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cod-tools -- a set of tools for CIF manipulation.
INSTALLATION
Before the installation of cod-tools, dependencies have to be installed.
Dependency installers for some operating systems are provided with the
cod-tools, under dependencies/, and can be executed as follows:
sh dependencies/Ubuntu-20.04/install.sh
To install cod-tools from a clean distribution, the following steps have
to be executed:
make all
make check
make install PREFIX=/usr/local/install/cod-tools
Variable 'PREFIX' may be set to any preferred writable location.
ENVIRONMENT SETUP
After a successful installation, several environment variables should
be updated to make the installed programs and libraries automatically
discoverable by the system. This can be done by executing the following
commands:
COD_TOOLS_PREFIX=/usr/local/install/cod-tools
export PATH=${COD_TOOLS_PREFIX}/bin:${PATH}
export PERL5LIB=${COD_TOOLS_PREFIX}/lib/perl5/:${PERL5LIB}
export PYTHONPATH=${COD_TOOLS_PREFIX}/usr/local/lib/python${PYTHON_VERSION}/dist-packages:${PYTHONPATH}
Where "${PYTHON_VERSION}" is the Python3 version in the X.Y format
(i.e. '3.8'). On Debian/Ubuntu systems this version can be found by
executing the following command:
py3versions --default --version
The provided commands can also be copied to the ~/.bashrc file to
automatically execute them each time a new shell is started.
BUGS
If you find bugs in cod-tools or have any feedback, please contact us at
cod-bugs@ibt.lt
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