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|
# -*- coding: utf-8 -*-
#-------------------------------------------------------------------------------
# This file is part of Code_Saturne, a general-purpose CFD tool.
#
# Copyright (C) 1998-2019 EDF S.A.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 51 Franklin
# Street, Fifth Floor, Boston, MA 02110-1301, USA.
#-------------------------------------------------------------------------------
"""
This module defines the XML data model in which the user defines the physical
options of the treated case.
This module contains the following classe:
- XMLinit
- XMLinitTestCase
"""
#-------------------------------------------------------------------------------
# Library modules import
#-------------------------------------------------------------------------------
import sys, unittest, re
#-------------------------------------------------------------------------------
# Application modules import
#-------------------------------------------------------------------------------
from code_saturne.model.Common import *
from code_saturne.model.XMLvariables import Variables
from code_saturne.model.LocalizationModel import Zone, LocalizationModel
from code_saturne.model.OutputControlModel import OutputControlModel
#-------------------------------------------------------------------------------
# Detection of EOS
#-------------------------------------------------------------------------------
EOS = 1
try:
import eosAva
except:
EOS = 0
else :
import eosAva
#-------------------------------------------------------------------------------
# class XMLinitNeptune for neptune_cfd solver
#-------------------------------------------------------------------------------
class XMLinitNeptune(Variables):
"""
This class initializes the XML contents of the case.
"""
def __init__(self, case):
"""
"""
self.case = case
def initialize(self, prepro = False):
"""
Verify that all Headings exist only once in the XMLDocument and
create the missing heading.
"""
msg = self.__initHeading(prepro)
if msg:
return msg
OutputControlModel(self.case).addDefaultWriter()
OutputControlModel(self.case).addDefaultMesh()
if not prepro:
self.__backwardCompatibility()
# Initialization (order is important)
self.XMLNodeAna = self.case.xmlGetNode('analysis_control')
self.XMLNodeAverage = self.XMLNodeAna.xmlInitNode('time_averages')
self.XMLThermo = self.case.xmlGetNode('thermophysical_models')
self.__XMLThermo = self.XMLThermo.xmlInitNode('thermodynamics')
self.XMLNodeVariable = self.XMLThermo.xmlInitNode('variables')
OutputControlModel(self.case).addDefaultWriter()
OutputControlModel(self.case).addDefaultMesh()
self.XMLUserScalar = self.case.xmlGetNode('additional_scalars')
self.XMLUser = self.XMLUserScalar.xmlInitNode('users')
# First Volume Zone definition for all cells -> initialization
zones = LocalizationModel("VolumicZone", self.case).getZones()
iok = 0
for zone in zones:
if zone.getLabel() == 'all_cells':
iok = 1
if iok == 0:
zone = Zone("VolumicZone", case=self.case, label='all_cells', localization='all[]')
LocalizationModel("VolumicZone", self.case).addZone(zone)
zone = LocalizationModel("VolumicZone", self.case).getCodeNumberOfZoneLabel('all_cells')
# If EOS is not avalaible, check if EOS is needed by the current set up.
if EOS == 0:
from code_saturne.model.MainFieldsModel import MainFieldsModel
from code_saturne.model.ThermodynamicsModel import ThermodynamicsModel
for fieldId in MainFieldsModel(self.case).getFieldIdList():
if ThermodynamicsModel(self.case).getMaterials(fieldId) != "user_material":
msg = "The current GUI does not found EOS, but this file of parameters has" \
" been generated with EOS. \n\n Please check the availability of " \
"the prerequisite EOS."
# Initialize fields
if not self.XMLThermo.xmlGetNode('fields'):
from code_saturne.model.MainFieldsModel import MainFieldsModel
MainFieldsModel(self.case).setPredefinedFlow("None")
del MainFieldsModel
return msg
def __initHeading(self, prepro):
"""
Create if necessary headings from the root element of the case.
