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Author: Laszlo Kajan <lkajan@rostlab.org>
Description: fix compiler errors and warnings
Forwarded: http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-September/017323.html
Forwarded-Comment: Upstream was bcc'd on forwarded email.
--- a/pkgs/PDB/PDBFile.C
+++ b/pkgs/PDB/PDBFile.C
@@ -396,7 +396,7 @@
{
// Write all header lines
for (int i = 0; i < headers.NEntries(); i++) {
- fprintf(fp, headers.Kth(i));
+ fprintf(fp, "%s", headers.Kth(i));
}
// Write all models
@@ -444,7 +444,7 @@
// Write all trailing lines
for (int i = 0; i < trailers.NEntries(); i++) {
- fprintf(fp, trailers.Kth(i));
+ fprintf(fp, "%s", trailers.Kth(i));
}
// Return number of models written
@@ -1355,7 +1355,7 @@
}
// Check jsd files for chain A if chain name is "-" or " " ???
- if (translate_unnamed_chains && !strcmp(chain_name, "-") || !strcmp(chain_name, " ")) {
+ if (translate_unnamed_chains && ( !strcmp(chain_name, "-") || !strcmp(chain_name, " ") ) ) {
// Get chain jsd filename
strcpy(chain_filename, jsd_basename);
strcat(chain_filename, "_");
--- a/pkgs/R3Shapes/R3Grid.C
+++ b/pkgs/R3Shapes/R3Grid.C
@@ -2151,7 +2151,7 @@
}
// Read toplbl from file
- char toplbl[32];
+ char toplbl[64];
if (fread(toplbl, sizeof(char), 60, fp) != 60) {
RNFail("Unable to read toplbl from delphi file: %s\n", filename);
return 0;
--- a/pkgs/R3Shapes/R3Triangle.C
+++ b/pkgs/R3Shapes/R3Triangle.C
@@ -254,7 +254,7 @@
RNLength length = 0.0;
length += R3Distance(v[0]->Position(), v[1]->Position());
length += R3Distance(v[1]->Position(), v[2]->Position());
- length += R3Distance(v[2]->Position(), v[3]->Position());
+ length += R3Distance(v[2]->Position(), v[0]->Position());
return length;
}
--- a/pkgs/PDB/PDBUtil.C
+++ b/pkgs/PDB/PDBUtil.C
@@ -161,7 +161,7 @@
}
#else
// Count atoms on each side of axes for each element type
- RNScalar sum[3][6] = { 0 };
+ RNScalar sum[3][6] = { { 0 } };
for (int a = 0; a < atoms.NEntries(); a++) {
PDBAtom *atom = atoms[a];
PDBElement *element = atom->Element();
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