix\_.
Units: angstroms
### <a name="_cell_measurement_pressure"></a>\_cell\_measurement\_pressure
The pressure in kilopascals at which the unit-cell parameters
were measured (not the pressure at which the sample was
synthesized).
Units: kilopascals
### <a name="_cell_measurement_radiation"></a>\_cell\_measurement\_radiation
Description of the radiation used to measure the unit-cell data.
See also \_cell\_measurement\_wavelength.
### <a name="_cell_measurement_reflns_used"></a>\_cell\_measurement\_reflns\_used
The total number of reflections used to determine the unit cell.
These reflections may be specified as \_cell\_measurement\_refln\_
data items.
### <a name="_cell_measurement_temperature"></a>\_cell\_measurement\_temperature
The temperature in kelvins at which the unit-cell parameters
were measured (not the temperature of synthesis).
Units: kelvin
### <a name="_cell_measurement_theta_max"></a>\_cell\_measurement\_theta\_max
The maximum and minimum theta angles of reflections
used to measure the unit cell in degrees.
Units: degrees
### <a name="_cell_measurement_wavelength"></a>\_cell\_measurement\_wavelength
The wavelength in angstroms of the radiation used to measure
the unit cell. If this is not specified, the wavelength is
assumed to be the same as that given in
\_diffrn\_radiation\_wavelength.
Units: angstroms
### <a name="_cell_reciprocal_angle_alpha"></a>\_cell\_reciprocal\_angle\_alpha
The angles defining the reciprocal cell in degrees. These
are related to those in the real cell by:
cos(recip-alpha)
= [cos(beta)\*cos(gamma) - cos(alpha)]/[sin(beta)\*sin(gamma)]
cos(recip-beta)
= [cos(gamma)\*cos(alpha) - cos(beta)]/[sin(gamma)\*sin(alpha)]
cos(recip-gamma)
= [cos(alpha)\*cos(beta) - cos(gamma)]/[sin(alpha)\*sin(beta)]
Ref: Buerger, M. J. (1942). X-ray Crystallography, p. 360.
New York: John Wiley & Sons Inc.
Units: degrees
### <a name="_cell_reciprocal_length_a"></a>\_cell\_reciprocal\_length\_a
The reciprocal-cell lengths in inverse angstroms. These are
related to the real cell by:
recip-a = b\*c\*sin(alpha)/V
recip-b = c\*a\*sin(beta)/V
recip-c = a\*b\*sin(gamma)/V
where V is the cell volume.
Ref: Buerger, M. J. (1942). X-ray Crystallography, p. 360.
New York: John Wiley & Sons Inc.
Units: reciprocal angstroms
### <a name="_cell_special_details"></a>\_cell\_special\_details
A description of special aspects of the cell choice, noting
possible alternative settings.
### <a name="_cell_volume"></a>\_cell\_volume
Cell volume V in angstroms cubed.
V = a b c [1 - cos^2^(alpha) - cos^2^(beta) - cos^2^(gamma)
+ 2 cos(alpha) cos(beta) cos(gamma) ] ^1/2^
a = \_cell\_length\_a
b = \_cell\_length\_b
c = \_cell\_length\_c
alpha = \_cell\_angle\_alpha
beta = \_cell\_angle\_beta
gamma = \_cell\_angle\_gamma
Units: cubic angstroms
## <a name="CELL_MEASUREMENT_REFLN"></a>CELL\_MEASUREMENT\_REFLN
Data items in the CELL\_MEASUREMENT\_REFLN category record
details about the reflections used in the determination of the
crystallographic cell parameters.
The \_cell\_measurement\_refln\_ data items would in general be used
only for diffractometer measurements.
### <a name="_cell_measurement_refln_index_h"></a>\_cell\_measurement\_refln\_index\_h
Miller indices of a reflection used for measurement of
the unit cell.
### <a name="_cell_measurement_refln_theta"></a>\_cell\_measurement\_refln\_theta
Theta angle in degrees for the reflection used for
measurement of the unit cell with the indices
\_cell\_measurement\_refln\_index\_.
Units: degrees
## <a name="CHEMICAL"></a>CHEMICAL
Data items in the CHEMICAL category record details about the
composition and chemical properties of the compound. The
formula data items must agree with those that specify the
density, unit-cell and Z values.
### <a name="_chemical_absolute_configuration"></a>\_chemical\_absolute\_configuration
Necessary conditions for the assignment of
\_chemical\_absolute\_configuration are given by H. D. Flack and
G. Bernardinelli (1999, 2000).
Ref: Flack, H. D. & Bernardinelli, G. (1999). Acta Cryst. A55,
908-915. ([http://www.iucr.org/paper?sh0129](http://www.iucr.org/paper?sh0129))
Flack, H. D. & Bernardinelli, G. (2000). J. Appl. Cryst.
33, 1143-1148. ([http://www.iucr.org/paper?ks0021](http://www.iucr.org/paper?ks0021))
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>rm</td><td>Absolute configuration established by
the structure determination of a
compound containing a chiral reference
molecule of known absolute
configuration.</td></tr>
<tr><td>ad</td><td>Absolute configuration established by
anomalous-dispersion effects in
diffraction measurements on the
crystal.</td></tr>
<tr><td>rmad</td><td>Absolute configuration established by
the structure determination of a
compound containing a chiral reference
molecule of known absolute
configuration and confirmed by
anomalous-dispersion effects in
diffraction measurements on the
crystal.</td></tr>
<tr><td>syn</td><td>Absolute configuration has not been
established by anomalous-dispersion
effects in diffraction measurements on
the crystal. The enantiomer has been
assigned by reference to an unchanging
chiral centre in the synthetic
procedure.</td></tr>
<tr><td>unk</td><td>Absolute configuration is unknown,
there being no firm chemical evidence
for its assignment to hand and it
having not been established by
anomalous-dispersion effects in
diffraction measurements on the
crystal. An arbitrary choice of
enantiomer has been made.</td></tr>
<tr><td>.</td><td>Inapplicable.</td></tr>
</table>
### <a name="_chemical_compound_source"></a>\_chemical\_compound\_source
Description of the source of the compound under study, or of the
parent molecule if a simple derivative is studied. This includes
the place of discovery for minerals or the actual source of a
natural product.
### <a name="_chemical_enantioexcess_bulk"></a>\_chemical\_enantioexcess\_bulk
The enantioexcess of the bulk material from which the
crystals were grown. A value of 0.0 indicates the
racemate. A value of 1.0 indicates that the compound
is enantiomerically pure.
Enantioexcess is defined in the IUPAC Recommendations
(Moss et al., 1996). The composition of the crystal
and bulk must be the same.
Ref: Moss G. P. et al. (1996). Basic Terminology of
Stereochemistry. Pure Appl. Chem., 68, 2193-2222.
[http://www.chem.qmul.ac.uk/iupac/stereo/index.html](http://www.chem.qmul.ac.uk/iupac/stereo/index.html)
Units: dimensionless
### <a name="_chemical_enantioexcess_bulk_technique"></a>\_chemical\_enantioexcess\_bulk\_technique
The experimental technique used to determine the
enantioexcess of the bulk compound.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>OA</td><td>Enantioexcess determined by
measurement of the specific rotation
of the optical activity of the bulk
compound in solution.</td></tr>
<tr><td>CD</td><td>Enantioexcess determined by
measurement of the visible/near UV
circular dichroism spectrum of the
bulk compound in solution.</td></tr>
<tr><td>EC</td><td>Enantioexcess determined by
enantioselective chromatography of
the bulk compound in solution.</td></tr>
<tr><td>other</td><td>Enantioexcess determined by
a technique not included elsewhere
in this list.</td></tr>
</table>
### <a name="_chemical_enantioexcess_crystal"></a>\_chemical\_enantioexcess\_crystal
The enantioexcess of the crystal used for the diffraction
study. A value of 0.0 indicates the racemate. A value of
1.0 indicates that the crystal is enantiomerically pure.
Enantioexcess is defined in the IUPAC Recommendations
(Moss et al., 1996).
Ref: Moss G. P. et al. (1996). Basic Terminology of
Stereochemistry. Pure Appl. Chem., 68, 2193-2222.
[http://www.chem.qmul.ac.uk/iupac/stereo/index.html](http://www.chem.qmul.ac.uk/iupac/stereo/index.html)
Units: dimensionless
### <a name="_chemical_enantioexcess_crystal_technique"></a>\_chemical\_enantioexcess\_crystal\_technique
The experimental technique used to determine the
enantioexcess of the crystal.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>CD</td><td>Enantioexcess determined by
measurement of the visible/near UV
circular dichroism spectrum of the
crystal taken into solution.</td></tr>
<tr><td>EC</td><td>Enantioexcess determined by
enantioselective chromatography of
the crystal taken into solution.</td></tr>
<tr><td>other</td><td>Enantioexcess determined by
a technique not included elsewhere
in this list.</td></tr>
</table>
### <a name="_chemical_melting_point"></a>\_chemical\_melting\_point
The temperature in kelvins at which the crystalline solid changes
to a liquid.
Units: kelvin
### <a name="_chemical_melting_point_gt"></a>\_chemical\_melting\_point\_gt
A temperature in kelvins below which (\*\_lt) or above
which (\*\_gt) the melting point (the temperature at which the
crystalline solid changes to a liquid) lies. These items allow a
range of temperatures to be given.
\_chemical\_melting\_point should always be used in preference
to these items whenever possible.
Units: kelvin
### <a name="_chemical_name_common"></a>\_chemical\_name\_common
Trivial name by which the compound is commonly known.
### <a name="_chemical_name_mineral"></a>\_chemical\_name\_mineral
Mineral name accepted by the International Mineralogical
Association. Use only for natural minerals. See also
\_chemical\_compound\_source.
### <a name="_chemical_name_structure_type"></a>\_chemical\_name\_structure\_type
Commonly used structure-type name. Usually only applied to
minerals or inorganic compounds.
### <a name="_chemical_name_systematic"></a>\_chemical\_name\_systematic
IUPAC or Chemical Abstracts full name of the compound.
### <a name="_chemical_optical_rotation"></a>\_chemical\_optical\_rotation
The optical rotation in solution of the compound is
specified in the following format:
'[α]^TEMP^~WAVE~ = SORT (c = CONC, SOLV)'
where:
TEMP is the temperature of the measurement in degrees
Celsius,
WAVE is an indication of the wavelength of the light
used for the measurement,
CONC is the concentration of the solution given as the
mass of the substance in g per 100 ml of solution,
SORT is the signed value (preceded by a + or a - sign)
of 100.α/(l.c), where α is the signed optical
rotation in degrees measured in a cell of length l in
dm and c is the value of CONC as defined above, and
SOLV is the chemical formula of the solvent.
### <a name="_chemical_properties_biological"></a>\_chemical\_properties\_biological
A free-text description of the biological properties of the
material.
### <a name="_chemical_properties_physical"></a>\_chemical\_properties\_physical
A free-text description of the physical properties of the
material.
### <a name="_chemical_temperature_decomposition"></a>\_chemical\_temperature\_decomposition
The temperature in kelvins at which the solid decomposes.
Units: kelvin
### <a name="_chemical_temperature_decomposition_gt"></a>\_chemical\_temperature\_decomposition\_gt
A temperature in kelvins below which (\*\_lt) or above which
(\*\_gt) the solid is known to decompose. These items allow
a range of temperatures to be given.
\_chemical\_temperature\_decomposition should always be used in
preference to these items whenever possible.
Units: kelvin
### <a name="_chemical_temperature_sublimation"></a>\_chemical\_temperature\_sublimation
The temperature in kelvins at which the solid sublimes.
Units: kelvin
### <a name="_chemical_temperature_sublimation_gt"></a>\_chemical\_temperature\_sublimation\_gt
A temperature in kelvins below which (\*\_lt) or above which
(\*\_gt) the solid is known to sublime. These items allow a
range of temperatures to be given.
\_chemical\_temperature\_sublimation should always be used in
preference to these items whenever possible.
Units: kelvin
## <a name="CHEMICAL_CONN_ATOM"></a>CHEMICAL\_CONN\_ATOM
Data items in the \_chemical\_conn\_atom\_ and \_chemical\_conn\_bond\_
categories record details about the two-dimensional (2D)
chemical structure of the molecular species. They allow a 2D
chemical diagram to be reconstructed for use in a publication or
in a database search for structural and substructural
relationships.
The \_chemical\_conn\_atom\_ data items provide information about
the chemical properties of the atoms in the structure. In cases
where crystallographic and molecular symmetry elements coincide,
they must also contain symmetry-generated atoms, so that the
\_chemical\_conn\_atom\_ and \_chemical\_conn\_bond\_ data items will
always describe a complete chemical entity.
### <a name="_chemical_conn_atom_charge"></a>\_chemical\_conn\_atom\_charge
The net integer charge assigned to this atom. This is the
formal charge assignment normally found in chemical diagrams.
### <a name="_chemical_conn_atom_display_x"></a>\_chemical\_conn\_atom\_display\_x
The 2D Cartesian coordinates (x,y) of the position of this atom
in a recognizable chemical diagram. The coordinate origin is at
the lower left corner, the x axis is horizontal and the y axis is
vertical. The coordinates must lie in the range 0.0 to 1.0. These
coordinates can be obtained from projections of a suitable
uncluttered view of the molecular structure.
### <a name="_chemical_conn_atom_NCA"></a>\_chemical\_conn\_atom\_NCA
The number of connected atoms excluding terminal hydrogen atoms.
### <a name="_chemical_conn_atom_NH"></a>\_chemical\_conn\_atom\_NH
The total number of hydrogen atoms attached to this atom,
regardless of whether they are included in the refinement or
the \_atom\_site\_ list. This number will be the same as
\_atom\_site\_attached\_hydrogens only if none of the hydrogen
atoms appear in the \_atom\_site\_ list.
### <a name="_chemical_conn_atom_number"></a>\_chemical\_conn\_atom\_number
The chemical sequence number to be associated with this atom.
### <a name="_chemical_conn_atom_type_symbol"></a>\_chemical\_conn\_atom\_type\_symbol
A code identifying the atom type. This code must match an
\_atom\_type\_symbol code in the \_atom\_type\_ list or be a
recognizable element symbol.
## <a name="CHEMICAL_CONN_BOND"></a>CHEMICAL\_CONN\_BOND
Data items in the \_chemical\_conn\_atom\_ and \_chemical\_conn\_bond\_
categories record details about the two-dimensional (2D)
chemical structure of the molecular species. They allow a 2D
chemical diagram to be reconstructed for use in a publication
or in a database search for structural and substructural
relationships.
The \_chemical\_conn\_bond\_ data items specify the connections
between the atoms in the \_chemical\_conn\_atom\_ list and the nature
of the chemical bond between these atoms.
### <a name="_chemical_conn_bond_atom_1"></a>\_chemical\_conn\_bond\_atom\_1
Atom numbers which must match with chemical sequence numbers
specified as \_chemical\_conn\_atom\_number values. These link the
bond connection to the chemical numbering and atom sites.
### <a name="_chemical_conn_bond_type"></a>\_chemical\_conn\_bond\_type
The chemical bond type associated with the connection between
the two sites \_chemical\_conn\_bond\_atom\_1 and \*\_2.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>sing</td><td>single bond</td></tr>
<tr><td>doub</td><td>double bond</td></tr>
<tr><td>trip</td><td>triple bond</td></tr>
<tr><td>quad</td><td>quadruple bond</td></tr>
<tr><td>arom</td><td>aromatic bond</td></tr>
<tr><td>poly</td><td>polymeric bond</td></tr>
<tr><td>delo</td><td>delocalized double bond</td></tr>
<tr><td>pi</td><td>pi bond</td></tr>
</table>
## <a name="CHEMICAL_FORMULA"></a>CHEMICAL\_FORMULA
\_chemical\_formula\_ items specify the composition and chemical
properties of the compound. The formula data items must agree
with those that specify the density, unit-cell and Z values.
The following rules apply to the construction of the data items
\_chemical\_formula\_analytical, \*\_structural and \*\_sum. For the
data item \*\_moiety, the formula construction is broken up into
residues or moieties, i.e. groups of atoms that form a molecular
unit or molecular ion. The rules given below apply within each
moiety but different requirements apply to the way that moieties
are connected (see \_chemical\_formula\_moiety).
(1) Only recognized element symbols may be used.
(2) Each element symbol is followed by a 'count' number. A
count of '1' may be omitted.
(3) A space or parenthesis must separate each cluster of (element
symbol + count).
(4) Where a group of elements is enclosed in parentheses, the
multiplier for the group must follow the closing parenthesis.
That is, all element and group multipliers are assumed to be
printed as subscripted numbers. (An exception to this rule
exists for \*\_moiety formulae where pre- and post-multipliers
are permitted for molecular units.)
(5) Unless the elements are ordered in a manner that corresponds
to their chemical structure, as in
\_chemical\_formula\_structural, the order of the elements within
any group or moiety depends on whether carbon is present or
not. If carbon is present, the order should be: C, then H,
then the other elements in alphabetical order of their
symbol. If carbon is not present, the elements are listed
purely in alphabetical order of their symbol. This is the
'Hill' system used by Chemical Abstracts. This ordering is
used in \_chemical\_formula\_moiety and \_chemical\_formula\_sum.
### <a name="_chemical_formula_analytical"></a>\_chemical\_formula\_analytical
Formula determined by standard chemical analysis including trace
elements. See the \_chemical\_formula\_[] category description for
rules for writing chemical formulae. Parentheses are used only
for standard uncertainties (e.s.d.'s).
### <a name="_chemical_formula_iupac"></a>\_chemical\_formula\_iupac
Formula expressed in conformance with IUPAC rules for inorganic
and metal-organic compounds where these conflict with the rules
for any other \_chemical\_formula\_ entries. Typically used for
formatting a formula in accordance with journal rules. This
should appear in the data block in addition to the most
appropriate of the other \_chemical\_formula\_ data names.
Ref: IUPAC (1990). Nomenclature of Inorganic Chemistry.
Oxford: Blackwell Scientific Publications.
### <a name="_chemical_formula_moiety"></a>\_chemical\_formula\_moiety
Formula with each discrete bonded residue or ion shown as a
separate moiety. See the \_chemical\_formula\_[] category
description for rules for writing chemical formulae. In addition
to the general formulae requirements, the following rules apply:
(1) Moieties are separated by commas ','.
(2) The order of elements within a moiety follows general rule
(5) in the \_chemical\_formula\_[] category description.
(3) Parentheses are not used within moieties but may surround
a moiety. Parentheses may not be nested.
(4) Charges should be placed at the end of the moiety. The
charge '+' or '-' may be preceded by a numerical multiplier
and should be separated from the last (element symbol +
count) by a space. Pre- or post-multipliers may be used for
individual moieties.
### <a name="_chemical_formula_structural"></a>\_chemical\_formula\_structural
See the \_chemical\_formula\_[] category description for the rules
for writing chemical formulae for inorganics, organometallics,
metal complexes etc., in which bonded groups are preserved
as discrete entities within parentheses, with post-multipliers
as required. The order of the elements should give as much
information as possible about the chemical structure.
Parentheses may be used and nested as required. This formula
should correspond to the structure as actually reported,
i.e. trace elements not included in atom-type and atom-site
lists should not be included in this formula (see also
\_chemical\_formula\_analytical).
### <a name="_chemical_formula_sum"></a>\_chemical\_formula\_sum
See the \_chemical\_formula\_[] category description for the rules
for writing chemical formulae in which all discrete bonded
residues and ions are summed over the constituent elements,
following the ordering given in general rule (5) in the
\_chemical\_formula\_[] category description. Parentheses are not
normally used.