"""
msg = ""
tagList = ('solution_domain',
'analysis_control',
'calculation_management')
if not prepro :
tagList += ('thermophysical_models',
'additional_scalars',
'closure_modeling',
'boundary_conditions',
'numerical_parameters')
for tag in tagList:
nodeList = self.case.root().xmlInitChildNodeList(tag)
if len(nodeList) > 1:
msg = "There is an error with the use of the initHeading method. " \
"There is more than one occurence of the tag: \n\n" + tag + \
"\n\nThe application will finish. Sorry."
for tag in tagList:
nodeList = self.case.xmlInitNodeList(tag)
if len(nodeList) > 1:
msg = "There is an error with the use of the initHeading method. " \
"There is more than one occurence of the tag: \n\n" + tag + \
"\n\nThe application will finish. Sorry."
return msg
def __backwardCompatibility(self):
"""
Change XML in order to ensure backward compatibility.
"""
if self.case.root()["solver_version"]:
vers = self.case.root()["solver_version"]
history = vers.split(";")
cur_vers = history[len(history) - 1]
if history[len(history) - 1] == self.case['package'].version:
self.__backwardCompatibilityCurrentVersion()
else:
self.__backwardCompatibilityOldVersion(cur_vers)
self.__backwardCompatibilityCurrentVersion()
his = ""
for v in history:
his = his + v + ";"
his = his + self.case['package'].version
self.case.root().xmlSetAttribute(solver_version = his)
else:
vers = self.case['package'].version
self.case.root().xmlSetAttribute(solver_version = vers)
# apply all backwardCompatibility we don't know when it was create
self.__backwardCompatibilityOldVersion("-1")
self.__backwardCompatibilityCurrentVersion()
def __backwardCompatibilityOldVersion(self, from_vers):
"""
Change XML in order to ensure backward compatibility for old version
there is nothing to do for 2.1 to 2.2
"""
if from_vers == "-1":
self.__backwardCompatibilityFrom_2_0()
self.__backwardCompatibilityFrom_2_2()
elif from_vers == "2.0":
self.__backwardCompatibilityFrom_2_0()
self.__backwardCompatibilityFrom_2_2()
elif from_vers == "2.2":
self.__backwardCompatibilityFrom_2_2()
elif from_vers == "4.2":
self.__backwardCompatibilityFrom_4_2()
elif from_vers == "4.4":
self.__backwardCompatibilityFrom_4_4()
def __backwardCompatibilityFrom_2_0(self):
"""
Change XML in order to ensure backward compatibility from 2.0 to 2.1
"""
# time averages
idTA = 0
for Node in self.case.xmlGetNodeList('time_average'):
idTA = idTA + 1
if Node['name'] == None:
Node['name'] = "TimeAverage_" + str(idTA)
# Profiles
for node in self.case.xmlGetNodeList('profile'):
if node:
n = node.xmlGetNode("output_type")
if n == None:
freq = node.xmlGetInt("output_frequency")
if freq == -1:
node.xmlSetData('output_type', "end")
else:
node.xmlSetData('output_type', "frequency")
# Users
nodeInit = self.case.xmlGetNode('users')
if nodeInit:
nodeList = nodeInit.xmlGetNodeList('variable')
for i in range(len(nodeList)):
varNode = nodeList[i]
if varNode['support'] == None:
varNode['support'] = "cells"
# <enthalpy_model field_id="2" model="user_function"/>
for node in self.case.xmlGetNodeList('enthalpy_model'):
if node['model'] == "user_function":
node['model'] = "no_source_term"
nfield = self.case.xmlGetNode('fields')
if nfield != None:
nfield1 = nfield.xmlGetNode('field', field_id="1")
nh = nfield1.xmlGetNode('hresolution')
if nh['status'] == "off":
nodeSurf = self.case.xmlGetNode('property', name='surface_tension')
