File: cif_compare_dics

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#! /bin/sh
#!perl -w # --*- Perl -*--
eval 'exec perl -x $0 ${1+"$@"}'
    if 0;
#------------------------------------------------------------------------------
#$Author: antanas $
#$Date: 2022-07-31 23:15:34 +0300 (Sun, 31 Jul 2022) $
#$Revision: 9355 $
#$URL: svn+ssh://www.crystallography.net/home/coder/svn-repositories/cod-tools/tags/v3.7.0/scripts/cif_compare_dics $
#------------------------------------------------------------------------------
#*
#* Checks a pair of DDL1/DDLm dictionaries for compatibility breaking
#* differences. Discrepancies between corresponding enumeration sets,
#* default values, permitted ranges as well as data items unique to
#* one of the dictionaries are reported.
#*
#* USAGE:
#*    $0 --ddl1 cif_core_ddl1.dic --ddlm cif_core_ddlm.dic --options
#*
#* ENVIRONMENT:
#*   COD_TOOLS_DDLM_IMPORT_PATH
#*                     A list of directories in which to look for the
#*                     DDLm-compliant CIF dictionaries that are imported
#*                     by other DDLm-compliant CIF dictionaries. List
#*                     elements are separated by the colon symbol (':').
#*                     Directories listed in COD_TOOLS_DDLM_IMPORT_PATH
#*                     have a lower priority than those provided using
#*                     the command line option (--add-dictionary-import-path),
#*                     but higher than the default import path directory
#*                     (directory of the importing dictionary).
#**

use strict;
use warnings;
binmode STDOUT, ':encoding(UTF-8)';
binmode STDERR, ':encoding(UTF-8)';

use File::Basename qw( fileparse );
use List::MoreUtils qw( none );

use COD::CIF::Parser qw( parse_cif );
use COD::CIF::DDL::DDLm qw( get_category_id
                            get_data_name
                            get_data_alias
                            get_definition_class
                            get_definition_scope
                            get_type_container
                            get_type_purpose );
use COD::CIF::DDL::DDLm::Import qw( get_ddlm_import_path_from_env
                                    resolve_dic_imports );
use COD::CIF::DDL::Ranges qw( parse_range );
use COD::SOptions qw( getOptions get_value );
use COD::SUsage qw( usage options );
use COD::ErrorHandler qw( process_parser_messages
                          process_warnings
                          report_message );
use COD::UserMessage qw( sprint_message );
use COD::ToolsVersion qw( get_version_string );

sub find_unique_values
{
    my ($array_1, $array_2, $case_sensitive) = @_;

    my %seen;
    foreach ( @{$array_1} ) {
        $seen{($case_sensitive ? $_ : lc $_ )} = $_;
    }
    delete @seen {($case_sensitive ? @{$array_2} : map {lc $_} @{$array_2} )};
    my @unique = values %seen;
    return \@unique;
}

sub ddl1_to_generic_dic
{
    my ($data) = @_;

    my @tags;
    my %enum_values;
    my %enum_defaults;
    my %enum_ranges;
    my %su_eligibility;
    my %loop_eligibility;
    my %data_containers;
    for my $datablock ( @{$data} ) {
        # Skip the data block that describes the dictionary itself
        next if lc $datablock->{'name'} eq 'on_this_dictionary';
        my $values = $datablock->{'values'};
        if ( !exists $values->{'_type'} ) {
            warn "the '$datablock->{'name'}' data block does not contain " .
                 'the \'_type\' data item -- data block will be ignored' .
                 "\n";
            next;
        }
        next if $values->{'_type'}[0] eq 'null';
        if ( !exists $values->{'_name'} ) {
            warn "the '$datablock->{'name'}' data block does not contain " .
                 'the \'_name\' data item -- data block will be ignored' .
                 "\n";
            next;
        }