### <a name="_chemical_formula_weight"></a>\_chemical\_formula\_weight
Formula mass in daltons. This mass should correspond to the
formulae given under \_chemical\_formula\_structural, \*\_iupac,
\*\_moiety or \*\_sum and, together with the Z value and cell
parameters, should yield the density given as
\_exptl\_crystal\_density\_diffrn.
Units: daltons
### <a name="_chemical_formula_weight_meas"></a>\_chemical\_formula\_weight\_meas
Formula mass in daltons measured by a non-diffraction experiment.
Units: daltons
## <a name="CITATION"></a>CITATION
Data items in the CITATION category record details about the
literature cited as being relevant to the contents of the data
block.
### <a name="_citation_abstract"></a>\_citation\_abstract
Abstract for the citation. This is used most when the
citation is extracted from a bibliographic database that
contains full text or abstract information.
### <a name="_citation_abstract_id_CAS"></a>\_citation\_abstract\_id\_CAS
The Chemical Abstracts Service (CAS) abstract identifier;
relevant for journal articles.
### <a name="_citation_book_id_ISBN"></a>\_citation\_book\_id\_ISBN
The International Standard Book Number (ISBN) code assigned to
the book cited; relevant for books or book chapters.
### <a name="_citation_book_publisher"></a>\_citation\_book\_publisher
The name of the publisher of the citation; relevant
for books or book chapters.
### <a name="_citation_book_publisher_city"></a>\_citation\_book\_publisher\_city
The location of the publisher of the citation; relevant
for books or book chapters.
### <a name="_citation_book_title"></a>\_citation\_book\_title
The title of the book in which the citation appeared; relevant
for books or book chapters.
### <a name="_citation_coordinate_linkage"></a>\_citation\_coordinate\_linkage
\_citation\_coordinate\_linkage states whether or not this citation
is concerned with precisely the set of coordinates given in the
data block. If, for instance, the publication described the same
structure, but the coordinates had undergone further refinement
prior to creation of the data block, the value of this data item
would be 'no'.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>no</td><td>citation unrelated to current coordinates</td></tr>
<tr><td>n</td><td>abbreviation for "no"</td></tr>
<tr><td>yes</td><td>citation related to current coordinates</td></tr>
<tr><td>y</td><td>abbreviation for "yes"</td></tr>
</table>
### <a name="_citation_country"></a>\_citation\_country
The country of publication; relevant for books and book
chapters.
### <a name="_citation_database_id_CSD"></a>\_citation\_database\_id\_CSD
Identifier ('refcode') of the database record in the Cambridge
Structural Database that contains details of the cited structure.
### <a name="_citation_database_id_Medline"></a>\_citation\_database\_id\_Medline
Accession number used by Medline to categorize a specific
bibliographic entry.
### <a name="_citation_id"></a>\_citation\_id
The value of \_citation\_id must uniquely identify a record in the
\_citation\_ list.
The \_citation\_id 'primary' should be used to indicate the
citation that the author(s) consider to be the most pertinent to
the contents of the data block.
Note that this item need not be a number; it can be any unique
identifier.
### <a name="_citation_journal_abbrev"></a>\_citation\_journal\_abbrev
Abbreviated name of the journal cited as given in the Chemical
Abstracts Service Source Index.
### <a name="_citation_journal_full"></a>\_citation\_journal\_full
Full name of the journal cited; relevant for journal articles.
### <a name="_citation_journal_id_ASTM"></a>\_citation\_journal\_id\_ASTM
The American Society for Testing and Materials (ASTM) code
assigned to the journal cited (also referred to as the CODEN
designator of the Chemical Abstracts Service); relevant for
journal articles.
### <a name="_citation_journal_id_CSD"></a>\_citation\_journal\_id\_CSD
The Cambridge Structural Database (CSD) code assigned to the
journal cited; relevant for journal articles. This is also the
system used at the Protein Data Bank (PDB).
### <a name="_citation_journal_id_ISSN"></a>\_citation\_journal\_id\_ISSN
The International Standard Serial Number (ISSN) code assigned to
the journal cited; relevant for journal articles.
### <a name="_citation_journal_issue"></a>\_citation\_journal\_issue
Issue number of the journal cited; relevant for journal
articles.
### <a name="_citation_journal_volume"></a>\_citation\_journal\_volume
Volume number of the journal cited; relevant for journal
articles.
### <a name="_citation_language"></a>\_citation\_language
Language in which the cited article is written.
### <a name="_citation_page_first"></a>\_citation\_page\_first
The first and last pages of the citation; relevant for
journal articles, books and book chapters.
### <a name="_citation_special_details"></a>\_citation\_special\_details
A description of special aspects of the relationship
of the contents of the data block to the literature item cited.
### <a name="_citation_title"></a>\_citation\_title
The title of the citation; relevant for journal articles, books
and book chapters.
### <a name="_citation_year"></a>\_citation\_year
The year of the citation; relevant for journal articles, books
and book chapters.
## <a name="CITATION_AUTHOR"></a>CITATION\_AUTHOR
Data items in the CITATION\_AUTHOR category record details
about the authors associated with the citations in the
\_citation\_ list.
### <a name="_citation_author_citation_id"></a>\_citation\_author\_citation\_id
The value of \_citation\_author\_citation\_id must match an
identifier specified by \_citation\_id in the \_citation\_ list.
### <a name="_citation_author_name"></a>\_citation\_author\_name
Name of an author of the citation; relevant for journal
articles, books and book chapters.
The family name(s), followed by a comma and including any
dynastic components, precedes the first name(s) or initial(s).
### <a name="_citation_author_ordinal"></a>\_citation\_author\_ordinal
This data name defines the order of the author's name in the
list of authors of a citation.
## <a name="CITATION_EDITOR"></a>CITATION\_EDITOR
Data items in the CITATION\_EDITOR category record details
about the editor associated with the book or book chapter
citations in the \_citation\_ list.
### <a name="_citation_editor_citation_id"></a>\_citation\_editor\_citation\_id
The value of \_citation\_editor\_citation\_id must match an
identifier specified by \_citation\_id in the \_citation\_ list.
### <a name="_citation_editor_name"></a>\_citation\_editor\_name
Name of an editor of the citation; relevant for books and
book chapters.
The family name(s), followed by a comma and including any
dynastic components, precedes the first name(s) or initial(s).
### <a name="_citation_editor_ordinal"></a>\_citation\_editor\_ordinal
This data name defines the order of the editor's name in the
list of editors of a citation.
## <a name="COMPUTING"></a>COMPUTING
Data items in the COMPUTING category record details about the
computer programs used in the crystal structure analysis.
### <a name="_computing_cell_refinement"></a>\_computing\_cell\_refinement
Software used in the processing of the data. Give the program
or package name and a brief reference.
## <a name="DATABASE"></a>DATABASE
Data items in the DATABASE category record details about the
database identifiers of the data block.
These data items are assigned by database managers and should
only appear in a CIF if they originate from that source.
### <a name="_database_code_CAS"></a>\_database\_code\_CAS
The codes are assigned by databases: Chemical Abstracts;
Cambridge Structural Database (organic and metal-organic
compounds); Inorganic Crystal Structure Database; Metals
Data File (metal structures); NBS (NIST) Crystal Data
Database (lattice parameters); Protein Data Bank; and the
Powder Diffraction File (JCPDS/ICDD).
### <a name="_database_code_depnum_ccdc_archive"></a>\_database\_code\_depnum\_ccdc\_archive
Deposition numbers assigned by the Cambridge Crystallographic
Data Centre (CCDC) to files containing structural information
archived by the CCDC.
### <a name="_database_code_depnum_ccdc_fiz"></a>\_database\_code\_depnum\_ccdc\_fiz
Deposition numbers assigned by the Fachinformationszentrum
Karlsruhe (FIZ) to files containing structural information
archived by the Cambridge Crystallographic Data Centre (CCDC).
### <a name="_database_code_depnum_ccdc_journal"></a>\_database\_code\_depnum\_ccdc\_journal
Deposition numbers assigned by various journals to files
containing structural information archived by the Cambridge
Crystallographic Data Centre (CCDC).
### <a name="_database_CSD_history"></a>\_database\_CSD\_history
A history of changes made by the Cambridge Crystallographic Data
Centre and incorporated into the Cambridge Structural Database
(CSD).
### <a name="_database_journal_ASTM"></a>\_database\_journal\_ASTM
The ASTM CODEN designator for a journal as given in the
Chemical Source List maintained by the Chemical Abstracts
Service, and the journal code used in the Cambridge Structural
Database.
## <a name="DIFFRN"></a>DIFFRN
Data items in the DIFFRN category record details about the
intensity measurements.
### <a name="_diffrn_ambient_environment"></a>\_diffrn\_ambient\_environment
The gas or liquid surrounding the sample, if not air.
### <a name="_diffrn_ambient_pressure"></a>\_diffrn\_ambient\_pressure
The mean hydrostatic pressure in kilopascals at which the
intensities were measured.
Units: kilopascals
### <a name="_diffrn_ambient_pressure_gt"></a>\_diffrn\_ambient\_pressure\_gt
The mean hydrostatic pressure in kilopascals above which (\*\_gt)
or below which (\*\_lt) the intensities were measured. These
items allow for a pressure range to be given.
\_diffrn\_ambient\_pressure should always be used in
preference to these items whenever possible.
Units: kilopascals
### <a name="_diffrn_ambient_temperature"></a>\_diffrn\_ambient\_temperature
The mean temperature in kelvins at which the intensities
were measured.
Units: kelvin
### <a name="_diffrn_ambient_temperature_gt"></a>\_diffrn\_ambient\_temperature\_gt
The mean temperature in kelvins above which (\*\_gt) or below
which (\*\_lt) the intensities were measured. These items allow
a range of temperatures to be given.
\_diffrn\_ambient\_temperature should always be used in preference
to these items whenever possible.
Units: kelvin
### <a name="_diffrn_crystal_treatment"></a>\_diffrn\_crystal\_treatment
Remarks about how the crystal was treated prior to the intensity
measurements. Particularly relevant when intensities were
measured at low temperature.
### <a name="_diffrn_measured_fraction_theta_full"></a>\_diffrn\_measured\_fraction\_theta\_full
Fraction of unique (symmetry-independent) reflections measured
out to \_diffrn\_reflns\_theta\_full.
### <a name="_diffrn_measured_fraction_theta_max"></a>\_diffrn\_measured\_fraction\_theta\_max
Fraction of unique (symmetry-independent) reflections measured
out to \_diffrn\_reflns\_theta\_max.
### <a name="_diffrn_special_details"></a>\_diffrn\_special\_details
Special details of the intensity-measurement process. Should
include information about source instability, crystal motion,
degradation and so on.
### <a name="_diffrn_symmetry_description"></a>\_diffrn\_symmetry\_description
Observed diffraction point symmetry, systematic absences and
possible space group(s) or superspace group(s) compatible with
these.
## <a name="DIFFRN_ATTENUATOR"></a>DIFFRN\_ATTENUATOR
Data items in the DIFFRN\_ATTENUATOR category record details
about the diffraction attenuator scales employed.
### <a name="_diffrn_attenuator_code"></a>\_diffrn\_attenuator\_code
A code associated with a particular attenuator setting. This code
is referenced by the \_diffrn\_refln\_attenuator\_code which is
stored with the intensities. See \_diffrn\_attenuator\_scale.
### <a name="_diffrn_attenuator_material"></a>\_diffrn\_attenuator\_material
Material from which the attenuator is made.
### <a name="_diffrn_attenuator_scale"></a>\_diffrn\_attenuator\_scale
The scale factor applied when an intensity measurement is
reduced by an attenuator identified by \_diffrn\_attenuator\_code.
The measured intensity must be multiplied by this scale to
convert it to the same scale as unattenuated intensities.
## <a name="DIFFRN_DETECTOR"></a>DIFFRN\_DETECTOR
Data items in the DIFFRN\_DETECTOR category describe the
detector used to measure the scattered radiation, including
any analyser and post-sample collimation.
### <a name="_diffrn_detector"></a>\_diffrn\_detector
The general class of the radiation detector.
### <a name="_diffrn_detector_area_resol_mean"></a>\_diffrn\_detector\_area\_resol\_mean
The resolution of an area detector, in pixels/mm.
Units: pixels per millimetre
### <a name="_diffrn_detector_details"></a>\_diffrn\_detector\_details
A description of special aspects of the radiation detector.
### <a name="_diffrn_detector_dtime"></a>\_diffrn\_detector\_dtime
The deadtime in microseconds of the detector used to measure
the diffraction intensities.
### <a name="_diffrn_detector_type"></a>\_diffrn\_detector\_type
The make, model or name of the detector device used.
### <a name="_diffrn_radiation_detector"></a>\_diffrn\_radiation\_detector
The detector used to measure the diffraction intensities.
### <a name="_diffrn_radiation_detector_dtime"></a>\_diffrn\_radiation\_detector\_dtime
The deadtime in microseconds of the detector used to measure
the diffraction intensities.
## <a name="DIFFRN_MEASUREMENT"></a>DIFFRN\_MEASUREMENT
Data items in the DIFFRN\_MEASUREMENT category refer to the
mounting of the sample and to the goniometer on which it is
mounted.
### <a name="_diffrn_measurement_details"></a>\_diffrn\_measurement\_details
A description of special aspects of the intensity measurement.
### <a name="_diffrn_measurement_device"></a>\_diffrn\_measurement\_device
The general class of goniometer or device used to support
and orient the specimen.
### <a name="_diffrn_measurement_device_details"></a>\_diffrn\_measurement\_device\_details
A description of special aspects of the device used to measure
the diffraction intensities.
### <a name="_diffrn_measurement_device_type"></a>\_diffrn\_measurement\_device\_type
The make, model or name of the measurement device
(goniometer) used.
### <a name="_diffrn_measurement_method"></a>\_diffrn\_measurement\_method
Method used to measure the intensities.
### <a name="_diffrn_measurement_specimen_support"></a>\_diffrn\_measurement\_specimen\_support
The physical device used to support the crystal during data
collection.
## <a name="DIFFRN_ORIENT_MATRIX"></a>DIFFRN\_ORIENT\_MATRIX
Data items in the DIFFRN\_ORIENT\_MATRIX category record details
about the orientation matrix used in the measurement of the
diffraction intensities.
### <a name="_diffrn_orient_matrix_type"></a>\_diffrn\_orient\_matrix\_type
A description of the orientation matrix type and how it should
be applied to define the orientation of the crystal precisely
with respect to the diffractometer axes.
### <a name="_diffrn_orient_matrix_UB_11"></a>\_diffrn\_orient\_matrix\_UB\_11
The elements of the diffractometer orientation matrix. These
define the dimensions of the reciprocal cell and its orientation
to the local diffractometer axes. See \_diffrn\_orient\_matrix\_type.
## <a name="DIFFRN_ORIENT_REFLN"></a>DIFFRN\_ORIENT\_REFLN
Data items in the DIFFRN\_ORIENT\_REFLN category record details
about the reflections that define the orientation matrix used in
the measurement of the diffraction intensities.
### <a name="_diffrn_orient_refln_angle_chi"></a>\_diffrn\_orient\_refln\_angle\_chi
Diffractometer angles of a reflection used to define
the orientation matrix in degrees. See
\_diffrn\_orient\_matrix\_UB\_ and
\_diffrn\_orient\_refln\_index\_h, \*\_k and \*\_l.
Units: degrees
### <a name="_diffrn_orient_refln_index_h"></a>\_diffrn\_orient\_refln\_index\_h
The indices of a reflection used to define the orientation
matrix. See \_diffrn\_orient\_matrix\_.
## <a name="DIFFRN_RADIATION"></a>DIFFRN\_RADIATION
Data items in the DIFFRN\_RADIATION category describe the
radiation used in measuring the diffraction intensities, its
collimation and monochromatization before the sample.
Post-sample treatment of the beam is described by data items
in the DIFFRN\_DETECTOR category.
### <a name="_diffrn_radiation_collimation"></a>\_diffrn\_radiation\_collimation
The collimation or focusing applied to the radiation.
### <a name="_diffrn_radiation_filter_edge"></a>\_diffrn\_radiation\_filter\_edge
Absorption edge in angstroms of the radiation filter used.
Units: angstroms
### <a name="_diffrn_radiation_inhomogeneity"></a>\_diffrn\_radiation\_inhomogeneity
Half-width in millimetres of the incident beam in the
direction perpendicular to the diffraction plane.
### <a name="_diffrn_radiation_monochromator"></a>\_diffrn\_radiation\_monochromator
The method used to obtain monochromatic radiation. If a mono-
chromator crystal is used, the material and the indices of the
Bragg reflection are specified.
### <a name="_diffrn_radiation_polarisn_norm"></a>\_diffrn\_radiation\_polarisn\_norm
The angle in degrees, as viewed from the specimen, between the
perpendicular component of the polarization and the diffraction
plane. See \_diffrn\_radiation\_polarisn\_ratio.
Units: degrees
### <a name="_diffrn_radiation_polarisn_ratio"></a>\_diffrn\_radiation\_polarisn\_ratio
Polarization ratio of the diffraction beam incident on the
crystal. It is the ratio of the perpendicularly polarized to the
parallel polarized components of the radiation. The perpendicular
component forms an angle of \_diffrn\_radiation\_polarisn\_norm to
the normal to the diffraction plane of the sample (i.e. the plane
containing the incident and reflected beams).
### <a name="_diffrn_radiation_probe"></a>\_diffrn\_radiation\_probe
The nature of the radiation used (i.e. the name of the
subatomic particle or the region of the electromagnetic
spectrum). It is strongly recommended that this information
be given, so that the probe radiation can be simply determined.
Values:
* x-ray
* neutron
* electron
* gamma
### <a name="_diffrn_radiation_type"></a>\_diffrn\_radiation\_type
The type of the radiation. This is used to give a more
detailed description than \_diffrn\_radiation\_probe and is
typically a description of the X-ray wavelength in Siegbahn
notation.
### <a name="_diffrn_radiation_xray_symbol"></a>\_diffrn\_radiation\_xray\_symbol
The IUPAC symbol for the X-ray wavelength for the probe
radiation.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>K-L~3~</td><td>Kα~1~ in older Siegbahn notation</td></tr>
<tr><td>K-L~2~</td><td>Kα~2~ in older Siegbahn notation</td></tr>
<tr><td>K-M~3~</td><td>Kβ~1~ in older Siegbahn notation</td></tr>
<tr><td>K-L~2,3~</td><td>use where K-L~3~ and K-L~2~ are not resolved</td></tr>
</table>
## <a name="DIFFRN_RADIATION_WAVELENGTH"></a>DIFFRN\_RADIATION\_WAVELENGTH
Data items in the DIFFRN\_RADIATION\_WAVELENGTH category describe
the wavelength of the radiation used in measuring the diffraction
intensities. Items may be looped to identify and assign weights
to distinct wavelength components from a polychromatic beam.
### <a name="_diffrn_radiation_wavelength"></a>\_diffrn\_radiation\_wavelength
The radiation wavelength in angstroms.
Units: angstroms
### <a name="_diffrn_radiation_wavelength_id"></a>\_diffrn\_radiation\_wavelength\_id
An arbitrary code identifying each value of
\_diffrn\_radiation\_wavelength. Items in the DIFFRN\_RADIATION
category are looped when multiple wavelengths are used.
This code is used to link with the \_diffrn\_refln\_ list. It
must match with one of the \_diffrn\_refln\_wavelength\_id codes.