if nodeSurf == None:
XMLNodethermo = self.case.xmlGetNode('thermophysical_models')
XMLNodeproperty = XMLNodethermo.xmlInitNode('properties')
Variables(self.case).setNewVariableProperty("property", "constant", XMLNodeproperty, "none", "surface_tension", "Surf_tens")
XMLNodeNonCondens = self.case.xmlGetNode('non_condensable_list')
if XMLNodeNonCondens != None:
nodeList = XMLNodeNonCondens.xmlGetNodeList('variable')
for i in range(len(nodeList)):
oldName = "non_condensable" + str(i+1)
newName = "MassFractionNonCondensableGas_" + str(i+1)
for node in self.case.xmlGetNodeList('variable', name = oldName):
if node != None:
node['name'] = newName
# update name for node property
dicoO2N = {"drho_dh" : "d_rho_d_h",
"drho_dP" : "d_rho_d_P",
"Hsat1" : "SaturationEnthalpyLiquid",
"Hsat2" : "SaturationEnthalpyGas",
"TsatK" : "SaturationTemperature",
"DTSDPDerivative" : "d_Tsat_d_P",
"DHSDPDerivativeLiquid" : "d_Hsat_d_P_Liquid",
"DHSDPDerivativeGas" : "d_Hsat_d_P_Gas"}
for node in self.case.xmlGetNodeList('property'):
if node['name'] in dicoO2N.keys():
old_name = node['name']
node['name'] = dicoO2N[old_name]
def __backwardCompatibilityFrom_2_2(self):
"""
Change XML in order to ensure backward compatibility from 2.2 to 2.4-alpha.
"""
for node in self.case.xmlGetNodeList('hresolution'):
if node['model'] == None:
if node['status'] == 'off':
node['model'] = 'off'
else:
node['model'] = 'total_enthalpy'
def __backwardCompatibilityFrom_4_2(self):
"""
Change XML in order to ensure backward compatibility from versions prior to 4.3
Reason: Renaming of wall_temperature as boundary_temperature
"""
# For versions prior to 5.0,renaming of wall_temperature as boundary_temperature
for node in self.case.xmlGetNodeList('property'):
if node['name'] == 'wall_temperature':
node['name'] = 'boundary_temperature'
def __backwardCompatibilityFrom_4_4(self):
# For versions prior to 5.0,renaming of wall_temperature as boundary_temperature
for node in self.case.xmlGetNodeList('property'):
if node['name'] == 'wall_temperature':
node['name'] = 'boundary_temperature'
if node['name'] == 'wall_friction_velocity':
self.case.xmlRemoveChild('property',
name='wall_friction_velocity',
field_id='none')
# Add the choice between SGDH and GGDH turbulent thermal flux models
cnode = self.case.xmlGetNode('closure_modeling')
tnode = cnode.xmlGetNode('turbulence')
thermo_node = self.case.xmlGetNode('thermophysical_models')
fnode = thermo_node.xmlGetNode('fields')
from code_saturne.model.MainFieldsModel import MainFieldsModel
field_names = MainFieldsModel(self.case).getFieldLabelsList()
turb_dico = {'TurbDissip':'epsilon',
'epsilon':'epsilon',
'TurbKineEner_k':'k',
'k':'k',
'turb_viscosity':'turb_viscosity',
'ReynoldsStress':'reynolds_stress'}
rij_comp = {'ReynoldsStressXX':'0',
'ReynoldsStressYY':'1',
'ReynoldsStressZZ':'2',
'ReynoldsStressXY':'3',
'ReynoldsStressYZ':'4',
'ReynoldsStressXZ':'5'}
if tnode != None:
tvn = tnode.xmlGetNode('variables')
for node in tnode.xmlGetNodeList('field'):
if node['turb_flux'] == None:
node['turb_flux'] = 'sgdh'
# Check for missing alpha in the EBRSM model
for node in tnode.xmlGetNodeList('field'):
if node['model'] == 'rij-epsilon_ebrsm':
fid = node['field_id']
na = tvn.xmlGetNode('variable',name='alpha', field_id=fid)
if na == None:
Variables(self.case).setNewVariableProperty("variable", "",
tvn,
fid,
'alpha',
'alpha_'+field_names[int(fid)-1])
