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#!/usr/bin/env python3
#-------------------------------------------------------------------------------
# This file is part of Code_Saturne, a general-purpose CFD tool.
#
# Copyright (C) 1998-2021 EDF S.A.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 51 Franklin
# Street, Fifth Floor, Boston, MA 02110-1301, USA.
#-------------------------------------------------------------------------------
"""
Update XML file with common parametric arguments.
"""
import os, sys
from argparse import ArgumentParser
#-------------------------------------------------------------------------------
# Process the command line
#-------------------------------------------------------------------------------
def arg_parser(argv):
"""
Build argument parser for command line arguments.
"""
parser = ArgumentParser(description="Filter a case setup model.")
parser.add_argument("--notebook", "--nb", dest="notebook", type=str,
action="append",
metavar="<var>:<val>",
help="Notebook parameters.")
parser.add_argument("-m", "--mesh", dest="mesh", type=str,
action="append",
help="Name of the new mesh")
parser.add_argument("--mi", "--mesh_input", dest="mesh_input", type=str,
help="Name of the new mesh_input")
parser.add_argument("-a", "--perio-angle", dest="rotationAngle", type=float,
help="Periodicity angle")
parser.add_argument("-r", "--restart", dest="RestartRun", type=str,
help="Run to restart from (in same case)")
parser.add_argument("-n", "--iter-num", dest="iterationsNumber", type=int,
help="New iteration number")
parser.add_argument("--tmax", dest="tmax", type=float,
help="Time based stop criterion")
parser.add_argument("--iter-dt", dest="TimeStep", type=float,
help="New time step")
parser.add_argument("-u", "--unsteady", dest="TimeModel", action="store_true",
help="Unsteady time model (steady by default)")
parser.add_argument("--imrgra", dest="imrgra", type=int,
help="Gradient reconstruction")
parser.add_argument("--blencv", dest="blencv", type=str, nargs='*',
metavar="<var>:<val>",
help="Blencv")
parser.add_argument("--update-bc-criteria", dest="bc_criteria",
type=str, action="append",
metavar="<bc_label>:<selection_criteria>",
help="Update boundary zone selection criteria.")
return parser
#-------------------------------------------------------------------------------
# Class which provides a set of predefined methods to modify a
# code_saturne xml file
#-------------------------------------------------------------------------------
class case_setup_filter(object):
"""
Class to modify a Code_Saturne xml file
"""
#---------------------------------------------------------------------------
def __init__(self, case=None, pkg=None):
"""
Constructor.
@param case: XML case object
@param pkg: package
"""
# package
self.pkg = None
if pkg:
self.pkg = pkg
else:
from code_saturne.cs_package import package
self.pkg = package()
from code_saturne.model.XMLengine import Case
self.case = case
self.outputModel = None
self.bcModel = None
self.bndModel = None
self.restartModel = None
self.timeStepModel = None
self.meshModel = None
self.notebookModel = None
self.numParamModel = None
self.numParamEquationModel = None
#---------------------------------------------------------------------------
def initMeshModel(self):
"""
Initialize the SolutionDomainModel
"""
if self.meshModel == None:
from code_saturne.model.SolutionDomainModel import SolutionDomainModel
self.meshModel = SolutionDomainModel(self.case)
#---------------------------------------------------------------------------
def initOutputModel(self):
"""
Method to initialize the outputModel data structure which handles
output parameters including monitoring points
"""
if self.outputModel == None:
from code_saturne.model.OutputControlModel import OutputControlModel
self.outputModel = OutputControlModel(self.case)
#---------------------------------------------------------------------------
def initBcModel(self):
"""
Initialize the BC model
"""
if self.bcModel == None:
from code_saturne.model.LocalizationModel import LocalizationModel
self.bcModel = LocalizationModel("BoundaryZone", self.case)
#---------------------------------------------------------------------------
def initBndModel(self):
"""
Initialize the boundary model.