### <a name="_diffrn_radiation_wavelength_wt"></a>\_diffrn\_radiation\_wavelength\_wt
The relative weight of a wavelength identified by the code
\_diffrn\_radiation\_wavelength\_id in the list of wavelengths.
## <a name="DIFFRN_REFLN"></a>DIFFRN\_REFLN
Data items in the DIFFRN\_REFLN category record details about
the intensities measured in the diffraction experiment.
The DIFFRN\_REFLN data items refer to individual intensity
measurements and must be included in looped lists.
(The DIFFRN\_REFLNS data items specify the parameters that apply
to all intensity measurements. The DIFFRN\_REFLNS data items
are not looped.)
### <a name="_diffrn_refln_angle_chi"></a>\_diffrn\_refln\_angle\_chi
The diffractometer angles of a reflection in degrees. These
correspond to the specified orientation matrix and the original
measured cell before any subsequent cell transformations.
Units: degrees
### <a name="_diffrn_refln_attenuator_code"></a>\_diffrn\_refln\_attenuator\_code
The code identifying the attenuator setting for this reflection.
This code must match one of the \_diffrn\_attenuator\_code values.
### <a name="_diffrn_refln_class_code"></a>\_diffrn\_refln\_class\_code
The code identifying the class to which this reflection has
been assigned. This code must match a value of
\_diffrn\_reflns\_class\_code. Reflections may be grouped into
classes for a variety of purposes. For example, for modulated
structures each reflection class may be defined by the
number m=sum|m~i~|, where the m~i~ are the integer coefficients
that, in addition to h,k,l, index the corresponding diffraction
vector in the basis defined for the reciprocal lattice.
### <a name="_diffrn_refln_counts_bg_1"></a>\_diffrn\_refln\_counts\_bg\_1
The diffractometer counts for the measurements: background
before the peak, background after the peak, net counts after
background removed, counts for peak scan or position, and the
total counts (background plus peak).
### <a name="_diffrn_refln_crystal_id"></a>\_diffrn\_refln\_crystal\_id
Code identifying each crystal if multiple crystals are used. Is
used to link with \_exptl\_crystal\_id in the \_exptl\_crystal\_ list.
### <a name="_diffrn_refln_detect_slit_horiz"></a>\_diffrn\_refln\_detect\_slit\_horiz
Total slit apertures in degrees in the diffraction plane
(\*\_horiz) and perpendicular to the diffraction plane (\*\_vert).
Units: degrees
### <a name="_diffrn_refln_elapsed_time"></a>\_diffrn\_refln\_elapsed\_time
Elapsed time in minutes from the start of the diffraction
experiment to the measurement of this intensity.
Units: minutes
### <a name="_diffrn_refln_index_h"></a>\_diffrn\_refln\_index\_h
Miller indices of a measured reflection. These need not match
the \_refln\_index\_h, \*\_k, \*\_l values if a transformation of the
original measured cell has taken place. Details of the cell
transformation are given in \_diffrn\_reflns\_reduction\_process.
See also \_diffrn\_reflns\_transf\_matrix\_.
### <a name="_diffrn_refln_intensity_net"></a>\_diffrn\_refln\_intensity\_net
Net intensity calculated from the diffraction counts after
the attenuator and standard scales have been applied.
### <a name="_diffrn_refln_intensity_sigma"></a>\_diffrn\_refln\_intensity\_sigma
Standard uncertainty (e.s.d.) of the net intensity calculated
from the diffraction counts after the attenuator and standard
scales have been applied.
### <a name="_diffrn_refln_intensity_u"></a>\_diffrn\_refln\_intensity\_u
Standard uncertainty of the net intensity calculated from
the diffraction counts after the attenuator and standard
scales have been applied.
### <a name="_diffrn_refln_scale_group_code"></a>\_diffrn\_refln\_scale\_group\_code
The code identifying the scale applicable to this reflection.
This code must match with a specified \_diffrn\_scale\_group\_code
value.
### <a name="_diffrn_refln_scan_mode"></a>\_diffrn\_refln\_scan\_mode
The code identifying the mode of scanning for measurements
using a diffractometer. See \_diffrn\_refln\_scan\_width and
\_diffrn\_refln\_scan\_mode\_backgd.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>om</td><td>omega scan</td></tr>
<tr><td>ot</td><td>omega/2theta scan</td></tr>
<tr><td>q</td><td>Q scans (arbitrary reciprocal directions)</td></tr>
</table>
### <a name="_diffrn_refln_scan_mode_backgd"></a>\_diffrn\_refln\_scan\_mode\_backgd
The code identifying the mode of scanning a reflection to measure
the background intensity.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>st</td><td>stationary counter background</td></tr>
<tr><td>mo</td><td>moving counter background</td></tr>
</table>
### <a name="_diffrn_refln_scan_rate"></a>\_diffrn\_refln\_scan\_rate
The rate of scanning a reflection in
degrees per minute to measure the intensity.
Units: degrees per minute
### <a name="_diffrn_refln_scan_time_backgd"></a>\_diffrn\_refln\_scan\_time\_backgd
The time spent measuring each background in seconds.
Units: seconds
### <a name="_diffrn_refln_scan_width"></a>\_diffrn\_refln\_scan\_width
The scan width in degrees of the scan mode defined by the code
\_diffrn\_refln\_scan\_mode.
Units: degrees
### <a name="_diffrn_refln_sint/lambda"></a>\_diffrn\_refln\_sint/lambda
The (sin theta)/lambda value in reciprocal angstroms for
this reflection.
Units: reciprocal angstroms
### <a name="_diffrn_refln_standard_code"></a>\_diffrn\_refln\_standard\_code
A code indicating that this reflection was measured as a
standard reflection. The value must be '.' or match one of
the \_diffrn\_standard\_refln\_code values.
### <a name="_diffrn_refln_wavelength"></a>\_diffrn\_refln\_wavelength
The mean wavelength in angstroms of the radiation used to measure
the intensity of this reflection. This is an important parameter
for reflections measured using energy-dispersive detectors or the
Laue method.
Units: angstroms
### <a name="_diffrn_refln_wavelength_id"></a>\_diffrn\_refln\_wavelength\_id
Code identifying the wavelength in the \_diffrn\_radiation\_ list.
## <a name="DIFFRN_REFLNS"></a>DIFFRN\_REFLNS
Data items in the DIFFRN\_REFLNS category record details about
the set of intensities measured in the diffraction experiment.
The DIFFRN\_REFLNS data items specify the parameters that apply
to all intensity measurements. The DIFFRN\_REFLNS data items
are not looped.
(The DIFFRN\_REFLN data items refer to individual intensity
measurements and must be included in looped lists.)
### <a name="_diffrn_reflns_av_R_equivalents"></a>\_diffrn\_reflns\_av\_R\_equivalents
The residual [sum av|del(I)| / sum |av(I)|] for
symmetry-equivalent reflections used to calculate the
average intensity av(I). The av|del(I)| term is the
average absolute difference between av(I) and the
individual symmetry-equivalent intensities.
### <a name="_diffrn_reflns_av_sigmaI/netI"></a>\_diffrn\_reflns\_av\_sigmaI/netI
Measure [sum |u(net I)|/sum|net I|] for all measured reflections.
### <a name="_diffrn_reflns_av_unetI/netI"></a>\_diffrn\_reflns\_av\_unetI/netI
Measure [sum |u(net I)|/sum|net I|] for all measured reflections.
### <a name="_diffrn_reflns_Laue_measured_fraction_full"></a>\_diffrn\_reflns\_Laue\_measured\_fraction\_full
Fraction of Laue unique reflections (symmetry-independent in
the Laue group) measured out to the resolution given in
\_diffrn\_reflns\_resolution\_full or \_diffrn\_reflns\_theta\_full.
The Laue group always contains a centre of symmetry so that
the reflection h,k,l is always equivalent to the reflection
-h,-k,-l even in space groups without a centre of symmetry.
This number should not be less than 0.95, since it represents
the fraction of reflections measured in the part of the
diffraction pattern that is essentially complete.
### <a name="_diffrn_reflns_Laue_measured_fraction_max"></a>\_diffrn\_reflns\_Laue\_measured\_fraction\_max
Fraction of Laue unique reflections (symmetry-independent in
the Laue group) measured out to the resolution given in
\_diffrn\_reflns\_resolution\_max or \_diffrn\_reflns\_theta\_max.
The Laue group always contains a centre of symmetry so that the
reflection h,k,l is always equivalent to the reflection -h,-k,-l
even in space groups without a centre of symmetry.
### <a name="_diffrn_reflns_limit_h_max"></a>\_diffrn\_reflns\_limit\_h\_max
The limits on the Miller indices of the intensities specified
by \_diffrn\_refln\_index\_h, \*\_k, \*\_l.
### <a name="_diffrn_reflns_number"></a>\_diffrn\_reflns\_number
The total number of measured intensities, excluding
reflections that are classed as systematically absent arising
from translational symmetry in the crystal unit cell.
### <a name="_diffrn_reflns_point_group_measured_fraction_full"></a>\_diffrn\_reflns\_point\_group\_measured\_fraction\_full
Fraction of crystal point-group unique reflections (i.e.
symmetry-independent in the crystal point group) measured
out to the resolution given in \_diffrn\_reflns\_resolution\_full
or \_diffrn\_reflns\_theta\_full. For space groups that do not
contain a centre of symmetry the reflections h,k,l and
-h,-k,-l are independent. This number should not be less
than 0.95, since it represents the fraction of reflections
measured in the part of the diffraction pattern that is
essentially complete.
### <a name="_diffrn_reflns_point_group_measured_fraction_max"></a>\_diffrn\_reflns\_point\_group\_measured\_fraction\_max
Fraction of crystal point-group unique reflections (i.e.
symmetry-independent in the crystal point group) measured
out to the resolution given in \_diffrn\_reflns\_resolution\_max
or \_diffrn\_reflns\_theta\_max. For space groups that do not
contain a centre of symmetry the reflections h,k,l and
-h,-k,-l are independent.
### <a name="_diffrn_reflns_reduction_process"></a>\_diffrn\_reflns\_reduction\_process
A description of the process used to reduce the intensities
into structure-factor magnitudes.
### <a name="_diffrn_reflns_resolution_full"></a>\_diffrn\_reflns\_resolution\_full
The resolution in reciprocal angstroms at which the measured
reflection count is close to complete. The fraction of unique
reflections measured out to this angle is given by
\_diffrn\_measured\_fraction\_theta\_full.
Units: reciprocal angstroms
### <a name="_diffrn_reflns_resolution_max"></a>\_diffrn\_reflns\_resolution\_max
Maximum resolution in reciprocal angstroms of the measured
diffraction pattern. The fraction of unique reflections
measured out to this angle is given by
\_diffrn\_measured\_fraction\_theta\_max
Units: reciprocal angstroms
### <a name="_diffrn_reflns_theta_full"></a>\_diffrn\_reflns\_theta\_full
The theta angle (in degrees) at which the measured reflection
count is close to complete. The fraction of unique reflections
measured out to this angle is given by
\_diffrn\_measured\_fraction\_theta\_full.
Units: degrees
### <a name="_diffrn_reflns_theta_max"></a>\_diffrn\_reflns\_theta\_max
Maximum theta angle in degrees for the measured intensities.
The fraction of unique reflections measured out to this angle
is given by \_diffrn\_measured\_fraction\_theta\_max
Units: degrees
### <a name="_diffrn_reflns_theta_min"></a>\_diffrn\_reflns\_theta\_min
Minimum theta angle in degrees for the measured intensities.
Units: degrees
### <a name="_diffrn_reflns_transf_matrix_11"></a>\_diffrn\_reflns\_transf\_matrix\_11
Elements of the matrix used to transform the diffraction
reflection indices \_diffrn\_refln\_index\_h, \*\_k, \*\_l into the
\_refln\_index\_h, \*\_k, \*\_l indices.
|11 12 13|
(h k l) diffraction |21 22 23| = (h' k' l')
|31 32 33|
## <a name="DIFFRN_REFLNS_CLASS"></a>DIFFRN\_REFLNS\_CLASS
Data items in the DIFFRN\_REFLNS\_CLASS category record details
about the classes of reflections measured in the diffraction
experiment.
### <a name="_diffrn_reflns_class_av_R_eq"></a>\_diffrn\_reflns\_class\_av\_R\_eq
For each reflection class, the residual
[sum av|del(I)|/sum|av(I)|] for symmetry-equivalent reflections
used to calculate the average intensity av(I). The av|del(I)|
term is the average absolute difference between av(I) and the
individual intensities.
### <a name="_diffrn_reflns_class_av_sgI/I"></a>\_diffrn\_reflns\_class\_av\_sgI/I
Measure [sum|u(net I)|/sum|net I|] for all measured intensities
in a reflection class.
### <a name="_diffrn_reflns_class_av_uI/I"></a>\_diffrn\_reflns\_class\_av\_uI/I
Measure [sum|u(net I)|/sum|net I|] for all measured intensities
in a reflection class.
### <a name="_diffrn_reflns_class_code"></a>\_diffrn\_reflns\_class\_code
The code identifying a certain reflection class.
### <a name="_diffrn_reflns_class_d_res_high"></a>\_diffrn\_reflns\_class\_d\_res\_high
The smallest value in angstroms of the interplanar
spacings of the reflections in each reflection class.
This is called the highest resolution for this reflection class.
Units: Angstroms
### <a name="_diffrn_reflns_class_d_res_low"></a>\_diffrn\_reflns\_class\_d\_res\_low
The highest value in angstroms of the interplanar
spacings of the reflections in each reflection class.
This is called the lowest resolution for this reflection class.
Units: Angstroms
### <a name="_diffrn_reflns_class_description"></a>\_diffrn\_reflns\_class\_description
Description of each reflection class.
### <a name="_diffrn_reflns_class_number"></a>\_diffrn\_reflns\_class\_number
The total number of measured intensities for each reflection
class, excluding the systematic absences arising from
centring translations.
## <a name="DIFFRN_SCALE_GROUP"></a>DIFFRN\_SCALE\_GROUP
Data items in the DIFFRN\_SCALE\_GROUP category record details
of the scaling factors applied to place all intensities in
the reflection lists on a common scale.
Scaling groups might, for instance, correspond to each film
in a multi-film data set or each crystal in a multi-crystal
data set.
### <a name="_diffrn_scale_group_code"></a>\_diffrn\_scale\_group\_code
The code identifying a specific measurement group (e.g. for
multi-film or multi-crystal data). The code must match a
\_diffrn\_refln\_scale\_group\_code in the reflection list.
### <a name="_diffrn_scale_group_I_net"></a>\_diffrn\_scale\_group\_I\_net
The scale for a specific measurement group which is to be
multiplied with the net intensity to place all intensities
in the \_diffrn\_refln\_ or \_refln\_ list on a common scale.
## <a name="DIFFRN_SOURCE"></a>DIFFRN\_SOURCE
Data items in the DIFFRN\_SOURCE category record details of
the source of radiation used in the diffraction experiment.
### <a name="_diffrn_radiation_source"></a>\_diffrn\_radiation\_source
The source of radiation.
### <a name="_diffrn_source"></a>\_diffrn\_source
The general class of the source of radiation.
### <a name="_diffrn_source_current"></a>\_diffrn\_source\_current
The current in milliamperes at which the radiation source was
operated.
Units: milliamperes
### <a name="_diffrn_source_details"></a>\_diffrn\_source\_details
A description of special aspects of the source.
### <a name="_diffrn_source_power"></a>\_diffrn\_source\_power
The power in kilowatts at which the radiation source was
operated.
Units: kilowatts
### <a name="_diffrn_source_size"></a>\_diffrn\_source\_size
The dimensions of the source as viewed from the sample.
### <a name="_diffrn_source_take-off_angle"></a>\_diffrn\_source\_take-off\_angle
The complement of the angle in degrees between the normal
to the surface of the X-ray tube target and the primary
X-ray beam for beams generated by traditional X-ray tubes.
### <a name="_diffrn_source_target"></a>\_diffrn\_source\_target
The chemical element symbol for the X-ray target
(usually the anode) used to generate X-rays.
This can also be used for spallation sources.
Values:
* H
* He
* Li
* Be
* B
* C
* N
* O
* F
* Ne
* Na
* Mg
* Al
* Si
* P
* S
* Cl
* Ar
* K
* Ca
* Sc
* Ti
* V
* Cr
* Mn
* Fe
* Co
* Ni
* Cu
* Zn
* Ga
* Ge
* As
* Se
* Br
* Kr
* Rb
* Sr
* Y
* Zr
* Nb
* Mo
* Tc
* Ru
* Rh
* Pd
* Ag
* Cd
* In
* Sn
* Sb
* Te
* I
* Xe
* Cs
* Ba
* La
* Ce
* Pr
* Nd
* Pm
* Sm
* Eu
* Gd
* Tb
* Dy
* Ho
* Er
* Tm
* Yb
* Lu
* Hf
* Ta
* W
* Re
* Os
* Ir
* Pt
* Au
* Hg
* Tl
* Pb
* Bi
* Po
* At
* Rn
* Fr
* Ra
* Ac
* Th
* Pa
* U
* Np
* Pu
* Am
* Cm
* Bk
* Cf
* Es
* Fm
* Md
* No
* Lr
### <a name="_diffrn_source_type"></a>\_diffrn\_source\_type
The make, model or name of the source of radiation.
### <a name="_diffrn_source_voltage"></a>\_diffrn\_source\_voltage
The voltage in kilovolts at which the radiation source was
operated.
Units: kilovolts
## <a name="DIFFRN_STANDARD_REFLN"></a>DIFFRN\_STANDARD\_REFLN
Data items in the DIFFRN\_STANDARD\_REFLN category record details
about the reflections treated as standards during the measurement
of the diffraction intensities.
Note that these are the individual standard reflections, not the
results of the analysis of the standard reflections.
### <a name="_diffrn_standard_refln_code"></a>\_diffrn\_standard\_refln\_code
The code identifying a reflection measured as a standard
reflection with the indices \_diffrn\_standard\_refln\_index\_.
This is the same code as the \_diffrn\_refln\_standard\_code in
the \_diffrn\_refln\_ list.
### <a name="_diffrn_standard_refln_index_h"></a>\_diffrn\_standard\_refln\_index\_h
Miller indices of standard reflections used in the diffraction
measurement process.
## <a name="DIFFRN_STANDARDS"></a>DIFFRN\_STANDARDS
Data items in the DIFFRN\_STANDARDS category record details
about the set of standard reflections used to monitor intensity
stability during the measurement of diffraction intensities.
Note that these records describe properties common to the set of
standard reflections, not the standard reflections themselves.
### <a name="_diffrn_standards_decay_%"></a>\_diffrn\_standards\_decay\_%
The percentage decrease in the mean
intensity of the set of standard reflections measured at the
start of the measurement process and at the finish. This value
usually affords a measure of the overall decay in crystal
quality during the diffraction measurement process. Negative
values are used in exceptional instances where the final
intensities are greater than the initial ones. If no
measurable decay has occurred, the standard uncertainty should
be quoted to indicate the maximum possible value the decay
might have. A range of 3 standard uncertainties is considered
possible. Thus 0.0(1) would indicate a decay of less than
0.3% or an enhancement of less than 0.3%.
### <a name="_diffrn_standards_interval_count"></a>\_diffrn\_standards\_interval\_count
The number of reflection intensities, or the time in minutes,
between the measurement of standard reflection intensities.
### <a name="_diffrn_standards_number"></a>\_diffrn\_standards\_number
The number of unique standard reflections used during the
measurement of the diffraction intensities.