# Renaming of Rij tensor
for node in fnode.xmlGetNodeList('field'):
fieldId = node['field_id']
field_name = field_names[int(fieldId)-1]
rn = tvn.xmlGetNode('variable',
name="ReynoldsStressXX",
field_id=fieldId)
if rn != None:
rn['name'] = "reynolds_stress"
rn['label'] = "reynolds_stress_"+field_name
rn['dimension'] = 6
for comp in ["XY", "XZ", "YY", "YZ", "ZZ"]:
tvn.xmlRemoveChild('variable',
name="ReynoldsStress"+comp,
field_id=fieldId)
# Renaming k and espilon
for node in tnode.xmlGetNodeList("variable")+tnode.xmlGetNodeList("property"):
fieldId = node['field_id']
field_name = field_names[int(fieldId)-1]
for tv in turb_dico.keys():
if tv in node['name']:
node['name'] = turb_dico[tv]
node['label'] = turb_dico[tv]+"_"+field_name
# Modify the rad transfer xml node name for particles to allow a correct
# workflow with the RTE SOLVER
tpnode = self.case.xmlGetNode('thermophysical_models')
fnode = tpnode.xmlGetNode('fields')
if fnode != None:
for node in fnode.xmlGetNodeList('field'):
rn = node.xmlGetNode('radiative_transfer')
if rn != None:
st = rn['status']
node.xmlRemoveChild('radiative_transfer')
node.xmlInitChildNode('particles_radiative_transfer', status=st)
# Renaming of Pressure
vnode = thermo_node.xmlGetNode('variables')
pnode = thermo_node.xmlGetNode('properties')
ncnode = thermo_node.xmlGetNode('non_condensable_list')
rdico = {'Enthalpy':'enthalpy',
'enthalpy':'enthalpy',
'Pressure':'pressure',
'pressure':'pressure',
'Velocity':'velocity',
'velocity':'velocity',
'VolumeFraction':'volume_fraction',
'volume_fraction':'volume_fraction',
'Temperature':'temperature',
'temperature':'temperature',
'SaturationEnthalpyLiquid':'SaturationEnthalpyLiquid',
'SaturationEnthalpyGas':'SaturationEnthalpyGas',
'mass_trans':'mass_trans',
'molecular_viscosity':'molecular_viscosity',
'specific_heat':'specific_heat',
'thermal_conductivity':'thermal_conductivity',
'drag_coefficient':'drag_coefficient',
'density':'density',
'Diameter':'diameter',
'diameter':'diameter',
'DriftComponent':'drift_component',
'drift_component':'drift_component',
'emissivity':'emissivity',
'elasticity':'elasticity',
'Xd':'Xd'}
ldico = {'Enthalpy':'Enthalpy',
'enthalpy':'Enthalpy',
'Pressure':'Pressure',
'pressure':'Pressure',
'Velocity':'Velocity',
'velocity':'Velocity',
'VolumeFraction':'vol_f',
'volume_fraction':'vol_f',
'Temperature':'temp',
'temperature':'temp',
'SaturationEnthalpyLiquid':'HsatLiquid',
'SaturationEnthalpyGas':'HsatGas',
'mass_trans':'mass_trans',
'molecular_viscosity':'molecular_viscosity',
'specific_heat':'specific_heat',
'thermal_conductivity':'thermal_conductivity',
'drag_coefficient':'drag_coef',
'density':'density',
'Diameter':'diameter',
'diameter':'diameter',
'DriftComponent':'drift_component',
'drift_component':'drift_component',
'emissivity':'emissivity',
'elasticity':'elasticity',
'Xd':'Xd'}
for ii in range(20):
rdico['MassFractionNonCondensableGas_'+str(ii)]='mass_fraction_non_condensable_gas_'+str(ii)
rdico['mass_fraction_non_condensable_gas_'+str(ii)]='mass_fraction_non_condensable_gas_'+str(ii)
ldico['MassFractionNonCondensableGas_'+str(ii)]='mass_fraction_non_condensable_gas_'+str(ii)
ldico['mass_fraction_non_condensable_gas_'+str(ii)]='mass_fraction_non_condensable_gas_'+str(ii)
old_mei_names = {'VolumeFraction':['alpha','vol_f'],
'volume_fraction':['alpha','vol_f']}
if ncnode != None:
