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#!/usr/bin/env python
# -*- coding: utf-8 -*-
#-------------------------------------------------------------------------------
# This file is part of Code_Saturne, a general-purpose CFD tool.
#
# Copyright (C) 1998-2019 EDF S.A.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 51 Franklin
# Street, Fifth Floor, Boston, MA 02110-1301, USA.
#-------------------------------------------------------------------------------
"""
This module describes the script used to create a study/case for Code_Saturne.
This module defines the following functions:
- usage
- process_cmd_line
- set_executable
- unset_executable
and the following classes:
- study
- class
"""
#-------------------------------------------------------------------------------
# Library modules import
#-------------------------------------------------------------------------------
from __future__ import print_function
import os, sys, shutil, stat
import types, string, re, fnmatch
from optparse import OptionParser
try:
import ConfigParser # Python2
configparser = ConfigParser
except Exception:
import configparser # Python3
import cs_exec_environment
import cs_runcase
#-------------------------------------------------------------------------------
# Process the passed command line arguments
#-------------------------------------------------------------------------------
def process_cmd_line(argv, pkg):
"""
Process the passed command line arguments.
"""
if sys.argv[0][-3:] == '.py':
usage = "usage: %prog [options]"
else:
usage = "usage: %prog create [options]"
parser = OptionParser(usage=usage)
parser.add_option("-s", "--study", dest="study_name", type="string",
metavar="<study>",
help="create a new study")
parser.add_option("-c", "--case", dest="case_names", type="string",
metavar="<case>", action="append",
help="create a new case")
parser.add_option("--copy-from", dest="copy", type="string",
metavar="<case>",
help="create a case from another one")
parser.add_option("--import-only", dest="import_only",
action="store_true",
help="rebuild scripts of existing case")
parser.add_option("--noref", dest="use_ref",
action="store_false",
help="don't copy references")
parser.add_option("-q", "--quiet",
action="store_const", const=0, dest="verbose",
help="do not output any information")
parser.add_option("-v", "--verbose",
action="store_const", const=2, dest="verbose",
help="dump study creation parameters")
parser.add_option("--syrthes", dest="syr_case_names", type="string",
metavar="<syr_cases>", action="append",
help="create new SYRTHES case(s).")
parser.add_option("--aster", dest="ast_case_name", type="string",
metavar="<ast_case>",
help="create a new Code_Aster case.")
parser.add_option("--cathare", dest="cat_case_name", type="string",
metavar="<cat_case>",
help="create a new Cathare2 case.")
parser.add_option("--python", dest="py_case_name", type="string",
metavar="<py_case>",
help="create a new Python script case.")
parser.set_defaults(use_ref=True)
parser.set_defaults(study_name=os.path.basename(os.getcwd()))
parser.set_defaults(case_names=[])
parser.set_defaults(copy=None)
parser.set_defaults(verbose=1)
parser.set_defaults(import_only=False)
parser.set_defaults(n_sat=1)
parser.set_defaults(syr_case_names=[])
parser.set_defaults(ast_case_name=None)
parser.set_defaults(cat_case_name=None)
parser.set_defaults(py_case_name=None)
(options, args) = parser.parse_args(argv)
if options.case_names == []:
if len(args) > 0:
options.case_names = args
else:
if not options.import_only:
options.case_names = ["CASE1"]
else:
options.case_names = [""]
return Study(pkg,
options.study_name,
options.case_names,
options.syr_case_names,
options.ast_case_name,
options.cat_case_name,
options.py_case_name,
options.copy,
options.import_only,
options.use_ref,
options.verbose)
#-------------------------------------------------------------------------------
# Assign executable mode (chmod +x) to a file
#-------------------------------------------------------------------------------
def set_executable(filename):
"""
Give executable permission to a given file.
Equivalent to `chmod +x` shell function.
"""
st = os.stat(filename)
mode = st[stat.ST_MODE] | stat.S_IXUSR
if mode & stat.S_IRGRP:
mode = mode | stat.S_IXGRP
if mode & stat.S_IROTH:
mode = mode | stat.S_IXOTH
os.chmod(filename, mode)
return
#-------------------------------------------------------------------------------
# Remove executable mode (chmod -x) from a file or files inside a directory
#-------------------------------------------------------------------------------
def unset_executable(path):
"""
Remove executable permission from a given file or files inside a directory.
Equivalent to `chmod -x` shell function.