### <a name="_diffrn_standards_scale_sigma"></a>\_diffrn\_standards\_scale\_sigma
The standard uncertainty (e.s.d.) of the individual mean
standard scales applied to the intensity data.
### <a name="_diffrn_standards_scale_u"></a>\_diffrn\_standards\_scale\_u
The standard uncertainty of the individual mean
standard scales applied to the intensity data.
## <a name="EXPTL"></a>EXPTL
Data items in the EXPTL category record details about the
experimental work prior to the intensity measurements and
details about the absorption-correction technique employed.
### <a name="_exptl_absorpt_coefficient_mu"></a>\_exptl\_absorpt\_coefficient\_mu
The absorption coefficient mu in reciprocal millimetres
calculated from the atomic content of the cell, the density and
the radiation wavelength.
Units: reciprocal millimetres
### <a name="_exptl_absorpt_correction_T_max"></a>\_exptl\_absorpt\_correction\_T\_max
The maximum and minimum transmission factors applied to the
diffraction pattern measured in this experiment. These
factors are also referred to as the absorption correction
A or 1/A\*. As this value is the one that is applied to
the measured intensities, it includes the correction for
absorption by the specimen mount and diffractometer as well
as by the specimen itself.
### <a name="_exptl_absorpt_correction_type"></a>\_exptl\_absorpt\_correction\_type
The absorption-correction type and method. The value 'empirical'
should NOT be used unless more detailed information is not
available.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>analytical</td><td>analytical from crystal shape</td></tr>
<tr><td>cylinder</td><td>cylindrical</td></tr>
<tr><td>empirical</td><td>empirical from intensities</td></tr>
<tr><td>gaussian</td><td>Gaussian from crystal shape</td></tr>
<tr><td>integration</td><td>integration from crystal shape</td></tr>
<tr><td>multi-scan</td><td>symmetry-related measurements</td></tr>
<tr><td>none</td><td>no absorption correction applied</td></tr>
<tr><td>numerical</td><td>numerical from crystal shape</td></tr>
<tr><td>psi-scan</td><td>psi-scan corrections</td></tr>
<tr><td>refdelf</td><td>refined from delta-F</td></tr>
<tr><td>sphere</td><td>spherical</td></tr>
</table>
### <a name="_exptl_absorpt_process_details"></a>\_exptl\_absorpt\_process\_details
Description of the absorption process applied to the
intensities. A literature reference should be supplied
for psi-scan techniques.
### <a name="_exptl_crystals_number"></a>\_exptl\_crystals\_number
The total number of crystals used for the measurement of
intensities.
### <a name="_exptl_special_details"></a>\_exptl\_special\_details
Any special information about the experimental work prior to the
intensity measurements. See also \_exptl\_crystal\_preparation.
### <a name="_exptl_transmission_factor_max"></a>\_exptl\_transmission\_factor\_max
The calculated maximum value of the transmission factor for
the specimen. Its value does not include the effects of
absorption in the specimen mount. The presence of this
item does not imply that the structure factors have been
corrected for absorption. The applied correction should be
given by \_exptl\_absorpt\_correction\_T\_max.
### <a name="_exptl_transmission_factor_min"></a>\_exptl\_transmission\_factor\_min
The calculated minimum value of the transmission factor for
the specimen. Its value does not include the effects of
absorption in the specimen mount. The presence of this
item does not imply that the structure factors have been
corrected for absorption. The applied correction should be
given by \_exptl\_absorpt\_correction\_T\_min.
## <a name="EXPTL_CRYSTAL"></a>EXPTL\_CRYSTAL
Data items in the EXPTL\_CRYSTAL category record details about
experimental measurements on the crystal or crystals used,
such as shape, size or density.
### <a name="_exptl_crystal_colour"></a>\_exptl\_crystal\_colour
The colour of the crystal.
### <a name="_exptl_crystal_colour_lustre"></a>\_exptl\_crystal\_colour\_lustre
The enumeration list of standardized names developed for the
International Centre for Diffraction Data.
The colour of a crystal is given by the combination of
\_exptl\_crystal\_colour\_modifier with
\_exptl\_crystal\_colour\_primary, as in 'dark-green' or
'bluish-violet', if necessary combined with
\_exptl\_crystal\_colour\_lustre, as in 'metallic-green'.
Values:
* metallic
* dull
* clear
### <a name="_exptl_crystal_colour_modifier"></a>\_exptl\_crystal\_colour\_modifier
The enumeration list of standardized names developed for the
International Centre for Diffraction Data.
The colour of a crystal is given by the combination of
\_exptl\_crystal\_colour\_modifier with
\_exptl\_crystal\_colour\_primary, as in 'dark-green' or
'bluish-violet', if necessary combined with
\_exptl\_crystal\_colour\_lustre, as in 'metallic-green'.
Values:
* light
* dark
* whitish
* blackish
* grayish
* brownish
* reddish
* pinkish
* orangish
* yellowish
* greenish
* bluish
### <a name="_exptl_crystal_colour_primary"></a>\_exptl\_crystal\_colour\_primary
The enumeration list of standardized names developed for the
International Centre for Diffraction Data.
The colour of a crystal is given by the combination of
\_exptl\_crystal\_colour\_modifier with
\_exptl\_crystal\_colour\_primary, as in 'dark-green' or
'bluish-violet', if necessary combined with
\_exptl\_crystal\_colour\_lustre, as in 'metallic-green'.
Values:
* colourless
* white
* black
* gray
* brown
* red
* pink
* orange
* yellow
* green
* blue
* violet
### <a name="_exptl_crystal_density_diffrn"></a>\_exptl\_crystal\_density\_diffrn
Density values calculated from the crystal cell and contents. The
units are megagrams per cubic metre (grams per cubic centimetre).
Units: megagrams per cubic metre
### <a name="_exptl_crystal_density_meas"></a>\_exptl\_crystal\_density\_meas
Density values measured using standard chemical and physical
methods. The units are megagrams per cubic metre (grams per
cubic centimetre).
Units: megagrams per cubic metre
### <a name="_exptl_crystal_density_meas_gt"></a>\_exptl\_crystal\_density\_meas\_gt
The value above which the density measured using standard
chemical and physical methods lies. The units are megagrams
per cubic metre (grams per cubic centimetre).
\_exptl\_crystal\_density\_meas\_gt and
\_exptl\_crystal\_density\_meas\_lt should not be used to
report new experimental work, for which
\_exptl\_crystal\_density\_meas should be used. These items
are intended for use in reporting information in
existing databases and archives which would be misleading if
reported under \_exptl\_crystal\_density\_meas.
Units: megagrams per cubic metre
### <a name="_exptl_crystal_density_meas_lt"></a>\_exptl\_crystal\_density\_meas\_lt
The value below which the density measured using standard
chemical and physical methods lies. The units are megagrams
per cubic metre (grams per cubic centimetre).
\_exptl\_crystal\_density\_meas\_gt and
\_exptl\_crystal\_density\_meas\_lt should not be used to
report new experimental work, for which
\_exptl\_crystal\_density\_meas should be used. These items
are intended for use in reporting information in
existing databases and archives which would be misleading if
reported under \_exptl\_crystal\_density\_meas.
Units: megagrams per cubic metre
### <a name="_exptl_crystal_density_meas_temp"></a>\_exptl\_crystal\_density\_meas\_temp
Temperature in kelvins at which \_exptl\_crystal\_density\_meas
was determined.
Units: kelvin
### <a name="_exptl_crystal_density_meas_temp_gt"></a>\_exptl\_crystal\_density\_meas\_temp\_gt
Temperature in kelvins above which \_exptl\_crystal\_density\_meas
was determined. \_exptl\_crystal\_density\_meas\_temp\_gt and
\_exptl\_crystal\_density\_meas\_temp\_lt should not be used for
reporting new work, for which the correct temperature of
measurement should be given. These items are intended for
use in reporting information stored in databases
or archives which would be misleading if reported under
\_exptl\_crystal\_density\_meas\_temp.
Units: kelvin
### <a name="_exptl_crystal_density_meas_temp_lt"></a>\_exptl\_crystal\_density\_meas\_temp\_lt
Temperature in kelvins below which \_exptl\_crystal\_density\_meas
was determined. \_exptl\_crystal\_density\_meas\_temp\_gt and
\_exptl\_crystal\_density\_meas\_temp\_lt should not be used for
reporting new work, for which the correct temperature of
measurement should be given. These items are intended for
use in reporting information stored in databases
or archives which would be misleading if reported under
\_exptl\_crystal\_density\_meas\_temp.
Units: kelvin
### <a name="_exptl_crystal_density_method"></a>\_exptl\_crystal\_density\_method
The method used to measure \_exptl\_crystal\_density\_meas.
### <a name="_exptl_crystal_description"></a>\_exptl\_crystal\_description
A description of the quality and habit of the crystal.
The crystal dimensions should not normally be reported here;
use instead \_exptl\_crystal\_size\_ for the gross dimensions of
the crystal and \_exptl\_crystal\_face\_ to describe the
relationship between individual faces.
### <a name="_exptl_crystal_F_000"></a>\_exptl\_crystal\_F\_000
The effective number of electrons in the crystal unit cell
contributing to F(000). This may contain dispersion contributions
and is calculated as
F(000) = [ (sum f~r~)^2^ + (sum f~i~)^2^ ]^1/2^
f~r~ = real part of the scattering factors at theta = 0
f~i~ = imaginary part of the scattering factors at theta = 0
the sum is taken over each atom in the unit cell
### <a name="_exptl_crystal_id"></a>\_exptl\_crystal\_id
Code identifying each crystal if multiple crystals are used. It
is used to link with \_diffrn\_refln\_crystal\_id in the intensity
measurements and with \_refln\_crystal\_id in the \_refln\_ list.
### <a name="_exptl_crystal_preparation"></a>\_exptl\_crystal\_preparation
Details of crystal growth and preparation of the crystal (e.g.
mounting) prior to the intensity measurements.
### <a name="_exptl_crystal_pressure_history"></a>\_exptl\_crystal\_pressure\_history
Relevant details concerning the pressure history of the
sample.
### <a name="_exptl_crystal_recrystallization_method"></a>\_exptl\_crystal\_recrystallization\_method
Describes the method used to recrystallize the sample.
Sufficient details should be given for the procedure to be
repeated. The temperature or temperatures should be given as
well as details of the solvent, flux or carrier gas with
concentrations or pressures and ambient atmosphere.
### <a name="_exptl_crystal_size_length"></a>\_exptl\_crystal\_size\_length
The maximum, medial and minimum dimensions in millimetres of
the crystal. If the crystal is a sphere, then the \*\_rad item is
its radius. If the crystal is a cylinder, then the \*\_rad item
is its radius and the \*\_length item is its length. These may
appear in a list with \_exptl\_crystal\_id if multiple crystals
are used in the experiment.
Units: millimetres
### <a name="_exptl_crystal_thermal_history"></a>\_exptl\_crystal\_thermal\_history
Relevant details concerning the thermal history of the
sample.
## <a name="EXPTL_CRYSTAL_FACE"></a>EXPTL\_CRYSTAL\_FACE
Data items in the EXPTL\_CRYSTAL\_FACE category record details
of the crystal faces.
### <a name="_exptl_crystal_face_diffr_chi"></a>\_exptl\_crystal\_face\_diffr\_chi
The goniometer angle settings in degrees when the perpendicular
to the specified crystal face is aligned along a specified
direction (e.g. the bisector of the incident and reflected beams
in an optical goniometer).
Units: degrees
### <a name="_exptl_crystal_face_index_h"></a>\_exptl\_crystal\_face\_index\_h
Miller indices of the crystal face associated with the value
\_exptl\_crystal\_face\_perp\_dist.
### <a name="_exptl_crystal_face_perp_dist"></a>\_exptl\_crystal\_face\_perp\_dist
The perpendicular distance in millimetres from the face to the
centre of rotation of the crystal.
Units: millimetres
## <a name="GEOM"></a>GEOM
Data items in the GEOM and related (GEOM\_ANGLE,
GEOM\_BOND, GEOM\_CONTACT, GEOM\_HBOND and GEOM\_TORSION)
categories record details about the molecular and crystal
geometry as calculated from the ATOM,
CELL and SYMMETRY data.
Geometry data are usually redundant, in that they can be
calculated from other more fundamental quantities in the data
block. However, they serve the dual purposes of providing a
check on the correctness of both sets of data and of enabling
the most important geometric data to be identified for
publication by setting the appropriate publication flag.
### <a name="_geom_special_details"></a>\_geom\_special\_details
The description of geometrical information not covered by the
existing data names in the geometry categories, such as
least-squares planes.
## <a name="GEOM_ANGLE"></a>GEOM\_ANGLE
Data items in the GEOM\_ANGLE category record details about the
bond angles as calculated from the ATOM,
CELL and SYMMETRY data.
### <a name="_geom_angle"></a>\_geom\_angle
Angle in degrees defined by the three sites
\_geom\_angle\_atom\_site\_label\_1, \*\_2 and \*\_3. The site at \*\_2
is at the apex of the angle.
Units: degrees
### <a name="_geom_angle_atom_site_label_1"></a>\_geom\_angle\_atom\_site\_label\_1
The labels of the three atom sites which define the angle
given by \_geom\_angle. These must match labels specified as
\_atom\_site\_label in the atom list. Label 2 identifies the site at
the apex of the angle.
### <a name="_geom_angle_publ_flag"></a>\_geom\_angle\_publ\_flag
This code signals whether the angle is referred to in a
publication or should be placed in a table of significant
angles.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>no</td><td>do not include angle in special list</td></tr>
<tr><td>n</td><td>abbreviation for "no"</td></tr>
<tr><td>yes</td><td>do include angle in special list</td></tr>
<tr><td>y</td><td>abbreviation for "yes"</td></tr>
</table>
### <a name="_geom_angle_site_symmetry_1"></a>\_geom\_angle\_site\_symmetry\_1
The symmetry code of each atom site as the symmetry-equivalent
position number 'n' and the cell translation number 'klm'.
These numbers are combined to form the code 'n klm' or n\_klm.
The character string n\_klm is composed as follows:
n refers to the symmetry operation that is applied to the
coordinates stored in \_atom\_site\_fract\_x, \_atom\_site\_fract\_y
and \_atom\_site\_fract\_z. It must match a number given in
\_space\_group\_symop\_id.
k, l and m refer to the translations that are subsequently
applied to the symmetry-transformed coordinates to generate
the atom used in calculating the angle. These translations
(x,y,z) are related to (k,l,m) by the relations
k = 5 + x
l = 5 + y
m = 5 + z
By adding 5 to the translations, the use of negative numbers
is avoided.
## <a name="GEOM_BOND"></a>GEOM\_BOND
Data items in the GEOM\_BOND category record details about
bonds as calculated from the ATOM, CELL
and SYMMETRY data.
### <a name="_geom_bond_atom_site_label_1"></a>\_geom\_bond\_atom\_site\_label\_1
The labels of two atom sites that form a bond. These must match
labels specified as \_atom\_site\_label in the atom list.
### <a name="_geom_bond_distance"></a>\_geom\_bond\_distance
The intramolecular bond distance in angstroms.
Units: angstroms
### <a name="_geom_bond_multiplicity"></a>\_geom\_bond\_multiplicity
The number of times the given bond appears in the environment
of the atoms labelled \_geom\_bond\_atom\_site\_label\_1. In cases
where the full list of bonds is given, one of the series of
equivalent bonds may be assigned the appropriate multiplicity
while the others are assigned a value of 0.
### <a name="_geom_bond_publ_flag"></a>\_geom\_bond\_publ\_flag
This code signals whether the bond distance is referred to in a
publication or should be placed in a list of significant bond
distances.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>no</td><td>do not include bond in special list</td></tr>
<tr><td>n</td><td>abbreviation for "no"</td></tr>
<tr><td>yes</td><td>do include bond in special list</td></tr>
<tr><td>y</td><td>abbreviation for "yes"</td></tr>
</table>
### <a name="_geom_bond_site_symmetry_1"></a>\_geom\_bond\_site\_symmetry\_1
The symmetry code of each atom site as the symmetry-equivalent
position number 'n' and the cell translation number 'klm'.
These numbers are combined to form the code 'n klm' or n\_klm.
The character string n\_klm is composed as follows:
n refers to the symmetry operation that is applied to the
coordinates stored in \_atom\_site\_fract\_x, \_atom\_site\_fract\_y
and \_atom\_site\_fract\_z. It must match a number given in
\_space\_group\_symop\_id.
k, l and m refer to the translations that are subsequently
applied to the symmetry-transformed coordinates to generate
the atom used in calculating the bond. These translations
(x,y,z) are related to (k,l,m) by the relations
k = 5 + x
l = 5 + y
m = 5 + z
By adding 5 to the translations, the use of negative numbers
is avoided.
### <a name="_geom_bond_valence"></a>\_geom\_bond\_valence
The bond valence calculated from \_geom\_bond\_distance.
## <a name="GEOM_CONTACT"></a>GEOM\_CONTACT
Data items in the GEOM\_CONTACT category record details about
interatomic contacts as calculated from the
ATOM, CELL and SYMMETRY data.
### <a name="_geom_contact_atom_site_label_1"></a>\_geom\_contact\_atom\_site\_label\_1
The labels of two atom sites that are within contact distance.
The labels must match \_atom\_site\_label codes in the atom list.
### <a name="_geom_contact_distance"></a>\_geom\_contact\_distance
The interatomic contact distance in angstroms.
Units: angstroms
### <a name="_geom_contact_publ_flag"></a>\_geom\_contact\_publ\_flag
This code signals whether the contact distance is referred to
in a publication or should be placed in a list of significant
contact distances.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>no</td><td>do not include distance in special list</td></tr>
<tr><td>n</td><td>abbreviation for "no"</td></tr>
<tr><td>yes</td><td>do include distance in special list</td></tr>
<tr><td>y</td><td>abbreviation for "yes"</td></tr>
</table>
### <a name="_geom_contact_site_symmetry_1"></a>\_geom\_contact\_site\_symmetry\_1
The symmetry code of each atom site as the symmetry-equivalent
position number 'n' and the cell translation number 'klm'.
These numbers are combined to form the code 'n klm' or n\_klm.
The character string n\_klm is composed as follows:
n refers to the symmetry operation that is applied to the
coordinates stored in \_atom\_site\_fract\_x, \_atom\_site\_fract\_y
and \_atom\_site\_fract\_z. It must match a number given in
\_space\_group\_symop\_id.
k, l and m refer to the translations that are subsequently
applied to the symmetry-transformed coordinates to generate
the atom used in calculating the contact. These translations
(x,y,z) are related to (k,l,m) by the relations
k = 5 + x
l = 5 + y
m = 5 + z
By adding 5 to the translations, the use of negative numbers
is avoided.
## <a name="GEOM_HBOND"></a>GEOM\_HBOND
Data items in the GEOM\_HBOND category record details about
hydrogen bonds as calculated from the ATOM,
CELL and SYMMETRY data.
### <a name="_geom_hbond_angle_DHA"></a>\_geom\_hbond\_angle\_DHA
Angle in degrees defined by the three sites
\_geom\_hbond\_atom\_site\_label\_D, \*\_H and \*\_A. The site at \*\_H
(the hydrogen atom participating in the interaction) is at
the apex of the angle.
Units: degrees
### <a name="_geom_hbond_atom_site_label_D"></a>\_geom\_hbond\_atom\_site\_label\_D
The labels of three atom sites (respectively, the donor atom,
hydrogen atom and acceptor atom) participating in a hydrogen
bond. These must match labels specified as \_atom\_site\_label
in the atom list.
