1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
|
#ifndef __STUDY_META_DATA_LINK_SET_H__
#define __STUDY_META_DATA_LINK_SET_H__
/*LICENSE_START*/
/*
* Copyright (C) 2014 Washington University School of Medicine
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along
* with this program; if not, write to the Free Software Foundation, Inc.,
* 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
*/
/*LICENSE_END*/
#include <vector>
#include "CaretObject.h"
#include "StudyMetaDataLink.h"
#include "XmlException.h"
namespace caret {
class XmlWriter;
/// class for accessing and storing a group of StudyMetaDataLink
class StudyMetaDataLinkSet : public CaretObject {
public:
// constructor
StudyMetaDataLinkSet();
// destructor
~StudyMetaDataLinkSet();
// add a StudyMetaDataLink
void addStudyMetaDataLink(const StudyMetaDataLink& smdl);
// remove all links
void clear();
/// get the number of study meta data links
int getNumberOfStudyMetaDataLinks() const { return m_links.size(); }
// get a StudyMetaDataLink
StudyMetaDataLink getStudyMetaDataLink(const int indx) const;
// get a pointer to a StudyMetaDataLink
StudyMetaDataLink* getStudyMetaDataLinkPointer(const int indx);
// get all linked PubMed IDs
void getAllLinkedPubMedIDs(std::vector<AString>& pmidsOut) const;
// remove a study meta data link
void removeStudyMetaDataLink(const int indx);
// set a study meta data link
void setStudyMetaDataLink(const int indx, const StudyMetaDataLink& smdl);
/// get the entire link set in an "coded" text form
AString getLinkSetAsCodedText() const;
/// set the link set from "coded" text form
void setLinkSetFromCodedText(const AString& txt);
// called to write XML
void writeXML(XmlWriter& xmlWriter) const throw (XmlException);
//
//----- tags for reading and writing
//
/// tag for reading and writing study metadata
static const AString XML_TAG_STUDY_META_DATA_LINK_SET;
/// get the link separator for when stored as a string
static const AString encodedTextLinkSeparator;
protected:
/// the StudyMetaDataLink
std::vector<StudyMetaDataLink> m_links;
friend class CellBase;
};
#ifdef __STUDY_META_DATA_LINK_SET_MAIN__
const AString StudyMetaDataLinkSet::XML_TAG_STUDY_META_DATA_LINK_SET = "StudyMetaDataLinkSet";
const AString StudyMetaDataLinkSet::encodedTextLinkSeparator = ":::::";
#endif // __STUDY_META_DATA_LINK_SET_MAIN__
} // namespace
#endif // __STUDY_META_DATA_LINK_SET_H__
|