        for my $name ( map { lc } @{$values->{'_name'}} ) {
            # Data names
            push @tags, $name;
            # Enumeration values
            if ( exists $values->{'_enumeration'} ) {
                $enum_values{$name} = $values->{'_enumeration'};
            }
            # Enumeration defaults
            if ( $values->{'_enumeration_default'} ) {
                $enum_defaults{$name} = $values->{'_enumeration_default'}[0];
            }
            # Enumeration ranges
            if ( exists $values->{'_enumeration_range'} ) {
                $enum_ranges{$name} = $values->{'_enumeration_range'}[0];
            }
            # Standard uncertainty eligibility
            # FIXME: consider the default
            if ( exists $values->{'_type_conditions'} ) {
                $su_eligibility{$name} =
                    $values->{'_type_conditions'}[0] eq 'su' ||
                    $values->{'_type_conditions'}[0] eq 'esd' ;
            }
            # Looped list eligibility
            my $is_looped = 0;
            if ( exists $values->{'_list'} ) {
                if ( $values->{'_list'}[0] eq 'yes' ||
                     $values->{'_list'}[0] eq 'both' ) {
                    $is_looped = 1;
                }
            }
            $loop_eligibility{$name} = $is_looped;
            # Data containers
            $data_containers{$name} = 'Single';
        }
    }

    return {
             'data_names'       => \@tags,
             'enum_values'      => \%enum_values,
             'enum_defaults'    => \%enum_defaults,
             'enum_ranges'      => \%enum_ranges,
             'su_eligibility'   => \%su_eligibility,
             'loop_eligibility' => \%loop_eligibility,
             'data_containers'  => \%data_containers,
           };
}

sub ddlm_to_generic_dic
{
    my ($data) = @_;

    my @ddlm_tags;
    my %enum_values;
    my %enum_defaults;
    my %enum_ranges;
    my %su_eligibility;
    my %loop_eligibility;
    my %data_containers;
    for my $save_block ( @{$data->{'save_blocks'}} ) {
        next if get_definition_scope( $save_block ) ne 'Item';
        my $data_name = get_data_name( $save_block );
        if ( !defined $data_name ) {
            warn "the '$save_block->{'name'}' save block does not contain " .
                 'the \'_definition.id\' data item -- save block will be ' .
                 'ignored' . "\n";
            next;
        }

        my $cat_block = get_category_block( $save_block, $data->{'save_blocks'} );

        my @data_names = ( lc $data_name );
        push @data_names, map { lc } @{get_data_alias($save_block)};
        my $values = $save_block->{'values'};

        # Enumeration values
        if ( exists $values->{'_enumeration_set.state'} ) {
            foreach ( @data_names ) {
                $enum_values{$_} = $values->{'_enumeration_set.state'};
            }
        }
        # Enumeration defaults
        if ( exists $values->{'_enumeration.default'} ) {
            foreach ( @data_names ) {
                $enum_defaults{$_} = $values->{'_enumeration.default'}[0];
            }
        }
        # Enumeration defaults
        if ( exists $values->{'_enumeration.range'} ) {
            foreach ( @data_names ) {
                $enum_ranges{$_} = $values->{'_enumeration.range'}[0];
            }
        }
        # Standard uncertainty eligibility
        my $is_su_eligible = lc get_type_purpose( $save_block ) eq 'measurand';
        foreach ( @data_names ) {
            $su_eligibility{$_} = $is_su_eligible;
        }
        # Looped list eligibility
        my $is_loop_eligible = is_looped_category( $cat_block );
        if ( defined $is_loop_eligible ) {
            foreach ( @data_names ) {
                $loop_eligibility{$_} = $is_loop_eligible;
            }
        }
        # Data containers
        foreach ( @data_names ) {
            $data_containers{$_} = get_type_container( $save_block );
        }

        #~ # Looped list key
        #~ my $looped_list_key = get_ddlm_category_key( $data->{'save_blocks'} );