### <a name="_geom_hbond_distance_DH"></a>\_geom\_hbond\_distance\_DH
Distances in angstroms between the donor and hydrogen (\*\_DH),
hydrogen and acceptor (\*\_HA) and donor and acceptor (\*\_DA)
sites in a hydrogen bond.
Units: angstroms
### <a name="_geom_hbond_publ_flag"></a>\_geom\_hbond\_publ\_flag
This code signals whether the hydrogen-bond information
is referred to in a publication or should be placed in a
table of significant hydrogen-bond geometry.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>no</td><td>do not include bond in special list</td></tr>
<tr><td>n</td><td>abbreviation for "no"</td></tr>
<tr><td>yes</td><td>do include bond in special list</td></tr>
<tr><td>y</td><td>abbreviation for "yes"</td></tr>
</table>
### <a name="_geom_hbond_site_symmetry_D"></a>\_geom\_hbond\_site\_symmetry\_D
The symmetry code of each atom site as the symmetry-equivalent
position number 'n' and the cell translation number 'klm'.
These numbers are combined to form the code 'n klm' or n\_klm.
The character string n\_klm is composed as follows:
n refers to the symmetry operation that is applied to the
coordinates stored in \_atom\_site\_fract\_x, \_atom\_site\_fract\_y
and \_atom\_site\_fract\_z. It must match a number given in
\_space\_group\_symop\_id.
k, l and m refer to the translations that are subsequently
applied to the symmetry-transformed coordinates to generate
the atom used in calculating the hydrogen bond. These
translations (x,y,z) are related to (k,l,m) by the relations
k = 5 + x
l = 5 + y
m = 5 + z
By adding 5 to the translations, the use of negative numbers
is avoided.
## <a name="GEOM_TORSION"></a>GEOM\_TORSION
Data items in the GEOM\_TORSION category record details about
interatomic torsion angles as calculated from
the ATOM, CELL and SYMMETRY data.
### <a name="_geom_torsion"></a>\_geom\_torsion
The torsion angle in degrees bounded by the four atom sites
identified by the \_geom\_torsion\_atom\_site\_label\_ codes. These
must match labels specified as \_atom\_site\_label in the atom list.
The torsion-angle definition should be that of Klyne and Prelog.
Ref: Klyne, W. & Prelog, V. (1960). Experientia, 16, 521-523.
Units: degrees
### <a name="_geom_torsion_atom_site_label_1"></a>\_geom\_torsion\_atom\_site\_label\_1
The labels of the four atom sites which define the torsion angle
specified by \_geom\_torsion. These must match codes specified as
\_atom\_site\_label in the atom list. The torsion-angle definition
should be that of Klyne and Prelog. The vector direction
\*\_label\_2 to \*\_label\_3 is the viewing direction, and the torsion
angle is the angle of twist required to superimpose the
projection of the vector between site 2 and site 1 onto the
projection of the vector between site 3 and site 4. Clockwise
torsions are positive, anticlockwise torsions are negative.
Ref: Klyne, W. & Prelog, V. (1960). Experientia, 16, 521-523.
### <a name="_geom_torsion_publ_flag"></a>\_geom\_torsion\_publ\_flag
This code signals whether the torsion angle is referred to in a
publication or should be placed in a table of significant
torsion angles.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>no</td><td>do not include angle in special list</td></tr>
<tr><td>n</td><td>abbreviation for "no"</td></tr>
<tr><td>yes</td><td>do include angle in special list</td></tr>
<tr><td>y</td><td>abbreviation for "yes"</td></tr>
</table>
### <a name="_geom_torsion_site_symmetry_1"></a>\_geom\_torsion\_site\_symmetry\_1
The symmetry code of each atom site as the symmetry-equivalent
position number 'n' and the cell translation number 'klm'.
These numbers are combined to form the code 'n klm' or n\_klm.
The character string n\_klm is composed as follows:
n refers to the symmetry operation that is applied to the
coordinates stored in \_atom\_site\_fract\_x, \_atom\_site\_fract\_y
and \_atom\_site\_fract\_z. It must match a number given in
\_space\_group\_symop\_id.
k, l and m refer to the translations that are subsequently
applied to the symmetry-transformed coordinates to generate
the atom used in calculating the angle. These translations
(x,y,z) are related to (k,l,m) by the relations
k = 5 + x
l = 5 + y
m = 5 + z
By adding 5 to the translations, the use of negative numbers
is avoided.
## <a name="JOURNAL"></a>JOURNAL
Data items in the JOURNAL category record details about the
book-keeping by the journal staff when processing
a CIF submitted for publication.
The creator of a CIF will not normally specify these data items.
The data names are not defined in the dictionary because they are
for journal use only.
### <a name="_journal_coden_ASTM"></a>\_journal\_coden\_ASTM
Data items specified by the journal staff.
## <a name="JOURNAL_INDEX"></a>JOURNAL\_INDEX
Data items in the JOURNAL\_INDEX category are used to list
terms used to generate the journal indexes.
The creator of a CIF will not normally specify these data items.
### <a name="_journal_index_subterm"></a>\_journal\_index\_subterm
Indexing terms supplied by the journal staff.
## <a name="PUBL"></a>PUBL
Data items in the PUBL category are used when submitting a
manuscript for publication. They refer either to the paper as
a whole, or to specific named elements within a paper (such as
the title and abstract, or the Comment and Experimental
sections of Acta Crystallographica Section C). The data items
in the PUBL\_BODY category should be used for the text
of other submissions. Typically, each journal will
supply a list of the specific items it requires in its Notes
for Authors.
### <a name="_publ_contact_author"></a>\_publ\_contact\_author
The name and address of the author submitting the manuscript and
data block. This is the person contacted by the journal
editorial staff. It is preferable to use the separate data items
\_publ\_contact\_author\_name and \_publ\_contact\_author\_address.
### <a name="_publ_contact_author_address"></a>\_publ\_contact\_author\_address
The address of the author submitting the manuscript and
data block. This is the person contacted by the journal
editorial staff.
### <a name="_publ_contact_author_email"></a>\_publ\_contact\_author\_email
E-mail address in a form recognizable to international networks.
The format of e-mail addresses is given in Section 3.4, Address
Specification, of Internet Message Format, RFC 2822, P. Resnick
(Editor), Network Standards Group, April 2001.
### <a name="_publ_contact_author_fax"></a>\_publ\_contact\_author\_fax
Facsimile telephone number of the author submitting the
manuscript and data block.
The recommended style is the international dialing
prefix, followed by the area code in parentheses, followed by
the local number with no spaces. The earlier convention of
including the international dialing prefix in parentheses is
no longer recommended.
### <a name="_publ_contact_author_id_iucr"></a>\_publ\_contact\_author\_id\_iucr
Identifier in the IUCr contact database of the author
submitting the manuscript and data block. This identifier may
be available from the World Directory of Crystallographers
([http://wdc.iucr.org](http://wdc.iucr.org)).
### <a name="_publ_contact_author_name"></a>\_publ\_contact\_author\_name
The name of the author submitting the manuscript and
data block. This is the person contacted by the journal
editorial staff.
### <a name="_publ_contact_author_phone"></a>\_publ\_contact\_author\_phone
Telephone number of the author submitting the manuscript and
data block.
The recommended style is the international dialing
prefix, followed by the area code in parentheses, followed by the
local number and any extension number prefixed by 'x',
with no spaces. The earlier convention of including
the international dialing prefix in parentheses is no longer
recommended.
### <a name="_publ_contact_letter"></a>\_publ\_contact\_letter
A letter submitted to the journal editor by the contact author.
### <a name="_publ_manuscript_creation"></a>\_publ\_manuscript\_creation
A description of the word-processor package and computer used to
create the word-processed manuscript stored as
\_publ\_manuscript\_processed.
### <a name="_publ_manuscript_processed"></a>\_publ\_manuscript\_processed
The full manuscript of a paper (excluding possibly the figures
and the tables) output in ASCII characters from a word processor.
Information about the generation of this data item must be
specified in the data item \_publ\_manuscript\_creation.
### <a name="_publ_manuscript_text"></a>\_publ\_manuscript\_text
The full manuscript of a paper (excluding figures and possibly
the tables) output as standard ASCII text.
### <a name="_publ_requested_category"></a>\_publ\_requested\_category
The category of paper submitted. For submission to Acta
Crystallographica Section C or Acta Crystallographica
Section E, ONLY those codes indicated for use with those
journals should be used.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>FA</td><td>Full article</td></tr>
<tr><td>FI</td><td>Full submission - inorganic (Acta C)</td></tr>
<tr><td>FO</td><td>Full submission - organic (Acta C)</td></tr>
<tr><td>FM</td><td>Full submission - metal-organic (Acta C)</td></tr>
<tr><td>CI</td><td>CIF-access paper - inorganic (Acta C) (no longer in use)</td></tr>
<tr><td>CO</td><td>CIF-access paper - organic (Acta C) (no longer in use)</td></tr>
<tr><td>CM</td><td>CIF-access paper - metal-organic (Acta C) (no longer in use)</td></tr>
<tr><td>EI</td><td>Electronic submission - inorganic (Acta E)</td></tr>
<tr><td>EO</td><td>Electronic submission - organic (Acta E)</td></tr>
<tr><td>EM</td><td>Electronic submission - metal-organic (Acta E)</td></tr>
<tr><td>QI</td><td>Inorganic compounds (Acta E)</td></tr>
<tr><td>QO</td><td>Organic compounds (Acta E)</td></tr>
<tr><td>QM</td><td>Metal-organic compounds (Acta E)</td></tr>
<tr><td>AD</td><td>Addenda and Errata (Acta C, Acta E)</td></tr>
<tr><td>SC</td><td>Short communication</td></tr>
</table>
### <a name="_publ_requested_coeditor_name"></a>\_publ\_requested\_coeditor\_name
The name of the co-editor whom the authors would like to
handle the submitted manuscript.
### <a name="_publ_requested_journal"></a>\_publ\_requested\_journal
The name of the journal to which the manuscript is being
submitted.
### <a name="_publ_section_title"></a>\_publ\_section\_title
The sections of a manuscript if submitted in parts. As
an alternative, see \_publ\_manuscript\_text and
\_publ\_manuscript\_processed.
The \_publ\_section\_exptl\_prep, \_publ\_section\_exptl\_refinement
and \_publ\_section\_exptl\_solution items are preferred for
separating the chemical preparation, refinement and structure
solution aspects of the experimental description.
## <a name="PUBL_AUTHOR"></a>PUBL\_AUTHOR
Data items in the PUBL\_AUTHOR category record details of
the authors of a manuscript submitted for publication.
### <a name="_publ_author_address"></a>\_publ\_author\_address
The address of a publication author. If there is more than one
author, this will be looped with \_publ\_author\_name.
### <a name="_publ_author_email"></a>\_publ\_author\_email
The e-mail address of a publication author. If there is more
than one author, this will be looped with \_publ\_author\_name.
The format of e-mail addresses is given in Section 3.4, Address
Specification, of Internet Message Format, RFC 2822, P. Resnick
(Editor), Network Standards Group, April 2001.
### <a name="_publ_author_footnote"></a>\_publ\_author\_footnote
A footnote accompanying an author's name in the list of authors
of a paper. Typically indicates sabbatical address, additional
affiliations or date of decease.
### <a name="_publ_author_id_iucr"></a>\_publ\_author\_id\_iucr
Identifier in the IUCr contact database of a publication
author. This identifier may be available from the World
Directory of Crystallographers ([http://wdc.iucr.org](http://wdc.iucr.org)).
### <a name="_publ_author_name"></a>\_publ\_author\_name
The name of a publication author. If there are multiple authors,
this will be looped with \_publ\_author\_address. The family
name(s), followed by a comma and including any dynastic
components, precedes the first names or initials.
## <a name="PUBL_BODY"></a>PUBL\_BODY
Data items in the PUBL\_BODY category permit the labelling of
different text sections within the body of a paper.
Note that these should not be used in a paper which has
a standard format with sections tagged by specific data names
(such as in Acta Crystallographica Section C). Typically,
each journal will supply a list of the specific items it
requires in its Notes for Authors.
### <a name="_publ_body_contents"></a>\_publ\_body\_contents
A text section of a paper.
### <a name="_publ_body_element"></a>\_publ\_body\_element
The functional role of the associated text section.
Values:
* section
* subsection
* subsubsection
* appendix
* footnote
### <a name="_publ_body_format"></a>\_publ\_body\_format
Code indicating the appropriate typesetting conventions
for accented characters and special symbols in the text
section.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>ascii</td><td>no coding for special symbols</td></tr>
<tr><td>cif</td><td>CIF convention</td></tr>
<tr><td>latex</td><td>LaTeX</td></tr>
<tr><td>rtf</td><td>Rich Text Format</td></tr>
<tr><td>sgml</td><td>SGML (ISO 8879)</td></tr>
<tr><td>tex</td><td>TeX</td></tr>
<tr><td>troff</td><td>troff or nroff</td></tr>
</table>
### <a name="_publ_body_label"></a>\_publ\_body\_label
Code identifying the section of text. The combination of this
with \_publ\_body\_element must be unique.
### <a name="_publ_body_title"></a>\_publ\_body\_title
Title of the associated section of text.
## <a name="PUBL_MANUSCRIPT_INCL"></a>PUBL\_MANUSCRIPT\_INCL
Data items in the PUBL\_MANUSCRIPT\_INCL category allow
the authors of a manuscript submitted for publication to list
data names that should be added to the standard request list
used by the journal printing software. Although these fields are
primarily intended to identify CIF data items that the author
wishes to include in a published paper, they can also be used
to identify data names created so that non-CIF items can be
included in the publication. Note that \*\_item names MUST be
enclosed in single quotes.
### <a name="_publ_manuscript_incl_extra_defn"></a>\_publ\_manuscript\_incl\_extra\_defn
Flags whether the corresponding data item marked for inclusion
in a journal request list is a standard CIF definition or not.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>no</td><td>not a standard CIF data name</td></tr>
<tr><td>n</td><td>abbreviation for "no"</td></tr>
<tr><td>yes</td><td>a standard CIF data name</td></tr>
<tr><td>y</td><td>abbreviation for "yes"</td></tr>
</table>
### <a name="_publ_manuscript_incl_extra_info"></a>\_publ\_manuscript\_incl\_extra\_info
A short note indicating the reason why the author wishes the
corresponding data item marked for inclusion in the journal
request list to be published.
### <a name="_publ_manuscript_incl_extra_item"></a>\_publ\_manuscript\_incl\_extra\_item
Specifies the inclusion of specific data into a manuscript
which are not normally requested by the journal. The values
of this item are the extra data names (which MUST be enclosed
in single quotes) that will be added to the journal request list.
## <a name="REFINE"></a>REFINE
Data items in the REFINE category record details about the
structure-refinement parameters.
### <a name="_refine_diff_density_max"></a>\_refine\_diff\_density\_max
The largest and smallest values and the root-mean-square
deviation, in electrons per angstrom cubed, of the final
difference electron density. The \*\_rms value is measured with
respect to the arithmetic mean density and is derived from
summations over each grid point in the asymmetric unit of
the cell. This quantity is useful for assessing the
significance of \*\_min and \*\_max values, and also for
defining suitable contour levels.
Units: electrons per cubic angstrom
### <a name="_refine_ls_abs_structure_details"></a>\_refine\_ls\_abs\_structure\_details
The nature of the absolute structure and how it was determined.
### <a name="_refine_ls_abs_structure_Flack"></a>\_refine\_ls\_abs\_structure\_Flack
The measure of absolute structure as defined by Flack (1983).
For centrosymmetric structures, the only permitted value, if the
data name is present, is 'inapplicable', represented by '.' .
For noncentrosymmetric structures, the value must lie in the
99.97% Gaussian confidence interval -3u =< x =< 1 + 3u and a
standard uncertainty (e.s.d.) u must be supplied. The
\_enumeration\_range of 0.0:1.0 is correctly interpreted as
meaning (0.0 - 3u) =< x =< (1.0 + 3u).
Ref: Flack, H. D. (1983). Acta Cryst. A39, 876-881.
### <a name="_refine_ls_abs_structure_Rogers"></a>\_refine\_ls\_abs\_structure\_Rogers
The measure of absolute structure as defined by Rogers (1981).
The value must lie in the 99.97% Gaussian confidence interval
-1 -3u =< η =< 1 + 3u and a standard uncertainty (e.s.d.) u must
be supplied. The \_enumeration\_range of -1.0:1.0 is correctly
interpreted as meaning (-1.0 - 3u) =< η =< (1.0 + 3u).
Ref: Rogers, D. (1981). Acta Cryst. A37, 734-741.
### <a name="_refine_ls_d_res_high"></a>\_refine\_ls\_d\_res\_high
The smallest value in angstroms of the interplanar spacings
of the reflections used in the refinement. This is called
the highest resolution.
Units: angstroms
### <a name="_refine_ls_d_res_low"></a>\_refine\_ls\_d\_res\_low
The largest value in angstroms of the interplanar spacings
of the reflections used in the refinement. This is called
the lowest resolution.
Units: angstroms
### <a name="_refine_ls_extinction_coef"></a>\_refine\_ls\_extinction\_coef
The extinction coefficient used to calculate the correction
factor applied to the structure-factor data. The nature of the
extinction coefficient is given in the definitions of
\_refine\_ls\_extinction\_expression and
\_refine\_ls\_extinction\_method.
For the 'Zachariasen' method it is the r\* value; for the
'Becker-Coppens type 1 isotropic' method it is the 'g' value
and for 'Becker-Coppens type 2 isotropic' corrections it is
the 'rho' value. Note that the magnitude of these values is
usually of the order of 10000.
Ref: Becker, P. J. & Coppens, P. (1974). Acta Cryst. A30,
129-147, 148-153.
Zachariasen, W. H. (1967). Acta Cryst. 23, 558-564.
Larson, A. C. (1967). Acta Cryst. 23, 664-665.
### <a name="_refine_ls_extinction_expression"></a>\_refine\_ls\_extinction\_expression
A description of or reference to the extinction-correction
equation used to apply the data item \_refine\_ls\_extinction\_coef.
This information must be sufficient to reproduce the
extinction-correction factors applied to the structure factors.
### <a name="_refine_ls_extinction_method"></a>\_refine\_ls\_extinction\_method
A description of the extinction-correction method applied.
This description should
include information about the correction method, either
'Becker-Coppens' or 'Zachariasen'. The latter is sometimes
referred to as the 'Larson' method even though it employs
Zachariasen's formula.
The Becker-Coppens procedure is referred to as 'type 1' when
correcting secondary extinction dominated by the mosaic spread;
as 'type 2' when secondary extinction is dominated by particle
size and includes a primary extinction component; and as 'mixed'
when there is a mixture of types 1 and 2.
For the Becker-Coppens method, it is also necessary to set the
mosaic distribution as either 'Gaussian' or 'Lorentzian' and
the nature of the extinction as 'isotropic' or 'anisotropic'.
Note that if either the 'mixed' or 'anisotropic' corrections
are applied, the multiple coefficients cannot be contained in
\*\_extinction\_coef and must be listed in \_refine\_special\_details.
Ref: Becker, P. J. & Coppens, P. (1974). Acta Cryst. A30,
129-147, 148-153.
Zachariasen, W. H. (1967). Acta Cryst. 23, 558-564.
Larson, A. C. (1967). Acta Cryst. 23, 664-665.