"""
if self.bndModel == None:
from code_saturne.model.Boundary import Boundary
self.bndModel = Boundary
#---------------------------------------------------------------------------
def initRestartModel(self):
"""
Initialize the restart model
"""
if self.restartModel == None:
from code_saturne.model.StartRestartModel import StartRestartModel
self.restartModel = StartRestartModel(self.case)
#---------------------------------------------------------------------------
def initTimeStepModel(self):
"""
Initialize the time step model.
"""
if self.timeStepModel == None:
from code_saturne.model.TimeStepModel import TimeStepModel
self.timeStepModel = TimeStepModel(self.case)
#---------------------------------------------------------------------------
def initNotebookModel(self):
"""
Initialize the notebook model.
"""
if self.notebookModel == None:
from code_saturne.model.NotebookModel import NotebookModel
self.notebookModel = NotebookModel(self.case)
#---------------------------------------------------------------------------
def initNumParamModel(self):
"""
Initialize the numerical parameters model
"""
if self.numParamModel == None:
from code_saturne.model.NumericalParamGlobalModel import NumericalParamGlobalModel
self.numParamModel = NumericalParamGlobalModel(self.case)
#---------------------------------------------------------------------------
def initNumParamEquationModel(self):
"""
Initialize the numerical parameters equation model
"""
if self.numParamEquationModel == None:
from code_saturne.model.NumericalParamEquationModel import NumericalParamEquationModel
self.numParamEquationModel = NumericalParamEquationModel(self.case)
#---------------------------------------------------------------------------
def cleanMeshList(self):
"""
Empty mesh list.
"""
self.initMeshModel()
for m in self.meshModel.getMeshList():
self.meshModel.delMesh(m)
#---------------------------------------------------------------------------
def addMesh(self, mesh, path=None):
"""
Add a mesh to the xml file.
@param mesh : name of the mesh file
@param path : path to the mesh file if file is not in MESH folder.
"""
self.initMeshModel()
self.meshModel.addMesh((mesh, path))
#---------------------------------------------------------------------------
def setMeshInput(self, mesh_input):
"""
Define a mesh input as mesh to use.
@param mesh_input : name/path of mesh_input file
"""
self.initMeshModel()
self.cleanMeshList()
self.meshModel.setMeshInput(mesh_input)
#---------------------------------------------------------------------------
def rotateMesh(self, rotationAngle):
"""
Define a mesh rotation operation
@param rotationAngle : angle of rotation.
"""
self.initMeshModel()
self.meshModel.setRotationAngle(0, rotationAngle)
#---------------------------------------------------------------------------
def defineProbesFromCSV(self, probes_file):
"""
Method to add probes based on a csv file
@param probes_file: file containing the coordinates of the probes
to add.
"""
self.initOutputModel()
self.outputModel.ImportProbesFromCSV(probes_file)
#---------------------------------------------------------------------------
def defineProbeFromCoordinates(self, x, y, z):
"""
Add a probe using coordinates.
@param x: first coordinate
@param y: second coordinate
@param z: third coordinate
"""
self.initOutputModel()
self.outputModel.addMonitoringPoint(x, y, z)
#---------------------------------------------------------------------------
def removeExistingProbes(self):
"""
Remove all existing probes in an xml file
"""
self.initOutputModel()
nProbes = self.outputModel.getNumberOfMonitoringPoints()
for i in range(nProbes):
self.outputModel.deleteMonitoringPoint(str(nProbes-i))
#---------------------------------------------------------------------------
def setProbesFrequency(self, time_freq=None, iter_freq=None):
"""
Modify the output frequency of monitoring points.
@param time_freq: set physical time frequency in [s]
@param iter_freq: set iteration frequency in [iter]
"""
if time_freq and iter_freq:
raise Exception("You cannot define both time and iteration frequency")
elif time_freq:
self.outputModel.setMonitoringPointType('Frequency_h_x')
self.outputModel.setMonitoringPointFrequencyTime(time_freq)
elif iter_freq:
self.outputModel.setMonitoringPointType('Frequency_h')
self.outputModel.setMonitoringPointFrequency(iter_freq)
else:
raise Exception("You provided no frequency")
#---------------------------------------------------------------------------
def setBcType(self, bc_label, new_type):
"""
Set boundary condition type.