        # Data names
        push @ddlm_tags, @data_names;
    }

    return {
             'data_names'       => \@ddlm_tags,
             'enum_values'      => \%enum_values,
             'enum_defaults'    => \%enum_defaults,
             'enum_ranges'      => \%enum_ranges,
             'su_eligibility'   => \%su_eligibility,
             'loop_eligibility' => \%loop_eligibility,
             'data_containers'  => \%data_containers,
           };
}

sub get_category_block
{
    my ( $save_block, $dic_blocks ) = @_;

    my $category_id = get_category_id( $save_block );
    if ( !defined $category_id ) {
        warn "the '$save_block->{'name'}' save block does not contain " .
             'the mandatory \'_name.category_id\' data item -- ' .
             'some comparisons for this data item will be skipped' . "\n";
        return;
    }
    $category_id = lc $category_id;

    my @category_blocks;
    for my $dic_block ( @{$dic_blocks} ) {
        my $data_name = get_data_name( $dic_block );
        next if !defined $data_name;
        $data_name = lc $data_name;
        if ( $data_name eq $category_id ) {
            push @category_blocks, $dic_block;
        }
    }

    if ( !@category_blocks ) {
        warn "faulty category definition -- the '$save_block->{'name'}' " .
             "save block refers to the '$category_id' category that could " .
             'not be located' . "\n";
        return;
    }

    if ( @category_blocks > 1 ) {
        warn 'faulty category definition -- more than one save block ' .
             "defines the '$category_id' category\n";
        return;
    }

    return $category_blocks[0];
}

sub is_looped_category
{
    my ( $category_block ) = @_;

    return if !defined $category_block;
    my $definition_class = lc get_definition_class( $category_block );

    return ( $definition_class eq 'loop' );
}

sub get_category_key
{
    my ( $category_block ) = @_;

    my @loop_keys;
    if ( exists $category_block->{'values'}{'_category_key.name'} ) {
        push @loop_keys, @{$category_block->{'values'}{'_category_key.name'}};
    } elsif ( exists $category_block->{'values'}{'_category.key_id'} ) {
        push @loop_keys, @{$category_block->{'values'}{'_category.key_id'}};
    }

    return \@loop_keys;
}

sub check_dic_compatability
{
    my ( $old_dic, $new_dic ) = @_;

    my $signatures = {
        'old_dic_signature' => $old_dic->{'signature'},
        'new_dic_signature' => $new_dic->{'signature'},
    };

    my @compatability_notes;
    my %new_tags = map { $_ => 1 } @{$new_dic->{'data_names'}};
    for my $tag ( @{$old_dic->{'data_names'}} ) {
        if ( exists $new_tags{$tag} ) {
            push @compatability_notes,
                 @{ compare_enumeration_values(
                        $tag,
                        $old_dic->{'enum_values'},
                        $new_dic->{'enum_values'},
                        $signatures ) };
            push @compatability_notes,
                 @{ compare_enumeration_defaults(
                        $tag,
                        $old_dic->{'enum_defaults'},
                        $new_dic->{'enum_defaults'},
                        $signatures ) };
            push @compatability_notes,
                 @{ compare_enumeration_ranges(
                        $tag,
                        $old_dic->{'enum_ranges'},
                        $new_dic->{'enum_ranges'},
                        $signatures ) };
            push @compatability_notes,
                 @{ compare_su_eligibility(
                        $tag,
                        $old_dic->{'su_eligibility'},
                        $new_dic->{'su_eligibility'},
                        $signatures ) };
            push @compatability_notes,
                 @{ compare_loop_eligibility(
                        $tag,
                        $old_dic->{'loop_eligibility'},
                        $new_dic->{'loop_eligibility'},
                        $signatures ) };
            push @compatability_notes,
                 @{ compare_data_containers(
                        $tag,
                        $old_dic->{'data_containers'},
                        $new_dic->{'data_containers'},
                        $signatures ) };
        } else {
            push @compatability_notes,
                 "WARNING, data name '$tag' is defined in the " .
                 $signatures->{'old_dic_signature'} .
                 ' dictionary, but seems to be missing in the ' .
                 $signatures->{'new_dic_signature'} . ' dictionary';
        }
    }