### <a name="_refine_ls_F_calc_details"></a>\_refine\_ls\_F\_calc\_details
Details concerning the evaluation of the structure
factors using the expression given in
\_refine\_ls\_F\_calc\_formula.
### <a name="_refine_ls_F_calc_formula"></a>\_refine\_ls\_F\_calc\_formula
Analytical expression used to calculate the structure factors.
### <a name="_refine_ls_F_calc_precision"></a>\_refine\_ls\_F\_calc\_precision
This item gives an estimate of the precision resulting
from the numerical approximations made during the evaluation
of the structure factors using the expression given in
\_refine\_ls\_F\_calc\_formula following the method outlined
in \_refine\_ls\_F\_calc\_details. For X-ray diffraction the
result is given in electrons.
### <a name="_refine_ls_goodness_of_fit_all"></a>\_refine\_ls\_goodness\_of\_fit\_all
The least-squares goodness-of-fit parameter S for all
reflections after the final cycle of refinement.
Ideally, account should be taken of parameters restrained
in the least-squares refinement. See also
\_refine\_ls\_restrained\_S\_ definitions.
{ sum { w [ Y(obs) - Y(calc) ]^2^ } }^1/2^
S = { ———————————‒ }
{ Nref - Nparam }
Y(obs) = the observed coefficients
(see \_refine\_ls\_structure\_factor\_coef)
Y(calc) = the calculated coefficients
(see \_refine\_ls\_structure\_factor\_coef)
w = the least-squares reflection weight
[1/(u^2^)]
u = the standard uncertainty
Nref = the number of reflections used in the refinement
Nparam = the number of refined parameters
and the sum is taken over the specified reflections
### <a name="_refine_ls_goodness_of_fit_gt"></a>\_refine\_ls\_goodness\_of\_fit\_gt
The least-squares goodness-of-fit parameter S for
significantly intense reflections (see
\_reflns\_threshold\_expression) after the final cycle of
refinement. Ideally, account should be taken of parameters
restrained in the least-squares refinement. See also
\_refine\_ls\_restrained\_S\_ definitions.
{ sum { w [ Y(obs) - Y(calc) ]^2^ } }^1/2^
S = { ———————————‒ }
{ Nref - Nparam }
Y(obs) = the observed coefficients
(see \_refine\_ls\_structure\_factor\_coef)
Y(calc) = the calculated coefficients
(see \_refine\_ls\_structure\_factor\_coef)
w = the least-squares reflection weight
[1/(u^2^)]
u = standard uncertainty
Nref = the number of reflections used in the refinement
Nparam = the number of refined parameters
and the sum is taken over the specified reflections
### <a name="_refine_ls_goodness_of_fit_obs"></a>\_refine\_ls\_goodness\_of\_fit\_obs
The least-squares goodness-of-fit parameter S for observed
reflections (see \_reflns\_observed\_criterion) after the final
cycle of refinement. Ideally, account should be taken of
parameters restrained in the least-squares refinement. See also
\_refine\_ls\_restrained\_S\_ definitions.
{ sum { w [ Y(obs) - Y(calc) ]^2^ } }^1/2^
S = { ———————————‒ }
{ Nref - Nparam }
Y(obs) = the observed coefficients
(see \_refine\_ls\_structure\_factor\_coef)
Y(calc) = the calculated coefficients
(see \_refine\_ls\_structure\_factor\_coef)
w = the least-squares reflection weight
[1/(u^2^)]
u = standard uncertainty (e.s.d.)
Nref = the number of reflections used in the refinement
Nparam = the number of refined parameters
and the sum is taken over the specified reflections
### <a name="_refine_ls_goodness_of_fit_ref"></a>\_refine\_ls\_goodness\_of\_fit\_ref
The least-squares goodness-of-fit parameter S for all
reflections included in the refinement after the final cycle
of refinement. Ideally, account should be taken of parameters
restrained in the least-squares refinement. See also
\_refine\_ls\_restrained\_S\_ definitions.
{ sum | w | Y(obs) - Y(calc) |^2^ | }^1/2^
S = { ———————————‒ }
{ Nref - Nparam }
Y(obs) = the observed coefficients
(see \_refine\_ls\_structure\_factor\_coef)
Y(calc) = the calculated coefficients
(see \_refine\_ls\_structure\_factor\_coef)
w = the least-squares reflection weight
[1/(u^2^)]
u = standard uncertainty
Nref = the number of reflections used in the refinement
Nparam = the number of refined parameters
and the sum is taken over the specified reflections
### <a name="_refine_ls_hydrogen_treatment"></a>\_refine\_ls\_hydrogen\_treatment
Treatment of hydrogen atoms in the least-squares refinement.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>refall</td><td>refined all H-atom parameters</td></tr>
<tr><td>refxyz</td><td>refined H-atom coordinates only</td></tr>
<tr><td>refU</td><td>refined H-atom U's only</td></tr>
<tr><td>noref</td><td>no refinement of H-atom parameters</td></tr>
<tr><td>constr</td><td>H-atom parameters constrained</td></tr>
<tr><td>mixed</td><td>some constrained, some independent</td></tr>
<tr><td>undef</td><td>H-atom parameters not defined</td></tr>
</table>
### <a name="_refine_ls_matrix_type"></a>\_refine\_ls\_matrix\_type
Type of matrix used to accumulate the least-squares derivatives.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>full</td><td>full</td></tr>
<tr><td>fullcycle</td><td>full with fixed elements per cycle</td></tr>
<tr><td>atomblock</td><td>block diagonal per atom</td></tr>
<tr><td>userblock</td><td>user-defined blocks</td></tr>
<tr><td>diagonal</td><td>diagonal elements only</td></tr>
<tr><td>sparse</td><td>selected elements only</td></tr>
</table>
### <a name="_refine_ls_number_constraints"></a>\_refine\_ls\_number\_constraints
The number of constrained (non-refined or dependent) parameters
in the least-squares process. These may be due to symmetry or any
other constraint process (e.g. rigid-body refinement). See also
\_atom\_site\_constraints and \_atom\_site\_refinement\_flags. A general
description of constraints may appear in \_refine\_special\_details.
### <a name="_refine_ls_number_parameters"></a>\_refine\_ls\_number\_parameters
The number of parameters refined in the least-squares process.
If possible, this number should include some contribution from
the restrained parameters. The restrained parameters are
distinct from the constrained parameters (where one or more
parameters are linearly dependent on the refined value of
another). Least-squares restraints often depend on geometry or
energy considerations and this makes their direct contribution
to this number, and to the goodness-of-fit calculation,
difficult to assess.
### <a name="_refine_ls_number_reflns"></a>\_refine\_ls\_number\_reflns
The number of unique reflections contributing to the
least-squares refinement calculation.
### <a name="_refine_ls_number_restraints"></a>\_refine\_ls\_number\_restraints
The number of restrained parameters. These are parameters which
are not directly dependent on another refined parameter.
Restrained parameters often involve geometry or energy
dependencies.
See also \_atom\_site\_constraints and \_atom\_site\_refinement\_flags.
A general description of refinement constraints may appear in
\_refine\_special\_details.
### <a name="_refine_ls_R_factor_all"></a>\_refine\_ls\_R\_factor\_all
Residual factor for all reflections satisfying the
resolution limits established by \_refine\_ls\_d\_res\_high and
\_refine\_ls\_d\_res\_low. This is the conventional R
factor. See also \_refine\_ls\_wR\_factor\_ definitions.
sum | F(obs) - F(calc) |
R = ————————
sum | F(obs) |
F(obs) = the observed structure-factor amplitudes
F(calc) = the calculated structure-factor amplitudes
and the sum is taken over the specified reflections
### <a name="_refine_ls_R_factor_gt"></a>\_refine\_ls\_R\_factor\_gt
Residual factor for the reflections (with number given by
\_reflns\_number\_gt) judged significantly intense (i.e. satisfying
the threshold specified by \_reflns\_threshold\_expression)
and included in the refinement. The reflections also satisfy
the resolution limits established by \_refine\_ls\_d\_res\_high and
\_refine\_ls\_d\_res\_low. This is the conventional R
factor. See also \_refine\_ls\_wR\_factor\_ definitions.
sum | F(obs) - F(calc) |
R = ————————
sum | F(obs) |
F(obs) = the observed structure-factor amplitudes
F(calc) = the calculated structure-factor amplitudes
and the sum is taken over the specified reflections
### <a name="_refine_ls_R_factor_obs"></a>\_refine\_ls\_R\_factor\_obs
Residual factor for the reflections classified as 'observed'
(see \_reflns\_observed\_criterion) and included in the
refinement. The reflections also satisfy the resolution limits
established by \_refine\_ls\_d\_res\_high and
\_refine\_ls\_d\_res\_low. This is the conventional R
factor. See also \_refine\_ls\_wR\_factor\_ definitions.
sum | F(obs) - F(calc) |
R = ————————
sum | F(obs) |
F(obs) = the observed structure-factor amplitudes
F(calc) = the calculated structure-factor amplitudes
and the sum is taken over the specified reflections
### <a name="_refine_ls_R_Fsqd_factor"></a>\_refine\_ls\_R\_Fsqd\_factor
Residual factor R(Fsqd), calculated on the squared amplitudes
of the observed and calculated structure factors, for
significantly intense reflections (satisfying
\_reflns\_threshold\_expression) and included in the refinement.
The reflections also satisfy the resolution limits established
by \_refine\_ls\_d\_res\_high and \_refine\_ls\_d\_res\_low.
sum | F(obs)^2^ - F(calc)^2^ |
R(Fsqd) = ——————————-
sum F(obs)^2^
F(obs)^2^ = squares of the observed structure-factor amplitudes
F(calc)^2^ = squares of the calculated structure-factor
amplitudes
and the sum is taken over the specified reflections
### <a name="_refine_ls_R_I_factor"></a>\_refine\_ls\_R\_I\_factor
Residual factor R(I) for significantly intense reflections
(satisfying \_reflns\_threshold\_expression) and included in
the refinement.
This is most often calculated in Rietveld refinements against
powder data, where it is referred to as R~B~ or R~Bragg~.
sum | I(obs) - I(calc) |
R(I) = ————————
sum | I(obs) |
I(obs) = the net observed intensities
I(calc) = the net calculated intensities
and the sum is taken over the specified reflections
### <a name="_refine_ls_restrained_S_all"></a>\_refine\_ls\_restrained\_S\_all
The least-squares goodness-of-fit parameter S' for all
reflections after the final cycle of least-squares refinement.
This parameter explicitly includes the restraints applied in the
least-squares process. See also \_refine\_ls\_goodness\_of\_fit\_
definitions.
{sum { w [ Y(obs) - Y(calc) ]^2^ } }^1/2^
{ + sum~r~ { w~r~ [ P(calc) - P(targ) ]^2^ } }
S' = { ————————————————‒ }
{ N~ref~ + N~restr~ - N~param~ }
Y(obs) = the observed coefficients
(see \_refine\_ls\_structure\_factor\_coef)
Y(calc) = the calculated coefficients
(see \_refine\_ls\_structure\_factor\_coef)
w = the least-squares reflection weight
[1/square of standard uncertainty (e.s.d.)]
P(calc) = the calculated restraint values
P(targ) = the target restraint values
w~r~ = the restraint weight
N~ref~ = the number of reflections used in the refinement
(see \_refine\_ls\_number\_reflns)
N~restr~ = the number of restraints
(see \_refine\_ls\_number\_restraints)
N~param~ = the number of refined parameters
(see \_refine\_ls\_number\_parameters)
sum is taken over the specified reflections
sum~r~ is taken over the restraints
### <a name="_refine_ls_restrained_S_gt"></a>\_refine\_ls\_restrained\_S\_gt
The least-squares goodness-of-fit parameter S' for
significantly intense reflections (satisfying
\_reflns\_threshold\_expression) after the final cycle
of least-squares refinement. This parameter explicitly includes
the restraints applied in the least-squares process.
See also \_refine\_ls\_goodness\_of\_fit\_ definitions.
{sum { w [ Y(obs) - Y(calc) ]^2^ } }^1/2^
{ + sum~r~ { w~r~ [ P(calc) - P(targ) ]^2^ } }
S' = { ————————————————‒ }
{ N~ref~ + N~restr~ - N~param~ }
Y(obs) = the observed coefficients
(see \_refine\_ls\_structure\_factor\_coef)
Y(calc) = the calculated coefficients
(see \_refine\_ls\_structure\_factor\_coef)
w = the least-squares reflection weight
[1/square of standard uncertainty (e.s.d.)]
P(calc) = the calculated restraint values
P(targ) = the target restraint values
w~r~ = the restraint weight
N~ref~ = the number of reflections used in the refinement
(see \_refine\_ls\_number\_reflns)
N~restr~ = the number of restraints
(see \_refine\_ls\_number\_restraints)
N~param~ = the number of refined parameters
(see \_refine\_ls\_number\_parameters)
sum is taken over the specified reflections
sum~r~ is taken over the restraints
### <a name="_refine_ls_restrained_S_obs"></a>\_refine\_ls\_restrained\_S\_obs
The least-squares goodness-of-fit parameter S' for observed
reflections after the final cycle of least-squares refinement.
This parameter explicitly includes the restraints applied in the
least-squares process. See also \_refine\_ls\_goodness\_of\_fit\_
definitions.
{sum { w [ Y(obs) - Y(calc) ]^2^ } }^1/2^
{ + sum~r~ { w~r~ [ P(calc) - P(targ) ]^2^ } }
S' = { ————————————————‒ }
{ N~ref~ + N~restr~ - N~param~ }
Y(obs) = the observed coefficients
(see \_refine\_ls\_structure\_factor\_coef)
Y(calc) = the calculated coefficients
(see \_refine\_ls\_structure\_factor\_coef)
w = the least-squares reflection weight
[1/square of standard uncertainty (e.s.d.)]
P(calc) = the calculated restraint values
P(targ) = the target restraint values
w~r~ = the restraint weight
N~ref~ = the number of reflections used in the refinement
(see \_refine\_ls\_number\_reflns)
N~restr~ = the number of restraints
(see \_refine\_ls\_number\_restraints)
N~param~ = the number of refined parameters
(see \_refine\_ls\_number\_parameters)
sum is taken over the specified reflections
sum~r~ is taken over the restraints
### <a name="_refine_ls_shift/esd_max"></a>\_refine\_ls\_shift/esd\_max
The largest ratio of the final least-squares parameter
shift to the final standard uncertainty (s.u.,
formerly described as estimated standard deviation, e.s.d.).
### <a name="_refine_ls_shift/esd_mean"></a>\_refine\_ls\_shift/esd\_mean
The average ratio of the final least-squares parameter
shift to the final standard uncertainty (s.u.,
formerly described as estimated standard deviation, e.s.d.).
### <a name="_refine_ls_shift/su_max"></a>\_refine\_ls\_shift/su\_max
The largest ratio of the final least-squares parameter
shift to the final standard uncertainty.
### <a name="_refine_ls_shift/su_max_lt"></a>\_refine\_ls\_shift/su\_max\_lt
An upper limit for the largest ratio of the final
least-squares parameter shift to the final
standard uncertainty. This item is used when the largest
value of the shift divided by the final standard uncertainty
is too small to measure.
### <a name="_refine_ls_shift/su_mean"></a>\_refine\_ls\_shift/su\_mean
The average ratio of the final least-squares parameter
shift to the final standard uncertainty.
### <a name="_refine_ls_shift/su_mean_lt"></a>\_refine\_ls\_shift/su\_mean\_lt
An upper limit for the average ratio of the final
least-squares parameter shift to the
final standard uncertainty. This
item is used when the average value of the shift divided by
the final standard uncertainty is too small to measure.
### <a name="_refine_ls_structure_factor_coef"></a>\_refine\_ls\_structure\_factor\_coef
Structure-factor coefficient |F|, F^2^ or I used in the
least-squares refinement process.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>F</td><td>structure-factor magnitude</td></tr>
<tr><td>Fsqd</td><td>structure factor squared</td></tr>
<tr><td>Inet</td><td>net intensity</td></tr>
</table>
### <a name="_refine_ls_weighting_details"></a>\_refine\_ls\_weighting\_details
A description of special aspects of the weighting scheme used
in the least-squares refinement. Used to describe the weighting
when the value of \_refine\_ls\_weighting\_scheme is specified
as 'calc'.
### <a name="_refine_ls_weighting_scheme"></a>\_refine\_ls\_weighting\_scheme
The weighting scheme applied in the least-squares process. The
standard code may be followed by a description of the weight
(but see \_refine\_ls\_weighting\_details for a preferred approach).
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>sigma</td><td>based on measured s.u.'s</td></tr>
<tr><td>unit</td><td>unit or no weights applied</td></tr>
<tr><td>calc</td><td>calculated weights applied</td></tr>
</table>
### <a name="_refine_ls_wR_factor_all"></a>\_refine\_ls\_wR\_factor\_all
Weighted residual factors for all reflections.
The reflections also satisfy the resolution limits established
by \_refine\_ls\_d\_res\_high and \_refine\_ls\_d\_res\_low.
See also the \_refine\_ls\_R\_factor\_ definitions.
( sum w [ Y(obs) - Y(calc) ]^2^ )^1/2^
wR = ( —————————— )
( sum w Y(obs)^2^ )
Y(obs) = the observed amplitude specified by
\_refine\_ls\_structure\_factor\_coef
Y(calc) = the calculated amplitude specified by
\_refine\_ls\_structure\_factor\_coef
w = the least-squares weight
and the sum is taken over the specified reflections
### <a name="_refine_ls_wR_factor_gt"></a>\_refine\_ls\_wR\_factor\_gt
Weighted residual factors for significantly intense reflections
(satisfying \_reflns\_threshold\_expression) included in the
refinement. The reflections also satisfy the resolution
limits established by \_refine\_ls\_d\_res\_high and
\_refine\_ls\_d\_res\_low. See also the \_refine\_ls\_R\_factor\_
definitions.
( sum w [ Y(obs) - Y(calc) ]^2^ )^1/2^
wR = ( —————————— )
( sum w Y(obs)^2^ )
Y(obs) = the observed amplitude specified by
\_refine\_ls\_structure\_factor\_coef
Y(calc) = the calculated amplitude specified by
\_refine\_ls\_structure\_factor\_coef
w = the least-squares weight
and the sum is taken over the specified reflections
### <a name="_refine_ls_wR_factor_obs"></a>\_refine\_ls\_wR\_factor\_obs
Weighted residual factors for the reflections classified as
'observed' (see \_reflns\_observed\_criterion) and included
in the refinement. The reflections also satisfy the resolution
limits established by \_refine\_ls\_d\_res\_high and
\_refine\_ls\_d\_res\_low. See also the \_refine\_ls\_R\_factor\_
definitions.
( sum w [ Y(obs) - Y(calc) ]^2^ )^1/2^
wR = ( —————————— )
( sum w Y(obs)^2^ )
Y(obs) = the observed amplitude specified by
\_refine\_ls\_structure\_factor\_coef
Y(calc) = the calculated amplitude specified by
\_refine\_ls\_structure\_factor\_coef
w = the least-squares weight
and the sum is taken over the specified reflections
### <a name="_refine_ls_wR_factor_ref"></a>\_refine\_ls\_wR\_factor\_ref
Weighted residual factors for all reflections included in the
refinement. The reflections also satisfy the resolution
limits established by \_refine\_ls\_d\_res\_high and
\_refine\_ls\_d\_res\_low. See also the \_refine\_ls\_R\_factor\_
definitions.