"""
if os.path.isfile(path):
try:
st = os.stat(path)
mode = st[stat.ST_MODE] | stat.S_IXUSR | stat.S_IXGRP | stat.S_IXOTH
mode = mode ^ (stat.S_IXUSR | stat.S_IXGRP | stat.S_IXOTH)
os.chmod(path, mode)
except Exception:
pass
elif os.path.isdir(path):
l = os.listdir(path)
for p in l:
unset_executable(p)
return
#-------------------------------------------------------------------------------
# Build lines necessary to import SYRTHES packages
#-------------------------------------------------------------------------------
def syrthes_path_line(pkg):
"""
Build lines necessary to import SYRTHES packages
"""
line = None
config = configparser.ConfigParser()
config.read(pkg.get_configfiles())
if config.has_option('install', 'syrthes'):
syr_datapath = os.path.join(config.get('install', 'syrthes'),
os.path.join('share', 'syrthes'))
line = 'sys.path.insert(1, \'' + syr_datapath + '\')\n'
return line
#-------------------------------------------------------------------------------
# Definition of a class for a study
#-------------------------------------------------------------------------------
class Study:
def __init__(self, package, name, cases, syr_case_names, ast_case_name,
cat_case_name, py_case_name,
copy, import_only, use_ref, verbose):
"""
Initialize the structure for a study.
"""
# Package specific information
self.package = package
self.name = name
self.copy = copy
if self.copy is not None:
self.copy = os.path.abspath(self.copy)
self.import_only = import_only
self.use_ref = use_ref
self.verbose = verbose
self.cases = []
for c in cases:
self.cases.append(c)
self.n_sat = len(cases)
self.syr_case_names = []
for c in syr_case_names:
self.syr_case_names.append(c)
self.ast_case_name = ast_case_name
self.cat_case_name = cat_case_name
self.py_case_name = py_case_name
if self.import_only:
self.use_ref = False
self.copy = None
# Options is now deprecated, print info
sys.stdout.write(" o '%s create --import-only' is deprecated.\n" % \
self.package.name)
sys.stdout.write(" o Use '%s update' instead\n\n" % self.package.name)
def create(self):
"""
Create a study.
"""
if self.name != os.path.basename(os.getcwd()):
if not self.import_only:
if self.verbose > 0:
sys.stdout.write(" o Creating study '%s'...\n" % self.name)
os.mkdir(self.name)
os.chdir(self.name)
os.mkdir('MESH')
os.mkdir('POST')
else:
if self.verbose > 0:
sys.stdout.write(" o Importing study '%s'...\n" % self.name)
os.chdir(self.name)
# Creating Code_Saturne cases
repbase = os.getcwd()
for c in self.cases:
os.chdir(repbase)
self.create_case(c)
# Creating SYRTHES cases
if len(self.syr_case_names) > 0:
self.create_syrthes_cases(repbase)
# Creating Code_Aster case
if self.ast_case_name is not None:
config = configparser.ConfigParser()
config.read(self.package.get_configfiles())
if config.has_option('install', 'aster'):
self.create_aster_case(repbase)
else:
sys.stderr.write("Cannot locate Code_Aster installation.")
sys.exit(1)
# Creating Cathare case
if self.cat_case_name is not None:
config = configparser.ConfigParser()
config.read(self.package.get_configfiles())
if config.has_option('install', 'cathare'):
self.create_cathare_case(repbase, config.get('install', 'cathare'))
else:
sys.stderr.write("Cannot locate Cathare installation.")
sys.exit(1)
# Creating the Python script case
if self.py_case_name is not None:
self.create_python_case(repbase)
# Creating coupling structure
if len(self.cases) + len(self.syr_case_names) > 1 or self.ast_case_name \
or self.cat_case_name or self.py_case_name:
self.create_coupling(repbase)
def create_syrthes_cases(self, repbase):
"""
Create and initialize SYRTHES case directories.
"""
os_env_save = os.environ
cs_exec_environment.source_syrthes_env(self.package)
import syrthes
for s in self.syr_case_names:
os.chdir(repbase)
if not self.import_only:
retval = syrthes.create_syrcase(s)
else:
retval = 0
if retval > 0:
sys.stderr.write("Cannot create SYRTHES case: '%s'\n" % s)
sys.exit(1)
os_environ = os_env_save
def create_aster_case(self, repbase):
"""
Create and initialize Code_Aster case directory.