for node in ncnode.xmlGetNodeList('variable'):
ncname = node['name']
if 'MassFractionNonCondensableGas' in ncname:
node['name'] = ncname.replace('MassFractionNonCondensableGas',
'mass_fraction_non_condensable_gas')
if vnode != None:
for node in vnode.xmlGetNodeList('variable'):
vname = node['name']
if vname in rdico.keys():
node['name'] = rdico[vname]
field_id = node['field_id']
if field_id == 'none':
label = ldico[vname]
else:
label = ldico[vname] + '_' + field_names[int(field_id)-1]
node['label'] = label
for nzi in node.xmlGetNodeList('initial_value'):
nf = nzi.xmlGetNode('formula')
if nf != None:
f = nzi.xmlGetString('formula')
if vname in old_mei_names.keys():
n2r = old_mei_names[vname][0]
n2a = old_mei_names[vname][1]
else:
n2r = vname
n2a = rdico[vname]
nf.xmlSetTextNode(f.replace(n2r, n2a))
bcnode = self.case.xmlGetNode('boundary_conditions')
bc_list = ['inlet', 'wall', 'outlet']
for bc_type in bc_list:
for nb in bcnode.xmlGetNodeList(bc_type):
for nv in nb.xmlGetNodeList('variable'):
if nv['name'] in rdico.keys():
nv['name'] = rdico[nv['name']]
if pnode != None:
for node in pnode.xmlGetNodeList('property'):
pname = node['name']
if pname in rdico.keys():
node['name'] = rdico[pname]
field_id = node['field_id']
if field_id == 'none':
label = ldico[pname]
else:
label = ldico[pname] + '_' + field_names[int(field_id)-1]
node['label'] = label
# User arrays should be properties, not scalars
XMLUserScalar = self.case.xmlGetNode('additional_scalars')
if XMLUserScalar:
XMLUser = XMLUserScalar.xmlInitNode('users')
if XMLUser:
for node in XMLUser.xmlGetNodeList('variable'):
newnode = XMLUser.xmlInitNode('property', name=node['name'])
newnode.xmlChildsCopy(node)
for tag in ('dimension', 'field_id', 'label', 'support'):
if node[tag]:
newnode[tag] = node[tag]
node.xmlRemoveNode()
# Rename variable names in time averages and profile
for pp_type in ('time_average', 'profile'):
for node in self.case.xmlGetNodeList(pp_type):
for vn in node.xmlGetNodeList('var_prop'):
vn_split = vn['name'].split('_')
old_name = vn['name'].split('_')[0]
if len(vn_split) > 1:
field_id = vn['name'].split('_')[1]
else:
field_id = None
if old_name in rdico.keys():
vn['name'] = rdico[old_name]
if field_id:
vn['name'] += '_' + field_id
elif old_name in rij_comp.keys():
vn['component'] = rij_comp[old_name]
vn['name'] = 'reynolds_stress_'
if field_id:
vn['name'] += field_id
elif old_name in turb_dico.keys():
vn['name'] = turb_dico[old_name]
if field_id:
vn['name'] += '_' + field_id
elif bool(re.search('MassFractionNonCondensableGas', old_name)):
vn['name'] = vn['name'].replace('MassFractionNonCondensableGas',
'mass_fraction_non_condensable_gas')
def __backwardCompatibilityCurrentVersion(self):
"""
Change XML in order to ensure backward compatibility.
"""
# Retrocompatibility: the use of probes in neptune is now the same as for saturn
for variableType in ('variable', 'property', 'scalar', 'time_average') :
for parent in self.case.xmlGetNodeList(variableType):
parent.xmlRemoveChild('probe_recording')
if parent.xmlGetNode('no_probe') != None :
parent.xmlRemoveChild('no_probe')
probes_recording = parent.xmlInitNode('probes_recording', 'status')
probes_recording['status'] = 'off'
timelst = []
timetup = {}
for node in self.case.xmlGetNodeList('time_average'):
if node:
time_node = node.xmlGetNode("time_start")
if not time_node:
node.xmlSetData('time_start', -1.)