( sum w [ Y(obs) - Y(calc) ]^2^ )^1/2^
wR = ( —————————— )
( sum w Y(obs)^2^ )
Y(obs) = the observed amplitude specified by
\_refine\_ls\_structure\_factor\_coef
Y(calc) = the calculated amplitude specified by
\_refine\_ls\_structure\_factor\_coef
w = the least-squares weight
and the sum is taken over the specified reflections
### <a name="_refine_special_details"></a>\_refine\_special\_details
Description of special aspects of the refinement process.
## <a name="REFINE_LS_CLASS"></a>REFINE\_LS\_CLASS
Data items in the REFINE\_LS\_CLASS category record details
(for each reflection class separately) about the reflections
used for the structure refinement.
### <a name="_refine_ls_class_code"></a>\_refine\_ls\_class\_code
The code identifying a certain reflection class. This code must
match a \_reflns\_class\_code.
### <a name="_refine_ls_class_d_res_high"></a>\_refine\_ls\_class\_d\_res\_high
For each reflection class, the highest resolution in angstroms
for the reflections used in the refinement. This is
the lowest d value in a reflection class.
Units: Angstroms
### <a name="_refine_ls_class_d_res_low"></a>\_refine\_ls\_class\_d\_res\_low
For each reflection class, the lowest resolution in angstroms
for the reflections used in the refinement. This is
the highest d value in a reflection class.
Units: Angstroms
### <a name="_refine_ls_class_R_factor_all"></a>\_refine\_ls\_class\_R\_factor\_all
For each reflection class, the residual factors for all
reflections, and for significantly intense reflections (see
\_reflns\_threshold\_expression), included in the refinement.
The reflections also satisfy the resolution limits established by
\_refine\_ls\_class\_d\_res\_high and \_refine\_ls\_class\_d\_res\_low.
This is the conventional R factor.
sum | F(obs) - F(calc) |
R = ————————
sum | F(obs) |
F(obs) = the observed structure-factor amplitudes
F(calc) = the calculated structure-factor amplitudes
and the sum is taken over the reflections of this class. See also
\_refine\_ls\_class\_wR\_factor\_all definitions.
### <a name="_refine_ls_class_R_Fsqd_factor"></a>\_refine\_ls\_class\_R\_Fsqd\_factor
For each reflection class, the residual factor R(F^2^) calculated
on the squared amplitudes of the observed and calculated
structure factors for the reflections judged significantly
intense (i.e. satisfying the threshold specified by
\_reflns\_threshold\_expression) and included in the refinement.
The reflections also satisfy the resolution limits established
by \_refine\_ls\_class\_d\_res\_high and \_refine\_ls\_class\_d\_res\_low.
sum | F(obs)^2^ - F(calc)^2^ |
R(Fsqd) = ——————————-
sum F(obs)^2^
F(obs)^2^ = squares of the observed structure-factor amplitudes
F(calc)^2^ = squares of the calculated structure-factor
amplitudes
and the sum is taken over the reflections of this class.
### <a name="_refine_ls_class_R_I_factor"></a>\_refine\_ls\_class\_R\_I\_factor
For each reflection class, the residual factor R(I) for the
reflections judged significantly intense (i.e. satisfying the
threshold specified by \_reflns\_threshold\_expression) and
included in the refinement.
This is most often calculated in Rietveld refinements
against powder data, where it is referred to as R~B~ or R~Bragg~.
sum | I(obs) - I(calc) |
R(I) = ————————
sum | I(obs) |
I(obs) = the net observed intensities
I(calc) = the net calculated intensities
and the sum is taken over the reflections of this class.
### <a name="_refine_ls_class_wR_factor_all"></a>\_refine\_ls\_class\_wR\_factor\_all
For each reflection class, the weighted residual factors for all
reflections included in the refinement. The reflections also
satisfy the resolution limits established by
\_refine\_ls\_class\_d\_res\_high and \_refine\_ls\_class\_d\_res\_low.
( sum w [ Y(obs) - Y(calc) ]^2^ )^1/2^
wR = ( —————————— )
( sum w Y(obs)^2^ )
Y(obs) = the observed amplitudes specified by
\_refine\_ls\_structure\_factor\_coef
Y(calc) = the calculated amplitudes specified by
\_refine\_ls\_structure\_factor\_coef
w = the least-squares weights
and the sum is taken over the reflections of this class. See
also \_refine\_ls\_class\_R\_factor\_ definitions.
## <a name="REFLN"></a>REFLN
Data items in the REFLN category record details about the
reflections used to determine the ATOM\_SITE data items.
The REFLN data items refer to individual reflections and must
be included in looped lists.
The REFLNS data items specify the parameters that apply to all
reflections. The REFLNS data items are not looped.
### <a name="_refln_A_calc"></a>\_refln\_A\_calc
The calculated and measured structure-factor component A
(in electrons for X-ray diffraction).
A =|F|cos(phase)
### <a name="_refln_B_calc"></a>\_refln\_B\_calc
The calculated and measured structure-factor component B
(in electrons for X-ray diffraction).
B =|F|sin(phase)
### <a name="_refln_class_code"></a>\_refln\_class\_code
The code identifying the class to which this reflection has been
assigned. This code must match a value of \_reflns\_class\_code.
Reflections may be grouped into classes for a variety of
purposes. For example, for modulated structures each reflection
class may be defined by the number m=sum|m~i~|, where the m~i~
are the integer coefficients that, in addition to h,k,l, index
the corresponding diffraction vector in the basis defined
for the reciprocal lattice.
### <a name="_refln_crystal_id"></a>\_refln\_crystal\_id
Code identifying each crystal if multiple crystals are used. Is
used to link with \_exptl\_crystal\_id in the \_exptl\_crystal\_ list.
### <a name="_refln_d_spacing"></a>\_refln\_d\_spacing
The d spacing in angstroms for this reflection. This is related
to the (sin theta)/lambda value by the expression
\_refln\_d\_spacing = 2/(\_refln\_sint/lambda)
Units: angstroms
### <a name="_refln_F_calc"></a>\_refln\_F\_calc
The calculated, measured and standard uncertainty (derived from
measurement) of the structure factors (in electrons for
X-ray diffraction).
### <a name="_refln_F_squared_calc"></a>\_refln\_F\_squared\_calc
Calculated, measured and estimated standard uncertainty (derived
from measurement) of the squared structure factors (in electrons
squared for X-ray diffraction).
### <a name="_refln_include_status"></a>\_refln\_include\_status
Classification of a reflection indicating its status with
respect to inclusion in the refinement and the calculation
of R factors.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>o</td><td>(lower-case letter o for 'observed')
satisfies _refine_ls_d_res_high
satisfies _refine_ls_d_res_low
exceeds _reflns_threshold_expression</td></tr>
<tr><td><</td><td>satisfies _refine_ls_d_res_high
satisfies _refine_ls_d_res_low
does not exceed
_reflns_threshold_expression</td></tr>
<tr><td>-</td><td>systematically absent reflection</td></tr>
<tr><td>x</td><td>unreliable measurement ‒ not used</td></tr>
<tr><td>h</td><td>does not satisfy _refine_ls_d_res_high</td></tr>
<tr><td>l</td><td>does not satisfy _refine_ls_d_res_low</td></tr>
</table>
### <a name="_refln_index_h"></a>\_refln\_index\_h
Miller indices of the reflection. The values of the Miller
indices in the REFLN category must correspond to the cell
defined by the cell lengths and cell angles in the CELL category.
### <a name="_refln_intensity_calc"></a>\_refln\_intensity\_calc
The calculated, measured and standard uncertainty (derived from
measurement) of the intensity, all in the same arbitrary units
as \_refln\_intensity\_meas.
### <a name="_refln_mean_path_length_tbar"></a>\_refln\_mean\_path\_length\_tbar
Mean path length in millimetres through the crystal for this
reflection.
Units: millimetres
### <a name="_refln_observed_status"></a>\_refln\_observed\_status
Classification of a reflection indicating its status with
respect to inclusion in the refinement and the calculation
of R factors.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>o</td><td>satisfies _refine_ls_d_res_high
satisfies _refine_ls_d_res_low
observed by _reflns_observed_criterion</td></tr>
<tr><td><</td><td>satisfies _refine_ls_d_res_high
satisfies _refine_ls_d_res_low
unobserved by _reflns_observed_criterion</td></tr>
<tr><td>-</td><td>systematically absent reflection</td></tr>
<tr><td>x</td><td>unreliable measurement ‒ not used</td></tr>
<tr><td>h</td><td>does not satisfy _refine_ls_d_res_high</td></tr>
<tr><td>l</td><td>does not satisfy _refine_ls_d_res_low</td></tr>
</table>
### <a name="_refln_phase_calc"></a>\_refln\_phase\_calc
The calculated structure-factor phase in degrees.
Units: degrees
### <a name="_refln_phase_meas"></a>\_refln\_phase\_meas
The measured structure-factor phase in degrees.
Units: degrees
### <a name="_refln_refinement_status"></a>\_refln\_refinement\_status
Status of a reflection in the structure-refinement process.
Values:
<table>
<tr><th>Value</th><th>Description</th></tr>
<tr><td>incl</td><td>included in ls process</td></tr>
<tr><td>excl</td><td>excluded from ls process</td></tr>
<tr><td>extn</td><td>excluded due to extinction</td></tr>
</table>
### <a name="_refln_scale_group_code"></a>\_refln\_scale\_group\_code
Code identifying the structure-factor scale. This code must
correspond to one of the \_reflns\_scale\_group\_code values.
### <a name="_refln_sint/lambda"></a>\_refln\_sint/lambda
The (sin theta)/lambda value in reciprocal angstroms for this
reflection.
Units: reciprocal angstroms
### <a name="_refln_symmetry_epsilon"></a>\_refln\_symmetry\_epsilon
The symmetry reinforcement factor corresponding to the number of
times the reflection indices are generated identically from the
space-group symmetry operations.
### <a name="_refln_symmetry_multiplicity"></a>\_refln\_symmetry\_multiplicity
The number of reflections symmetry-equivalent under the Laue
symmetry to the present reflection. In the Laue symmetry, Friedel
opposites (h k l and -h -k -l) are equivalent. Tables of
symmetry-equivalent reflections are available in International
Tables for Crystallography Volume A (2002), Chapter 10.1.
### <a name="_refln_wavelength"></a>\_refln\_wavelength
The mean wavelength in angstroms of the radiation used to measure
this reflection. This is an important parameter for data
collected using energy-dispersive detectors or the Laue method.
Units: angstroms
### <a name="_refln_wavelength_id"></a>\_refln\_wavelength\_id
Code identifying the wavelength in the \_diffrn\_radiation\_ list.
See \_diffrn\_radiation\_wavelength\_id.
## <a name="REFLNS"></a>REFLNS
Data items in the REFLNS category record details about the
reflections used to determine the ATOM\_SITE data items.
The REFLN data items refer to individual reflections and must
be included in looped lists.
The REFLNS data items specify the parameters that apply to all
reflections. The REFLNS data items are not looped.
### <a name="_reflns_d_resolution_high"></a>\_reflns\_d\_resolution\_high
The highest and lowest resolution in angstroms for the
reflections. These are the smallest and largest d values.
Units: angstroms
### <a name="_reflns_Friedel_coverage"></a>\_reflns\_Friedel\_coverage
The proportion of Friedel-related reflections present in
the number of 'independent' reflections specified by
the item \_reflns\_number\_total.
This proportion is calculated as the ratio:
[N(crystal class) - N(Laue symmetry)] / N(Laue symmetry)
where, working from the \_diffrn\_refln\_ list,
N(crystal class) is the number of reflections obtained on
averaging under the symmetry of the crystal class
N(Laue symmetry) is the number of reflections obtained on
averaging under the Laue symmetry.
Examples:
(a) For centrosymmetric structures, \_reflns\_Friedel\_coverage
is necessarily equal to 0.0 as the crystal class
is identical to the Laue symmetry.
(b) For whole-sphere data for a crystal in the space
group P1, \_reflns\_Friedel\_coverage is equal to 1.0,
as no reflection h k l is equivalent to -h -k -l
in the crystal class and all Friedel pairs
{h k l; -h -k -l} have been measured.
(c) For whole-sphere data in space group Pmm2,
\_reflns\_Friedel\_coverage will be < 1.0 because
although reflections h k l and
-h -k -l are not equivalent when h k l indices are
nonzero, they are when l=0.
(d) For a crystal in the space group Pmm2, measurements of the
two inequivalent octants h >= 0, k >=0, l lead to the
same value as in (c), whereas measurements of the
two equivalent octants h >= 0, k, l >= 0 will lead to
a value of zero for \_reflns\_Friedel\_coverage.
### <a name="_reflns_limit_h_max"></a>\_reflns\_limit\_h\_max
Miller indices limits for the reported reflections. These need
not be the same as the \_diffrn\_reflns\_limit\_ values.
### <a name="_reflns_number_gt"></a>\_reflns\_number\_gt
The number of reflections in the \_refln\_ list (not the
\_diffrn\_refln\_ list) that are significantly intense, satisfying
the criterion specified by \_reflns\_threshold\_expression. This may
include Friedel-equivalent reflections (i.e. those which are
symmetry-equivalent under the Laue symmetry but inequivalent
under the crystal class) according to the nature of the
structure and the procedures used. Special characteristics
of the reflections included in the \_refln\_ list should be given
in the item \_reflns\_special\_details.
### <a name="_reflns_number_observed"></a>\_reflns\_number\_observed
The number of 'observed' reflections in the \_refln\_ list (not
the \_diffrn\_refln\_ list). The observed reflections satisfy the
threshold criterion specified by \_reflns\_threshold\_expression
(or the deprecated item \_reflns\_observed\_criterion). They may
include Friedel-equivalent reflections according to the nature
of the structure and the procedures used. Special characteristics
of the reflections included in the \_refln\_ list should be given
in the item \_reflns\_special\_details.
### <a name="_reflns_number_total"></a>\_reflns\_number\_total
The total number of reflections in the \_refln\_ list (not the
\_diffrn\_refln\_ list). This may include Friedel-equivalent
reflections (i.e. those which are symmetry-equivalent under the
Laue symmetry but inequivalent under the crystal class)
according to the nature of the structure and the procedures
used. Special characteristics of the reflections included
in the \_refln\_ list should be given in the item
\_reflns\_special\_details.
### <a name="_reflns_observed_criterion"></a>\_reflns\_observed\_criterion
The criterion used to classify a reflection as 'observed'. This
criterion is usually expressed in terms of a sigma(I) or sigma(F)
threshold.
### <a name="_reflns_special_details"></a>\_reflns\_special\_details
Description of the properties of the reported reflection list
that are not given in other data items. In particular, this
should include information about the averaging (or not) of
symmetry-equivalent reflections including Friedel pairs.
### <a name="_reflns_threshold_expression"></a>\_reflns\_threshold\_expression
The threshold, usually based on multiples of u(I), u(F^2^)
or u(F), that serves to identify significantly intense
reflections, the number of which is given by \_reflns\_number\_gt.
These reflections are used in the calculation of
\_refine\_ls\_R\_factor\_gt.
## <a name="REFLNS_CLASS"></a>REFLNS\_CLASS
Data items in the REFLNS\_CLASS category record details, for
each reflection class, about the reflections used to determine
the structural parameters.
### <a name="_reflns_class_code"></a>\_reflns\_class\_code
The code identifying a certain reflection class.
### <a name="_reflns_class_d_res_high"></a>\_reflns\_class\_d\_res\_high
For each reflection class, the highest resolution in angstroms
for the reflections used in the refinement. This is the smallest
d value.
Units: Angstroms
### <a name="_reflns_class_d_res_low"></a>\_reflns\_class\_d\_res\_low
For each reflection class, the lowest resolution in angstroms
for the reflections used in the refinement. This is the largest
d value.
Units: Angstroms
### <a name="_reflns_class_description"></a>\_reflns\_class\_description
Description of each reflection class.
### <a name="_reflns_class_number_gt"></a>\_reflns\_class\_number\_gt
For each reflection class, the number of significantly intense
reflections (see \_reflns\_threshold\_expression) in the \_refln\_
list (not the \_diffrn\_refln\_ list). This may include Friedel-
equivalent reflections (i.e. those which are symmetry-equivalent
under the Laue symmetry but inequivalent under the crystal
class) according to the nature of the structure and the
procedures used. Special characteristics of the reflections
included in the \_refln\_ list should be given in the item
\_reflns\_special\_details.
### <a name="_reflns_class_number_total"></a>\_reflns\_class\_number\_total
For each reflection class, the total number of reflections
in the \_refln\_ list (not the \_diffrn\_refln\_ list). This may
include Friedel-equivalent reflections (i.e. those which are
symmetry-equivalent under the Laue symmetry but inequivalent
under the crystal class) according to the nature of the
structure and the procedures used. Special characteristics
of the reflections included in the \_refln\_ list should be given
in the item \_reflns\_special\_details.
### <a name="_reflns_class_R_factor_all"></a>\_reflns\_class\_R\_factor\_all
For each reflection class, the residual factors for all
reflections, and for significantly intense reflections (see
\_reflns\_threshold\_expression), included in the refinement.
The reflections also satisfy the resolution limits established by
\_reflns\_class\_d\_res\_high and \_reflns\_class\_d\_res\_low.
This is the conventional R factor.
sum | F(obs) - F(calc) |
R = ————————
sum | F(obs) |
F(obs) = the observed structure-factor amplitudes
F(calc) = the calculated structure-factor amplitudes
and the sum is taken over the reflections of this class. See also
\_reflns\_class\_wR\_factor\_all definitions.
### <a name="_reflns_class_R_Fsqd_factor"></a>\_reflns\_class\_R\_Fsqd\_factor
For each reflection class, the residual factor R(F^2^) calculated
on the squared amplitudes of the observed and calculated
structure factors, for the reflections judged significantly
intense (i.e. satisfying the threshold specified by
\_reflns\_threshold\_expression) and included in the refinement.
The reflections also satisfy the resolution limits established
by \_reflns\_class\_d\_res\_high and \_reflns\_class\_d\_res\_low.
sum | F(obs)^2^ - F(calc)^2^ |
R(Fsqd) = ——————————-
sum F(obs)^2^
F(obs)^2^ = squares of the observed structure-factor amplitudes
F(calc)^2^ = squares of the calculated structure-factor
amplitudes
and the sum is taken over the reflections of this class.
### <a name="_reflns_class_R_I_factor"></a>\_reflns\_class\_R\_I\_factor
For each reflection class, the residual factor R(I) for the
reflections judged significantly intense (i.e. satisfying the
threshold specified by \_reflns\_threshold\_expression) and
included in the refinement.
This is most often calculated in Rietveld refinements
against powder data, where it is referred to as R~B~ or R~Bragg~.
sum | I(obs) - I(calc) |
R(I) = ————————
sum | I(obs) |
I(obs) = the net observed intensities
I(calc) = the net calculated intensities
and the sum is taken over the reflections of this class.
### <a name="_reflns_class_wR_factor_all"></a>\_reflns\_class\_wR\_factor\_all
For each reflection class, the weighted residual factors for all
reflections included in the refinement. The reflections also
satisfy the resolution limits established by
\_reflns\_class\_d\_res\_high and \_reflns\_class\_d\_res\_low.
( sum w [ Y(obs) - Y(calc) ]^2^ )^1/2^
wR = ( —————————— )
( sum w Y(obs)^2^ )
Y(obs) = the observed amplitudes specified by
\_refine\_ls\_structure\_factor\_coef
Y(calc) = the calculated amplitudes specified by
\_refine\_ls\_structure\_factor\_coef
w = the least-squares weights
and the sum is taken over the reflections of this class. See
also \_reflns\_class\_R\_factor\_ definitions.