"""
if self.verbose > 0:
sys.stdout.write(" o Creating Code_Aster case '%s'...\n" %
self.ast_case_name)
c = os.path.join(repbase, self.ast_case_name)
if not self.import_only:
os.mkdir(c)
datadir = self.package.get_dir("pkgdatadir")
try:
shutil.copy(os.path.join(datadir, 'salome', 'fsi.export'),
os.path.join(repbase, self.ast_case_name))
except:
sys.stderr.write("Cannot copy fsi.export file: " + \
os.path.join(datadir, 'salome', 'fsi.export') + ".\n")
sys.exit(1)
def create_cathare_case(self, repbase, cathare_path):
"""
Create and initialize Cathare case directory for coupling.
"""
os.chdir(repbase)
self.create_case(self.cat_case_name)
# Copying the Cathare coupling necessary files for the cases
datadir = os.path.join(self.package.get_dir("datadir"),
self.package.name)
if os.path.isdir(os.path.join(datadir, 'cathare_coupling')):
cathare_cpl_dir = os.path.join(datadir, 'cathare_coupling')
# Script which converts the Cathare JDD file to a .so library
fin = open(os.path.join(cathare_cpl_dir, 'user_scripts', 'cathare_jdd_to_lib.sh'))
fout = open(os.path.join(repbase, self.cat_case_name, 'DATA', 'cathare_jdd_to_lib.sh'), 'wt')
for line in fin:
fout.write(line.replace('#path_to_v25_3=',
'export v25_3='+cathare_path))
fin.close()
fout.close()
else:
sys.stderr.write("Cannot find the directory: " + \
os.path.join(datadir, 'cathare_coupling') + "\n")
sys.exit(1)
def create_python_case(self, repbase):
"""
Create and initialize Python code case directory for coupling
"""
os.chdir(repbase)
if self.verbose > 0:
sys.stdout.write(" o Creating Python code case '%s'...\n" %
self.py_case_name)
c = os.path.join(repbase, self.py_case_name)
if not os.path.isdir(c):
os.mkdir(c)
os.chdir(c)
for d in ["DATA", "SRC", "RESU"]:
if not os.path.isdir(d):
os.mkdir(d)
def create_coupling(self, repbase):
"""
Create structure to enable code coupling.
"""
if self.verbose > 0:
sys.stdout.write(" o Creating coupling features ...\n")
e_pkg = re.compile('PACKAGE')
e_dom = re.compile('DOMAIN')
solver_name = self.package.code_name
header = \
"""# -*- coding: utf-8 -*-
#===============================================================================
# User variable settings to specify a coupling computation environnement.
# A coupling case is defined by a dictionnary, containing the following:
# Solver type ('Code_Saturne', 'SYRTHES', 'NEPTUNE_CFD' or 'Code_Aster')
# Domain directory name
# Run parameter setting file
# Number of processors (or None for automatic setting)
# Optional command line parameters. If not useful = None
#===============================================================================
"""
dict_str = \
"""
# Define coupled domains
domains = [
"""
sep = ""
for c in self.cases:
c = os.path.normpath(c)
base_c = os.path.basename(c)
template = sep + \
"""
{'solver': 'PACKAGE',
'domain': 'DOMAIN',
'script': 'runcase',
'n_procs_weight': None,
'n_procs_min': 1,
'n_procs_max': None}
"""
template = re.sub(e_pkg, solver_name, template)
template = re.sub(e_dom, base_c, template)
dict_str += template
if sep == "":
sep = \
"""
,"""
for c in self.syr_case_names:
c = os.path.normpath(c)
base_c = os.path.basename(c)
template = \
"""
,
{'solver': 'SYRTHES',
'domain': 'DOMAIN',
'script': 'syrthes_data.syd',
'n_procs_weight': None,
'n_procs_min': 1,
'n_procs_max': None,
'opt' : ''} # Additional SYRTHES options
# (ex.: postprocessing with '-v ens' or '-v med')
"""
template = re.sub(e_dom, base_c, template)
dict_str += template
if self.ast_case_name is not None:
template = \
"""
,
{'solver': 'Code_Aster',
'domain': 'DOMAIN',
'script': 'fsi.export'}
"""
template = re.sub(e_dom, self.ast_case_name, template)
dict_str += template
if self.cat_case_name is not None:
c = os.path.normpath(self.cat_case_name)
base_c = os.path.basename(c)
template = \
"""
,
{'solver': 'CATHARE',
'domain': 'DOMAIN',
'script': 'runcase',
'paramfile': 'setup.xml',
'cathare_case_file': 'jdd_case.dat',
'neptune_cfd_domain': 'NEPTUNE',
'n_procs_weight': None,