    return \@compatability_notes;
}

sub are_equivalent_limits
{
    my ($limit_1, $limit_2) = @_;

    my $sigma = 0.000001;

    return 1 if ( !defined $limit_1 && !defined $limit_2 );
    return 0 if ( !defined $limit_1 || !defined $limit_2 );
    return 0 if ( abs($limit_1 - $limit_2) > $sigma );

    return 1;
}

sub compare_enumeration_values
{
    my ( $tag, $old_enum_values, $new_enum_values, $signatures ) = @_;

    my $new_dic_signature = $signatures->{'new_dic_signature'};
    my $old_dic_signature = $signatures->{'old_dic_signature'};

    return [] if !exists $old_enum_values->{$tag};

    my $unique_in_old = $old_enum_values->{$tag};
    if ( exists $new_enum_values->{$tag} ) {
        $unique_in_old = find_unique_values( $old_enum_values->{$tag},
                                             $new_enum_values->{$tag}, 0 );
    }

    my @messages;
    if ( @{$unique_in_old} ) {
        push @messages,
             'WARNING, enumeration values [' .
             ( join ', ', map {"'$_'"} sort @{$unique_in_old} ) .
            "] of data item '$tag' are defined in " .
            "the $old_dic_signature dictionary, but not in " .
            "the $new_dic_signature dictionary";
    };

    return \@messages;
}

sub compare_enumeration_defaults
{
    my ( $tag, $old_enum_default, $new_enum_default, $signatures ) = @_;

    my $new_dic_signature = $signatures->{'new_dic_signature'};
    my $old_dic_signature = $signatures->{'old_dic_signature'};

    return [] if !exists $old_enum_default->{$tag};

    my @messages;
    if ( exists $new_enum_default->{$tag} ) {
        if ( $old_enum_default->{$tag} ne $new_enum_default->{$tag} ) {
            push @messages,
                 "WARNING, enumeration default of the '$tag' data item " .
                 "differs between the $old_dic_signature dictionary and " .
                 "the $new_dic_signature dictionary " .
                 "('$old_enum_default->{$tag}' vs. '$new_enum_default->{$tag}')";
        }
    } else {
        push @messages,
             "WARNING, enumeration default '$old_enum_default->{$tag}' " .
             "is defined for data item '$tag' in the $old_dic_signature " .
             "dictionary, but not in the $new_dic_signature dictionary";
    }

    return \@messages;
}

sub compare_enumeration_ranges
{
    my ( $tag, $old_enum_range, $new_enum_range, $signatures ) = @_;

    my $new_dic_signature = $signatures->{'new_dic_signature'};
    my $old_dic_signature = $signatures->{'old_dic_signature'};

    return [] if !exists $new_enum_range->{$tag};

    my @messages;
    if ( exists $old_enum_range->{$tag} ) {
        my @old_range = @{parse_range($old_enum_range->{$tag})};
        my @new_range = @{parse_range($new_enum_range->{$tag})};
        if ( !are_equivalent_limits( $old_range[0], $new_range[0] ) ||
             !are_equivalent_limits( $old_range[1], $new_range[1] ) ) {
            push @messages,
                 "WARNING, enumeration range of the '$tag' data item " .
                 "differs between the $old_dic_signature dictionary and " .
                 "the $new_dic_signature dictionary " .
                 "('$old_enum_range->{$tag}' vs. '$new_enum_range->{$tag}')";
        }
    } else {
        push @messages,
             "WARNING, enumeration range '$new_enum_range->{$tag}' " .
             "is defined for data item '$tag' in the $new_dic_signature " .
             "dictionary, but not in the $old_dic_signature dictionary";
    }

    return \@messages;
}

sub compare_su_eligibility
{
    my ( $tag, $old_su_eligibility, $new_su_eligibility, $signatures ) = @_;

