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/*
Copyright 2015 University of Washington
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
*/
// CometWrapper.h
#pragma once
#include "Common.h"
#include "CometDataWrapper.h"
#include "CometInterfaces.h"
#include <msclr/marshal.h>
using namespace System;
using namespace System::Collections::Generic;
using namespace msclr::interop;
using namespace CometInterfaces;
namespace CometWrapper {
public ref class CometSearchManagerWrapper
{
public:
CometSearchManagerWrapper();
virtual ~CometSearchManagerWrapper();
bool DoSearch();
// Need to convert vector to List and back
bool AddInputFiles(List<InputFileInfoWrapper^> ^inputFilesList);
bool SetOutputFileBaseName(String^ baseName);
bool SetParam(String^ name, String^ strValue, String^ value);
bool GetParamValue(String^ name, String^% value);
bool SetParam(String^ name, String^ strValue, int value);
bool GetParamValue(String^ name, int %value);
bool SetParam(String^ name, String^ strValue, double value);
bool GetParamValue(String^ name, double% value);
bool SetParam(String^ name, String^ strValue, IntRangeWrapper^ value);
bool GetParamValue(String^ name, IntRangeWrapper^% value);
bool SetParam(String^ name, String^ strValue, DoubleRangeWrapper^ value);
bool GetParamValue(String^ name, DoubleRangeWrapper^% value);
bool SetParam(String^ name, String^ strValue, VarModsWrapper^ value);
bool GetParamValue(String^ name, VarModsWrapper^% value);
bool SetParam(String^ name, String^ strValue, EnzymeInfoWrapper^ value);
bool GetParamValue(String^ name, EnzymeInfoWrapper^% value);
bool SetParam(String^ name, String^ strValue, List<double>^ value);
bool GetParamValue(String^ name, List<double>^% value);
bool ValidateCometVersion(String^ version, bool% isValid);
bool IsSearchError(bool% bError);
bool GetStatusMessage(String^% strStatusMsg);
bool CancelSearch();
bool IsCancelSearch(bool% bCancel);
bool ResetSearchStatus();
private:
ICometSearchManager *_pSearchMgr;
msclr::interop::marshal_context _marshalContext;
vector<InputFileInfo*>* _pvInputFilesList;
};
}
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