'n_procs_min': 1,
'n_procs_max': 1}
"""
template = re.sub(e_pkg, solver_name, template)
template = re.sub(e_dom, base_c, template)
dict_str += template
if self.py_case_name is not None:
c = os.path.normpath(self.py_case_name)
base_c = os.path.basename(c)
template = \
"""
,
{'solver': 'PYTHON_CODE',
'domain': 'DOMAIN',
'py_code': 'pycode.py',
'command_line': '',
'n_procs_weight': None,
'n_procs_min': 1,
'n_procs_max': 1}
"""
template = re.sub(e_dom, self.py_case_name, template)
dict_str += template
# Now finish building dictionnary string
dict_str += \
"""
]
"""
# Result directory for coupling execution
resu = os.path.join(repbase, 'RESU_COUPLING')
if not self.import_only:
os.mkdir(resu)
coupling_base = 'coupling_parameters.py'
coupling = os.path.join(repbase, coupling_base)
fd = open(coupling, 'w')
fd.write(header)
if len(self.syr_case_names) > 0:
syrthes_insert = syrthes_path_line(self.package)
if syrthes_insert:
fd.write("\n# Ensure the correct SYRTHES install is used.\n")
fd.write(syrthes_insert)
fd.write(dict_str)
if self.cat_case_name is not None:
config = configparser.ConfigParser()
config.read(self.package.get_configfiles())
cathare_libpath=config.get('install', 'cathare')
else:
cathare_libpath=None
self.build_batch_file(distrep = repbase,
casename = 'coupling',
coupling = coupling_base,
cathare_path = cathare_libpath)
def create_case(self, casename):
"""
Create a case for a Code_Saturne study.
"""
casedirname = casename
if self.verbose > 0:
if not self.import_only:
sys.stdout.write(" o Creating case '%s'...\n" % casename)
else:
if not casename:
casedirname = "."
casename = os.path.basename(os.getcwd())
sys.stdout.write(" o Importing case '%s'...\n" % casename)
datadir = self.package.get_dir("pkgdatadir")
data_distpath = os.path.join(datadir, 'data')
if not self.import_only:
try:
os.mkdir(casedirname)
except:
sys.exit(1)
os.chdir(casedirname)
# Data directory
data = 'DATA'
if not self.import_only:
os.mkdir(data)
if self.use_ref:
thch_distpath = os.path.join(data_distpath, 'thch')
ref = os.path.join(data, 'REFERENCE')
os.mkdir(ref)
for f in ['dp_C3P', 'dp_C3PSJ', 'dp_C4P', 'dp_ELE',
'dp_FUE', 'dp_transfo', 'meteo']:
abs_f = os.path.join(thch_distpath, f)
if os.path.isfile(abs_f):
shutil.copy(abs_f, ref)
unset_executable(ref)
abs_f = os.path.join(datadir, 'cs_user_scripts.py')
shutil.copy(abs_f, ref)
unset_executable(ref)
# Write a wrapper for GUI launching
guiscript = os.path.join(data, self.package.guiname)
fd = open(guiscript, 'w')
cs_exec_environment.write_shell_shebang(fd)
cs_exec_environment.write_script_comment(fd,
'Ensure the correct command is found:\n')
cs_exec_environment.write_prepend_path(fd, 'PATH',
self.package.get_dir("bindir"))
fd.write('\n')
cs_exec_environment.write_script_comment(fd, 'Run command:\n')
# On Linux systems, add a backslash to prevent aliases
if sys.platform.startswith('linux'): fd.write('\\')
fd.write(self.package.name + ' gui ' +
cs_exec_environment.get_script_positional_args() + '\n')
fd.close()
set_executable(guiscript)
# User source files directory
if not self.import_only:
src = 'SRC'
os.mkdir(src)
if self.use_ref:
user_distpath = os.path.join(datadir, 'user')
user_examples_distpath = os.path.join(datadir, 'user_examples')
user = os.path.join(src, 'REFERENCE')
user_examples = os.path.join(src, 'EXAMPLES')
shutil.copytree(user_distpath, user)
shutil.copytree(user_examples_distpath, user_examples)
add_datadirs = []
if self.package.name == 'neptune_cfd' :
add_datadirs.append(os.path.join(self.package.get_dir("datadir"),
self.package.name))
for d in add_datadirs:
user_distpath = os.path.join(d, 'user')
user_examples_distpath = os.path.join(d, 'user_examples')
if os.path.isdir(user_distpath):
s_files = os.listdir(user_distpath)
for f in s_files:
shutil.copy(os.path.join(user_distpath, f), user)
if os.path.isdir(user_examples_distpath):
s_files = os.listdir(user_examples_distpath)
for f in s_files:
shutil.copy(os.path.join(user_examples_distpath, f), user_examples)