    my $new_dic_signature = $signatures->{'new_dic_signature'};
    my $old_dic_signature = $signatures->{'old_dic_signature'};

    return [] if !exists $old_su_eligibility->{$tag};

    my @messages;
    if (  $old_su_eligibility->{$tag} &&
         !$new_su_eligibility->{$tag} ) {
        push @messages,
             "WARNING, data item '$tag' is allowed to contain standard " .
             "uncertainty (s.u.) values by the $old_dic_signature " .
             "dictionary, but not by the $new_dic_signature dictionary";
    };

    return \@messages;
}

sub compare_loop_eligibility
{
    my ( $tag, $old_loop_eligibility, $new_loop_eligibility, $signatures ) = @_;

    my $new_dic_signature = $signatures->{'new_dic_signature'};
    my $old_dic_signature = $signatures->{'old_dic_signature'};

    return [] if !exists $old_loop_eligibility->{$tag};

    my @messages;
    if (  $old_loop_eligibility->{$tag} &&
         !$new_loop_eligibility->{$tag} ) {
        push @messages,
             "WARNING, data item '$tag' is allowed to appear in a looped " .
             "context by the $old_dic_signature dictionary, but not by the " .
             "$new_dic_signature dictionary";
    };

    return \@messages;
}

##
# Checks if the data structure of the given data item is compatible
# between the old version and the new version of the dictionary.
#
# @param $tag
#       Data name of the data item that should be checked.
# @param $old_data_structure
#       Reference to a hash that maps data item names to their container type
#       as defined in the old dictionary.
# @param $new_data_structure
#       Reference to a hash that maps data item names to their container type
#       as defined in the new dictionary.
# @param $signatures
#       Reference to a hash that contains short human-readable identifiers
#       of the old and new dictionary, i.e.:
#       {
#           'new_dic_signature' => "'cif_cod.dic' DDL1",
#           'old_dic_signature' => "'cif_cod.dic' DDLm",
#       }
# @return
#       Reference to an array of warning messages.
##
sub compare_data_containers
{
    my ( $tag, $old_data_structure, $new_data_structure, $signatures ) = @_;

    my $new_dic_signature = $signatures->{'new_dic_signature'};
    my $old_dic_signature = $signatures->{'old_dic_signature'};

    return [] if !exists $old_data_structure->{$tag};

    my @messages;
    if ( $old_data_structure->{$tag} ne $new_data_structure->{$tag} ) {
        push @messages,
             "WARNING, container type of the '$tag' data item differs " .
             "between the $old_dic_signature dictionary and " .
             "the $new_dic_signature dictionary " .
             "('$old_data_structure->{$tag}' vs. '$new_data_structure->{$tag}')";
    }

    return \@messages;
}

my $use_parser = 'c';

my $ddl1_file;
my $ddlm_file;
my @dic_import_path;
my @LEGACY_TYPES = qw( ddl1 ddlm );
my $legacy_type  = $LEGACY_TYPES[0];

#* OPTIONS:
#*   -1, --ddl1
#*                     The name of the DDL1 conforming dictionary that should
#*                     be used in the comparison.
#*   -m, --ddlm
#*                     The name of the DDLm conforming dictionary that should
#*                     be used in the comparison.
#*
#*   -I, --add-ddlm-import-path './ddlm/cod/'
#*                     Prepend an additional directory to the dictionary
#*                     import path. The dictionary import path specifies
#*                     a list of directories in which to look for files
#*                     that are imported by DDLm-compliant CIF dictionaries.
#*                     Directories provided using this option are assigned
#*                     the highest priority and are searched prior to
#*                     the directories listed in the COD_TOOLS_DDLM_IMPORT_PATH
#*                     environment variable or the default import path
#*                     (directory of the importing dictionary).
#*   --clear-ddlm-import-path
#*                     Remove all directories from the dictionary import path
#*                     that were added using the --add-ddlm-import-path option.
#*                     Neither COD_TOOLS_DDLM_IMPORT_PATH environment variable
#*                     nor the default import path is affected by this option.
#*
#*   --legacy-dic-type ddl1
#*                     The type of the dictionary that should treated as the
#*                     legacy one. Accepted values: 'ddl1' (default), 'ddlm'.
#*
#*   --help, --usage
#*                     Output a short usage message (this message) and exit.
#*   --version
#*                     Output version information and exit.
#**
@ARGV = getOptions(
    '-1,--ddl1'              => sub { $ddl1_file = get_value() },
    '-m,--ddlm'              => sub { $ddlm_file = get_value() },