# construc map for profiles
if node['name']:
timetup[node['name']] = node['label']
timelst.append(node['name'])
# now name = label
node['name'] = node['label']
if node['field_id'] == "None":
node['field_id'] = "none"
if not node['name']:
node['name'] = node['label']
for nodevar in node.xmlGetNodeList('var_prop'):
name = nodevar['name']
if nodevar['field_id'] and nodevar['field_id'] != "none":
name += '_' + nodevar['field_id']
component = nodevar['component']
nodevar.xmlRemoveNode()
newnode = node.xmlInitNode('var_prop', name=name)
if component:
newnode['component'] = component
for node in self.case.xmlGetNodeList('profile'):
if node:
for nodevar in node.xmlGetNodeList('var_prop'):
if nodevar['name'] in timelst:
nodevar['name'] = timetup[nodevar['name']]
name = nodevar['name']
if nodevar['field_id'] and nodevar['field_id'] != "none":
name += '_' + nodevar['field_id']
component = nodevar['component']
nodevar.xmlRemoveNode()
if component:
newnode = node.xmlInitNode('var_prop',
name=name,
component=component)
else:
newnode = node.xmlInitNode('var_prop', name=name)
# suppress gradient and flux reconstruction if needed
for node in self.case.xmlGetNodeList('variable'):
n = node.xmlGetNode('flux_reconstruction')
if n:
node.xmlRemoveChild('flux_reconstruction')
n = node.xmlGetNode('gradient_reconstruction')
if n:
node.xmlRemoveChild('gradient_reconstruction')
# update for cdudn
self.XMLNodethermo = self.case.xmlGetNode('thermophysical_models')
self.__XMLNodefields = self.XMLNodethermo.xmlInitNode('fields')
for node in self.__XMLNodefields.xmlGetNodeList('field'):
fieldId = node['field_id']
XMLWallNode = node.xmlGetNode('wall_model')
if XMLWallNode:
mdl = XMLWallNode['model']
node.xmlRemoveChild('wall_model')
for n in self.case.xmlGetNodeList('wall'):
n.xmlInitChildNode('wall_model', field_id = fieldId, model = mdl)
# ------------------------------------------------------------
# FIXME: TO REMOVE ONCE NCFD 5.0 is out!
# For versions prior to 5.0,renaming of wall_temperature as boundary_temperature
self.__backwardCompatibilityFrom_4_4()
#-------------------------------------------------------------------------------
# XMLinit test case
#-------------------------------------------------------------------------------
class XMLinitTestCaseNeptune(unittest.TestCase):
"""
"""
def setUp(self):
"""
This method is executed before all "check" methods.
"""
from code_saturne.Base import XMLengine
GuiParam.lang = 'en'
self.doc = XMLengine.XMLDocument("")
self.case = XMLengine.Case(None)
def tearDown(self):
"""
This method is executed after all "check" methods.
"""
del self.case
del self.doc
def xmlNodeFromString(self, string):
"""Private method to return a xml node from string"""
return self.doc.parseString(string).root()
def checkXMLinitInstantiation(self):
"""
Check whether the Case class could be instantiated
"""
xmldoc = None
xmldoc = XMLinit(self.case)
assert xmldoc != None, 'Could not instantiate XMLinit'
def checkInitHeading(self):
"""
Check whether the headings markups could be initialized
"""
XMLinit(self.case)
assert self.case.root() == self.xmlNodeFromString(doc), \
'Could not use the constructor of the XMLinit class'
def suite():
testSuite = unittest.makeSuite(XMLinitTestCase, "check")
return testSuite
def runTest():
print("XMLinitTestCase to be completed...")
runner = unittest.TextTestRunner()
runner.run(suite())
#-------------------------------------------------------------------------------
# End of XMLinit
#-------------------------------------------------------------------------------
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