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#!/bin/bash
set -e
pkg=codonw
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
gunzip -r *
echo 'Test 1'
codonw input.dat -all_indices -human -c_type 2 -f_type 4 -nomenu -silent
echo 'PASS'
echo 'Test 2'
codonw input.dat -coa_cu -nomenu -silent
echo 'PASS'
echo 'Test 3'
codonw input.dat -fop_file fop.coa -nomenu -silent
echo 'PASS'
echo 'Test 4'
codonw input.dat -cai_file cai.coa -cbi_file cbi.coa -nomenu -silent
echo 'PASS'
echo 'Test 5'
codonw input.dat -all_indices -nomenu -silent
echo 'PASS'
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