    '-I,--add-ddlm-import-path' => sub { push @dic_import_path, get_value() },
    '--clear-ddlm-import-path'  => sub { @dic_import_path = () },

    '--legacy-dic-type'      => sub { $legacy_type = get_value() },

    '--options'      => sub { options; exit },
    '--help,--usage' => sub { usage; exit; },
    '--version'      => sub { print get_version_string(), "\n"; exit }
);

my $die_on_error_level = {
    'ERROR'   => 1,
    'WARNING' => 0,
    'NOTE'    => 0,
};

if ( none { $legacy_type eq $_ } @LEGACY_TYPES ) {
    report_message(
        {
            'program'   => $0,
            'err_level' => 'ERROR',
            'message'   =>
                "the specified legacy dictionary type '$legacy_type' is " .
                'not one of the supported dictionary types [' .
                ( join ',', map {"'$_'"} @LEGACY_TYPES ) . '].'
        }, $die_on_error_level
    )
}

my $options = { 'parser' => $use_parser, 'no_print' => 1 };
my ( $ddl1_data, $ddlm_data, $err_count, $messages );
( $ddl1_data, $err_count, $messages ) = parse_cif( $ddl1_file, $options );
process_parser_messages( $messages, $die_on_error_level );
( $ddlm_data, $err_count, $messages ) = parse_cif( $ddlm_file, $options );
process_parser_messages( $messages, $die_on_error_level );

# This logic was adapted from the ddlm_validate script
$ddlm_data = $ddlm_data->[0];
my $dirs = (fileparse($ddlm_file))[1];
push @dic_import_path, @{get_ddlm_import_path_from_env()};

$ddlm_data = resolve_dic_imports(
    $ddlm_data,
    {
        'import_path'         => [ @dic_import_path, $dirs ],
        'parser_options'      => $options,
        'die_on_error_level'  => $die_on_error_level,
        'importing_file'      => $ddlm_file,
    }
);

my $ddl1_dic;
{
    local $SIG{__WARN__} = sub {
        process_warnings( {
            'message'  => @_,
            'program'  => $0,
            'filename' => $ddl1_file,
        }, $die_on_error_level )
    };
    my $ddl1_name = (fileparse($ddl1_file))[0];
    $ddl1_dic = ddl1_to_generic_dic($ddl1_data);
    $ddl1_dic->{'signature'} = "'$ddl1_name' DDL1";
}

my $ddlm_dic;
{
    local $SIG{__WARN__} = sub {
        process_warnings( {
            'message'  => @_,
            'program'  => $0,
            'filename' => $ddlm_file,
        }, $die_on_error_level )
    };
    my $ddlm_name = (fileparse($ddlm_file))[0];
    $ddlm_dic = ddlm_to_generic_dic($ddlm_data);
    $ddlm_dic->{'signature'} = "'$ddlm_name' DDLm";
}

my $notes;
if ( $legacy_type eq 'ddl1' ) {
    $notes = check_dic_compatability( $ddl1_dic, $ddlm_dic )
} else {
    $notes = check_dic_compatability( $ddlm_dic, $ddl1_dic )
};

for ( @{$notes} ) {
    print sprint_message( {
        'program' => $0,
        'message' => $_,
    } )
}