## <a name="REFLNS_SCALE"></a>REFLNS\_SCALE
Data items in the REFLNS\_SCALE category record details about
the structure-factor scales. They are referenced from within
the REFLN list through \_refln\_scale\_group\_code.
### <a name="_reflns_scale_group_code"></a>\_reflns\_scale\_group\_code
The code identifying a scale \_reflns\_scale\_meas\_. These are
linked to the \_refln\_ list by the \_refln\_scale\_group\_code. These
codes need not correspond to those in the \_diffrn\_scale\_ list.
### <a name="_reflns_scale_meas_F"></a>\_reflns\_scale\_meas\_F
Scales associated with \_reflns\_scale\_group\_code.
## <a name="REFLNS_SHELL"></a>REFLNS\_SHELL
Data items in the REFLNS\_SHELL category record details about
the reflections used to determine the ATOM\_SITE data items,
as broken down by shells of resolution.
### <a name="_reflns_shell_d_res_high"></a>\_reflns\_shell\_d\_res\_high
The highest resolution in angstroms for the reflections in
this shell. This is the smallest d value.
Units: angstroms
### <a name="_reflns_shell_d_res_low"></a>\_reflns\_shell\_d\_res\_low
The lowest resolution in angstroms for the
reflections in this shell. This is the largest d value.
Units: angstroms
### <a name="_reflns_shell_meanI_over_sigI_all"></a>\_reflns\_shell\_meanI\_over\_sigI\_all
The ratio of the mean of the intensities of all reflections
in this shell to the mean of the standard uncertainties of the
intensities of all reflections in the resolution shell.
### <a name="_reflns_shell_meanI_over_sigI_gt"></a>\_reflns\_shell\_meanI\_over\_sigI\_gt
The ratio of the mean of the intensities of the significantly
intense reflections (see \_reflns\_threshold\_expression) in
this shell to the mean of the standard uncertainties of the
intensities of the significantly intense reflections in the
resolution shell.
### <a name="_reflns_shell_meanI_over_sigI_obs"></a>\_reflns\_shell\_meanI\_over\_sigI\_obs
The ratio of the mean of the intensities of the reflections
classified as 'observed' (see \_reflns\_observed\_criterion) in
this shell to the mean of the standard uncertainties of the
intensities of the 'observed' reflections in the resolution
shell.
### <a name="_reflns_shell_meanI_over_uI_all"></a>\_reflns\_shell\_meanI\_over\_uI\_all
The ratio of the mean of the intensities of all reflections
in this shell to the mean of the standard uncertainties of the
intensities of all reflections in the resolution shell.
### <a name="_reflns_shell_meanI_over_uI_gt"></a>\_reflns\_shell\_meanI\_over\_uI\_gt
The ratio of the mean of the intensities of the significantly
intense reflections (see \_reflns\_threshold\_expression) in
this shell to the mean of the standard uncertainties of the
intensities of the significantly intense reflections in the
resolution shell.
### <a name="_reflns_shell_number_measured_all"></a>\_reflns\_shell\_number\_measured\_all
The total number of reflections measured for this
resolution shell.
### <a name="_reflns_shell_number_measured_gt"></a>\_reflns\_shell\_number\_measured\_gt
The number of significantly intense reflections
(see \_reflns\_threshold\_expression) measured for this
resolution shell.
### <a name="_reflns_shell_number_measured_obs"></a>\_reflns\_shell\_number\_measured\_obs
The number of reflections classified as 'observed'
(see \_reflns\_observed\_criterion) measured for this
resolution shell.
### <a name="_reflns_shell_number_possible"></a>\_reflns\_shell\_number\_possible
The number of unique reflections it is possible to measure in
this reflection shell.
### <a name="_reflns_shell_number_unique_all"></a>\_reflns\_shell\_number\_unique\_all
The total number of measured reflections resulting from
merging measured symmetry-equivalent reflections for this
resolution shell.
### <a name="_reflns_shell_number_unique_gt"></a>\_reflns\_shell\_number\_unique\_gt
The total number of significantly intense reflections
(see \_reflns\_threshold\_expression) resulting from merging
measured symmetry-equivalent reflections for this resolution
shell.
### <a name="_reflns_shell_number_unique_obs"></a>\_reflns\_shell\_number\_unique\_obs
The total number of reflections classified as
'observed' (see \_reflns\_observed\_criterion) resulting from
merging measured symmetry-equivalent reflections for this
resolution shell.
### <a name="_reflns_shell_percent_possible_all"></a>\_reflns\_shell\_percent\_possible\_all
The percentage of geometrically possible reflections
represented by all reflections measured for this
resolution shell.
### <a name="_reflns_shell_percent_possible_gt"></a>\_reflns\_shell\_percent\_possible\_gt
The percentage of geometrically possible reflections
represented by significantly intense reflections
(see \_reflns\_threshold\_expression) measured for this
resolution shell.
### <a name="_reflns_shell_percent_possible_obs"></a>\_reflns\_shell\_percent\_possible\_obs
The percentage of geometrically possible reflections
represented by reflections classified as 'observed'
(see \_reflns\_observed\_criterion) measured for this
resolution shell.
### <a name="_reflns_shell_Rmerge_F_all"></a>\_reflns\_shell\_Rmerge\_F\_all
The value of Rmerge(F) for all reflections in a given shell.
sum~i~ ( sum~j~ | F~j~ - <F> | )
Rmerge(F) = ——————————‒
sum~i~ ( sum~j~ <F> )
F~j~ = the amplitude of the jth observation of reflection i
<F> = the mean of the amplitudes of all observations of
reflection i
sum~i~ is taken over all reflections
sum~j~ is taken over all observations of each reflection.
### <a name="_reflns_shell_Rmerge_F_gt"></a>\_reflns\_shell\_Rmerge\_F\_gt
The value of Rmerge(F) for significantly intense reflections
(see \_reflns\_threshold\_expression) in a given shell.
sum~i~ ( sum~j~ | F~j~ - <F> | )
Rmerge(F) = ——————————‒
sum~i~ ( sum~j~ <F> )
F~j~ = the amplitude of the jth observation of reflection i
<F> = the mean of the amplitudes of all observations of
reflection i
sum~i~ is taken over all reflections
sum~j~ is taken over all observations of each reflection.
### <a name="_reflns_shell_Rmerge_F_obs"></a>\_reflns\_shell\_Rmerge\_F\_obs
The value of Rmerge(F) for reflections classified as 'observed'
(see \_reflns\_observed\_criterion) in a given shell.
sum~i~ ( sum~j~ | F~j~ - <F> | )
Rmerge(F) = ——————————‒
sum~i~ ( sum~j~ <F> )
F~j~ = the amplitude of the jth observation of reflection i
<F> = the mean of the amplitudes of all observations of
reflection i
sum~i~ is taken over all reflections
sum~j~ is taken over all observations of each reflection.
### <a name="_reflns_shell_Rmerge_I_all"></a>\_reflns\_shell\_Rmerge\_I\_all
The value of Rmerge(I) for all reflections in a given shell.
sum~i~ ( sum~j~ | I~j~ - <I> | )
Rmerge(I) = ——————————‒
sum~i~ ( sum~j~ <I> )
I~j~ = the intensity of the jth observation of reflection i
<I> = the mean of the intensities of all observations of
reflection i
sum~i~ is taken over all reflections
sum~j~ is taken over all observations of each reflection.
### <a name="_reflns_shell_Rmerge_I_gt"></a>\_reflns\_shell\_Rmerge\_I\_gt
The value of Rmerge(I) for significantly intense reflections
(see \_reflns\_threshold\_expression) in a given shell.
sum~i~ ( sum~j~ | I~j~ - <I> | )
Rmerge(I) = ——————————‒
sum~i~ ( sum~j~ <I> )
I~j~ = the intensity of the jth observation of reflection i
<I> = the mean of the intensities of all observations of
reflection i
sum~i~ is taken over all reflections
sum~j~ is taken over all observations of each reflection.
### <a name="_reflns_shell_Rmerge_I_obs"></a>\_reflns\_shell\_Rmerge\_I\_obs
The value of Rmerge(I) for reflections classified as 'observed'
(see \_reflns\_observed\_criterion) in a given shell.
sum~i~ ( sum~j~ | I~j~ - <I> | )
Rmerge(I) = ——————————‒
sum~i~ ( sum~j~ <I> )
I~j~ = the intensity of the jth observation of reflection i
<I> = the mean of the intensities of all observations of
reflection i
sum~i~ is taken over all reflections
sum~j~ is taken over all observations of each reflection.
## <a name="SPACE_GROUP"></a>SPACE\_GROUP
Contains all the data items that refer to the space group as a
whole, such as its name or crystal system. They may be looped,
for example, in a list of space groups and their properties.
Only a subset of the SPACE\_GROUP category items appear in the
core dictionary. The remainder are found in the symmetry CIF
dictionary.
Space-group types are identified by their number as given in
International Tables for Crystallography Vol. A. Specific
settings of the space groups can be identified either by their
Hall symbol or by specifying their symmetry operations.
The commonly used Hermann-Mauguin symbol determines the
space-group type uniquely but several different Hermann-Mauguin
symbols may refer to the same space-group type. A
Hermann-Mauguin symbol contains information on the choice of
the basis, but not on the choice of origin. Different formats
for the Hermann-Mauguin symbol are found in the symmetry CIF
dictionary.
### <a name="_space_group_crystal_system"></a>\_space\_group\_crystal\_system
The name of the system of geometric crystal classes of space
groups (crystal system) to which the space group belongs.
Note that rhombohedral space groups belong to the
trigonal system.
Values:
* triclinic
* monoclinic
* orthorhombic
* tetragonal
* trigonal
* hexagonal
* cubic
### <a name="_space_group_id"></a>\_space\_group\_id
This is an identifier needed if \_space\_group\_ items are looped.
### <a name="_space_group_IT_number"></a>\_space\_group\_IT\_number
The number as assigned in International Tables for
Crystallography Vol. A, specifying the proper affine class (i.e.
the orientation-preserving affine class) of space groups
(crystallographic space-group type) to which the space group
belongs. This number defines the space-group type but not
the coordinate system in which it is expressed.
### <a name="_space_group_name_H-M_alt"></a>\_space\_group\_name\_H-M\_alt
\_space\_group\_name\_H-M\_alt allows any Hermann-Mauguin symbol
to be given. The way in which this item is used is determined
by the user and in general is not intended to be interpreted by
computer. It may, for example, be used to give one of the
extended Hermann-Mauguin symbols given in Table 4.3.2.1 of
International Tables for Crystallography Vol. A (2002) or
a Hermann-Mauguin symbol for a conventional or unconventional
setting.
Each component of the space-group name is separated by a
space or an underscore. The use of a space is strongly
recommended. The underscore is only retained because it
was used in older files. It should not be
used in new CIFs. Subscripts should appear without special
symbols. Bars should be given as negative signs before the
numbers to which they apply.
The commonly used Hermann-Mauguin symbol determines the space-
group type uniquely but a given space-group type may be
described by more than one Hermann-Mauguin symbol. The space-
group type is best described using \_space\_group\_IT\_number.
The Hermann-Mauguin symbol may contain information on the
choice of basis, but not on the choice of origin. To
define the setting uniquely, use \_space\_group\_name\_Hall or
list the symmetry operations.
### <a name="_space_group_name_Hall"></a>\_space\_group\_name\_Hall
Space-group symbol defined by Hall.
Each component of the space-group name is separated by a
space or an underscore. The use of a space is strongly
recommended. The underscore is only retained because it
was used in older files. It should not be
used in new CIFs.
\_space\_group\_name\_Hall uniquely defines the space group and
its reference to a particular coordinate system.
Ref: Hall, S. R. (1981). Acta Cryst. A37, 517-525; erratum
(1981), A37, 921.
[See also International Tables for Crystallography,
Vol. B (2001), Chapter 1.4, Appendix 1.4.2]
## <a name="SPACE_GROUP_SYMOP"></a>SPACE\_GROUP\_SYMOP
Contains information about the symmetry operations of the
space group.
### <a name="_space_group_symop_id"></a>\_space\_group\_symop\_id
An arbitrary identifier that uniquely labels each symmetry
operation in the list.
In order for the defaults to work correctly, the identity
operation should have \_space\_group\_symop\_id or
\_symmetry\_equiv\_pos\_site\_id set to 1, and
\_space\_group\_symop\_operation\_xyz or
\_symmetry\_equiv\_pos\_as\_xyz set to x,y,z;
i.e. the operation labelled 1 should be the identity
operation.
### <a name="_space_group_symop_operation_xyz"></a>\_space\_group\_symop\_operation\_xyz
A parsable string giving one of the symmetry operations of the
space group in algebraic form. If W is a matrix representation
of the rotational part of the symmetry operation defined by the
positions and signs of x, y and z, and w is a column of
translations defined by fractions, an equivalent position
X' is generated from a given position X by the equation
X' = WX + w
(Note: X is used to represent bold\_italics\_x in International
Tables for Crystallography Vol. A, Part 5)
When a list of symmetry operations is given, it must contain
a complete set of coordinate representatives which generates
all the operations of the space group by the addition of
all primitive translations of the space group. Such
representatives are to be found as the coordinates of
the general-equivalent position in International Tables for
Crystallography Vol. A (2002), to which it is necessary to
add any centring translations shown above the
general-equivalent position.
That is to say, it is necessary to list explicitly all the
symmetry operations required to generate all the atoms in
the unit cell defined by the setting used.
In order for the defaults to work correctly, the identity
operation should have \_space\_group\_symop\_id or
\_symmetry\_equiv\_pos\_site\_id set to 1, and
\_space\_group\_symop\_operation\_xyz or
\_symmetry\_equiv\_pos\_as\_xyz set to x,y,z;
i.e. the operation labelled 1 should be the identity
operation.
### <a name="_space_group_symop_sg_id"></a>\_space\_group\_symop\_sg\_id
This must match a particular value of \_space\_group\_id, allowing
the symmetry operation to be identified with a particular space
group.
## <a name="SYMMETRY"></a>SYMMETRY
Data items in the SYMMETRY category record details about the
space-group symmetry.
### <a name="_symmetry_cell_setting"></a>\_symmetry\_cell\_setting
The cell settings for this space-group symmetry.
Values:
* triclinic
* monoclinic
* orthorhombic
* tetragonal
* rhombohedral
* trigonal
* hexagonal
* cubic
### <a name="_symmetry_Int_Tables_number"></a>\_symmetry\_Int\_Tables\_number
Space-group number from International Tables for Crystallography
Vol. A (2002).
### <a name="_symmetry_space_group_name_H-M"></a>\_symmetry\_space\_group\_name\_H-M
Hermann-Mauguin space-group symbol. Note that the Hermann-Mauguin
symbol does not necessarily contain complete information
about the symmetry and the space-group origin. If used, always
supply the FULL symbol from International Tables for
Crystallography Vol. A (2002) and indicate the origin and
the setting if it is not implicit. If there is any doubt
that the equivalent positions can be uniquely deduced from
this symbol, specify the \_symmetry\_equiv\_pos\_as\_xyz
or \*\_Hall data items as well. Leave spaces between
symbols referring to different axes.
### <a name="_symmetry_space_group_name_Hall"></a>\_symmetry\_space\_group\_name\_Hall
Space-group symbol as described by Hall. This symbol gives the
space-group setting explicitly. Leave spaces between the separate
components of the symbol.
Ref: Hall, S. R. (1981). Acta Cryst. A37, 517-525; erratum
(1981), A37, 921.
## <a name="SYMMETRY_EQUIV"></a>SYMMETRY\_EQUIV
Data items in the SYMMETRY\_EQUIV category list the
symmetry-equivalent positions for the space group.
### <a name="_symmetry_equiv_pos_as_xyz"></a>\_symmetry\_equiv\_pos\_as\_xyz
Symmetry-equivalent position in the 'xyz' representation. Except
for the space group P1, these data will be repeated in a loop.
The format of the data item is as per International Tables for
Crystallography Vol. A. (2002). All equivalent positions should
be entered, including those for lattice centring and a centre of
symmetry, if present.
In order for the defaults to work correctly, the identity
operation should have \_space\_group\_symop\_id or
\_symmetry\_equiv\_pos\_site\_id set to 1, and
\_space\_group\_symop\_operation\_xyz or
\_symmetry\_equiv\_pos\_as\_xyz set to x,y,z;
i.e. the operation labelled 1 should be the identity
operation.
### <a name="_symmetry_equiv_pos_site_id"></a>\_symmetry\_equiv\_pos\_site\_id
A code identifying each entry in the \_symmetry\_equiv\_pos\_as\_xyz
list. It is normally the sequence number of the entry in that
list, and should be identified with the code 'n' in
\_geom\_\*\_symmetry\_ codes of the form 'n\_klm'.
In order for the defaults to work correctly, the identity
operation should have \_space\_group\_symop\_id or
\_symmetry\_equiv\_pos\_site\_id set to 1, and
\_space\_group\_symop\_operation\_xyz or
\_symmetry\_equiv\_pos\_as\_xyz set to x,y,z;
i.e. the operation labelled 1 should be the identity
operation.
## <a name="VALENCE_PARAM"></a>VALENCE\_PARAM
Data items in the VALENCE\_PARAM category define the
parameters used for calculating bond valences from bond
lengths. In addition to the parameters, a pointer
is given to the reference (in VALENCE\_REF) from which
the bond-valence parameters were taken.
### <a name="_valence_param_atom_1"></a>\_valence\_param\_atom\_1
The element symbol of the first atom forming the bond whose
bond-valence parameters are given in this category.
### <a name="_valence_param_atom_1_valence"></a>\_valence\_param\_atom\_1\_valence
The valence (formal charge) of the first atom whose
bond-valence parameters are given in this category.
### <a name="_valence_param_atom_2"></a>\_valence\_param\_atom\_2
The element symbol of the second atom forming the bond whose
bond-valence parameters are given in this category.
### <a name="_valence_param_atom_2_valence"></a>\_valence\_param\_atom\_2\_valence
The valence (formal charge) of the second atom whose
bond-valence parameters are given in this category.
### <a name="_valence_param_B"></a>\_valence\_param\_B
The bond-valence parameter B used in the expression
s = exp[(Ro - R)/B]
where s is the valence of a bond of length R.
Units: Angstrom
### <a name="_valence_param_details"></a>\_valence\_param\_details
Details of or comments on the bond-valence parameters.
### <a name="_valence_param_id"></a>\_valence\_param\_id
An identifier for the valence parameters of a bond between
the given atoms.
### <a name="_valence_param_ref_id"></a>\_valence\_param\_ref\_id
An identifier which links to the reference to the source
from which the bond-valence parameters are taken. A child
of \_valence\_ref\_id, which it must match.
### <a name="_valence_param_Ro"></a>\_valence\_param\_Ro
The bond-valence parameter Ro used in the expression
s = exp[(Ro - R)/B]
where s is the valence of a bond of length R.
Units: Angstrom
## <a name="VALENCE_REF"></a>VALENCE\_REF
Data items in the VALENCE\_REF category list the references
from which the bond-valence parameters have been taken.
### <a name="_valence_ref_id"></a>\_valence\_ref\_id
An identifier for items in this category. Parent of
\_valence\_param\_ref\_id, which must have the same value.
### <a name="_valence_ref_reference"></a>\_valence\_ref\_reference
Literature reference from which the valence parameters
identified by \_valence\_param\_id were taken.
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