@param bc_label: name of the boundary condition
@param new_type: boundary condition type.
Examples: 'inlet', 'wall'
"""
self.initBcModel()
self.bcModel.setNature(bc_label, new_type)
#---------------------------------------------------------------------------
def setBcLocalization(self, bc_label, localization):
"""
Set selection criteria for the boundary definition.
@param bc_label: name of the boundary condition.
@param localization : selection criteria.
"""
self.initBcModel()
self.bcModel.setLocalization(bc_label, localization)
#---------------------------------------------------------------------------
def getBoundary(self, bc_label, bc_type):
"""
Get boundary object based on name and type.
@param bc_label: name of the boundary condition
@param bc_type : boundary condition type (inlet, wall)
"""
self.initBndModel()
bnd = self.bndModel(bc_type, bc_label, self.case)
return bnd
#---------------------------------------------------------------------------
def setInletVelocity(self, bc_label, vel):
"""
Set velocity value on an inlet.
@param bc_label: name of the boundary condition
@param vel : value to set
"""
bnd = self.getBoundary(bc_label, "inlet")
bnd.setVelocityChoice("norm")
bnd.setVelocity(vel)
bnd.setDirectionChoice("normal")
pass
#---------------------------------------------------------------------------
def setInletScalar(self, bc_label, scalar_name, val):
"""
Set scalar injection value on an inlet
@param bc_label : name of the boundary condition
@param scalar_name: scalar name
@param val : value to set
"""
bnd = self.getBoundary(bc_label, "inlet")
bnd.setScalarChoice(scalar_name, "dirichlet")
bnd.setScalarValue(scalar_name, "dirichlet", val)
pass
#---------------------------------------------------------------------------
def setRestartPath(self, checkpoint_path):
"""
Set restart path in xml file.
@param path: path to checkpoint folder
"""
self.initRestartModel()
self.restartModel.setRestartPath(checkpoint_path)
_mp = os.path.join(checkpoint_path, 'mesh_input.csm')
self.restartModel.setRestartMeshPath(_mp)
pass
#---------------------------------------------------------------------------
def removeRestartPath(self):
"""
Remove restart option from xml file
"""
self.initRestartModel()
self.restartModel.setRestartPath(None)
self.restartModel.setRestartMeshPath(None)
pass
#---------------------------------------------------------------------------
def setTimeIterationsNumber(self, n_iter):
"""
Set simulation stop criterion to a given number of iterations.
@param n_iter: number of iterations to compute.
"""
self.initTimeStepModel()
self.timeStepModel.setStopCriterion('iterations_add', n_iter)
#---------------------------------------------------------------------------
def setMaxTime(self, t_max):
"""
Set simulation stop criterion to a given physical time.
@param t_max: physical time to achieve.
"""
self.initTimeStepModel()
self.timeStepModel.setStopCriterion('maximum_time', t_max)
#---------------------------------------------------------------------------
def setTimeStep(self, dt):
"""
Set the computation time step value.
@param dt: time step value
"""
self.initTimeStepModel()
self.timeStepModel.setTimeStep(dt)
#---------------------------------------------------------------------------
def setUnsteadySimulation(self):
"""
Define unsteady simulation.
"""
self.initTimeStepModel()
self.timeStepModel.setTimePassing(0)
#---------------------------------------------------------------------------
def changeNotebookParameter(self, name, val):
"""
Change the value of a notebook parameter.
@param name : name of the parameter
@param val : new value to assign
"""
self.initNotebookModel()
if name not in self.notebookModel.getVarNameList():
raise Exception("%s is not in the notebook!" % name)
self.notebookModel.setVariableValue(val=val, var=name)
#---------------------------------------------------------------------------
def setGradientReconstruction(self, imrgra):
"""
Set gradient reconstruction method.
@param imrgra : Method indicator (int)
"""
self.initNumParamModel()
self.numParamModel.setGradientReconstruction(imrgra)
#---------------------------------------------------------------------------
def setBlendingFactor(self, varName, blencv):
"""
Set the blending factor for a given variable.