unset_executable(user)
unset_executable(user_examples)
# Copy data and source files from another case
if self.copy is not None:
# Data files
ref_data = os.path.join(self.copy, data)
data_files = os.listdir(ref_data)
for f in data_files:
abs_f = os.path.join(ref_data, f)
if os.path.isfile(abs_f) and \
f not in [self.package.guiname,
'preprocessor_output']:
shutil.copy(os.path.join(ref_data, abs_f), data)
unset_executable(os.path.join(data, f))
# Source files
ref_src = os.path.join(self.copy, src)
if os.path.exists(ref_src):
src_files = os.listdir(ref_src)
else:
src_files = []
c_files = fnmatch.filter(src_files, '*.c')
cxx_files = fnmatch.filter(src_files, '*.cxx')
cpp_files = fnmatch.filter(src_files, '*.cpp')
h_files = fnmatch.filter(src_files, '*.h')
hxx_files = fnmatch.filter(src_files, '*.hxx')
hpp_files = fnmatch.filter(src_files, '*.hpp')
f_files = fnmatch.filter(src_files, '*.[fF]90')
for f in c_files + h_files + f_files + \
cxx_files + cpp_files + hxx_files + hpp_files:
shutil.copy(os.path.join(ref_src, f), src)
unset_executable(os.path.join(src, f))
# Results directory (only one for all instances)
resu = 'RESU'
if not os.path.isdir(resu):
os.mkdir(resu)
# Script directory (only one for all instances)
scripts = 'SCRIPTS'
if not os.path.isdir(scripts):
os.mkdir(scripts)
self.build_batch_file(distrep = os.path.join(os.getcwd(), scripts),
casename = casename)
def build_batch_file(self, distrep, casename, coupling=None, cathare_path=None):
"""
Retrieve batch file for the current system
Update batch file for the study
"""
batch_file = os.path.join(distrep, 'runcase')
if sys.platform.startswith('win'):
batch_file = batch_file + '.bat'
if self.copy is not None:
ref_runcase_path = os.path.join(self.copy, 'SCRIPTS', 'runcase')
if sys.platform.startswith('win'):
ref_runcase_path += '.bat'
try:
shutil.copy(ref_runcase_path, batch_file)
except Exception:
pass
# Add info from parent in case of copy
runcase = cs_runcase.runcase(batch_file,
package=self.package,
rebuild=True,
study_name=self.name,
case_name=casename)
if coupling:
runcase.set_coupling(coupling)
# If a cathare LIBPATH is given, it is added to LD_LIBRARY_PATH.
# This modification is needed for the dlopen of the cathare .so file
if cathare_path:
v25_3_line="export v25_3=%s" % cathare_path
new_line="export LD_PATH_LIBRARY=$v25_3/%s/"+":$LD_LIBRARY_PATH"
il=0
for line in runcase.lines:
il+=1
if 'export PATH' in line:
runcase.lines.insert(il, new_line % ("lib/ICoCo"))
runcase.lines.insert(il, new_line % ("lib"))
runcase.lines.insert(il, v25_3_line)
runcase.run_cmd_line_id += 3
break
runcase.save()
def dump(self):
"""
Dump the structure of a study.
"""
print()
print("Name of the study:", self.name)
print("Names of the cases:", self.cases)
if self.copy is not None:
print("Copy from case:", self.copy)
print("Copy references:", self.use_ref)
if self.n_sat > 1:
print("Number of instances:", self.n_sat)
if self.syr_case_names != None:
print("SYRTHES instances:")
for c in self.syr_case_names:
print(" " + c)
if self.ast_case_name != None:
print("Code_Aster instance:", self.ast_case_name)
if self.py_case_name != None:
print("Python script instances:")
for c in self.py_case_name:
print(" " + c)
print()
#-------------------------------------------------------------------------------
# Creation of the study directory
#-------------------------------------------------------------------------------
def main(argv, pkg):
"""
Main function.
"""
welcome = """\
%(name)s %(vers)s study/case generation
"""
study = process_cmd_line(argv, pkg)
if study.verbose > 0:
sys.stdout.write(welcome % {'name':pkg.name, 'vers': pkg.version})
study.create()
if study.verbose > 1:
study.dump()
if __name__ == "__main__":
main(sys.argv[1:], None)
#-------------------------------------------------------------------------------
# End
#-------------------------------------------------------------------------------
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