@param varName : name of the variable
@param blencv : Blending factor value
"""
self.initNumParamEquationModel()
self.numParamEquationModel.setBlendingFactor(varName, blencv)
#---------------------------------------------------------------------------
def find_nearest_checkpoint(self, search_path, restart_time):
"""
Find inside a checkpoint folder the restart file which time
is closest (and smaller) to a given value.
@param search_path : path to checkpoint folder
@param restart_time: restart time which is sought for
"""
from code_saturne.model.StartRestartModel import getRestartInfo
from glob import glob
# Check where we are before launching
origin = os.getcwd()
# Go to case folder
os.chdir(search_path)
# Get list of available checkpoints
spaths = glob("previous_dump_*")
spaths.sort()
spaths.append(".")
# initialize delta and closest checkpoint
delta = 100000000000.0
checkpoint = None
# Loop on all checkpoint dumps looking for closest dump done with a time
# less or equal to the wished restart time
for p in spaths:
ret = getRestartInfo(package=self.pkg, restart_path=p)
time_p = ret[2]
if time_p <= restart_time:
dt = restart_time - time_p
if dt < delta:
checkpoint = p
delta = dt
# Return path to the found checkpoint. None if none found
restart_checkpoint = None
if checkpoint:
restart_checkpoint = os.path.join(search_path, checkpoint)
os.chdir(origin)
return restart_checkpoint
#-------------------------------------------------------------------------------
# Function which will update case in memory based on the case_setup_filter class
#-------------------------------------------------------------------------------
def update_case_model(case, options, pkg):
"""
Update a Case model in memory with given options
"""
xml_controller = case_setup_filter(case, pkg=pkg)
# Mesh parameters
# ---------------
if options.mesh:
xml_controller.cleanMeshList()
for m in options.mesh:
xml_controller.addMesh(m, None)
if options.mesh_input:
xml_controller.setMeshInput(options.mesh_input)
if options.rotationAngle:
xml_controller.rotateMesh(options.rotationAngle)
# Boundary conditions parameters
# ------------------------------
if options.bc_criteria:
for bc in options.bc_criteria:
bc_label, bc_criteria = bc.split(':')
xml_controller.setBcLocalization(bc_label, bc_criteria)
# Time parameters
# ---------------
if options.iterationsNumber:
xml_controller.setTimeIterationsNumber(options.iterationsNumber)
if options.tmax:
xml_controller.setMaxTime(options.tmax)
if options.TimeStep:
xml_controller.setTimeStep(options.TimeStep)
if options.TimeModel:
xml_controller.setUnsteadySimulation()
# Numerical parameters
# --------------------
if options.imrgra:
xml_controller.setGradientReconstruction(options.imrgra)
if options.blencv:
for elt in options.blencv:
fname, factor_str = elt.split(':')
factor = float(factor_str)
xml_controller.setBlendingFactor(fname, factor)
# Notebook
# --------
if options.notebook:
for var in options.notebook:
vname, value = var.split(':')
xml_controller.changeNotebookParameter(vname, value)
# Restart parameters
# ------------------
if options.RestartRun:
restart_path = os.path.join('RESU', options.RestartRun, 'checkpoint')
xml_controller.setRestartPath(restart_path)
#-------------------------------------------------------------------------------
# Main function which modifies the case setup based on given argument list
#-------------------------------------------------------------------------------
def update_case_setup(case, args, pkg):
# Read input arguments
# --------------------
if args == []:
args.append("--help")
parser = arg_parser(args)
(options, rargs) = parser.parse_known_args(args)
if rargs:
print("cs_parametric_setup: unknown arguments", rargs)
print("-------------------")
if case:
xml_controller = case_setup_filter(case, pkg=pkg)
update_case_model(xml_controller.case, options, pkg)
else:
print("parsed options:", options)
#-------------------------------------------------------------------------------
if __name__ == '__main__':
retval = update_case_setup(argv=sys.argv[1:])
sys.exit(retval)
#-------------------------------------------------------------------------------
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