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.. _external-index:
=======================================
Overview of included external libraries
=======================================
.. warning:: This content is deprecated.
.. note: Remember to update the .gitignore in the root folder not to include the git repositories.
Maybe one could use also git `submodules <http://www.kernel.org/pub/software/scm/git/docs/user-manual.html#submodules>`_ ?
''Criteria to decide whether a package is included here or as a dependency:''
* Does the library add benefits for the neuroimaging researcher?
* Is the package included in an up-to-date Ubuntu package?
* What are the dependencies of the library?
* Has the author of the library agreed to include it?
* Has the library an open license (e.g. BSD, GPL, LGPL, MIT)?
* Is it easy to include the library in terms of installation, e.g. by numpy.distutils recursive
scheme?
* Add it as standalone repository, symbolic link to a repository, or frozen released version?
(How to automate the update procedure?)
* If the library is not available as Ubuntu package or via PyPi, this indicates that the packaging and distribution
is not mature enough (?)
joblib
------
Description : Joblib is a set of tools to provide lightweight pipelining in Python.
URL : `http://packages.python.org/joblib/`_
Dev-URL : `http://github.com/joblib/joblib`_
Copyright : Copyright (c) 2009-2010, Gael Varoquaux
License : BSD-licensed
Dependency : NumPy
Current version : 0.4.1
PyEEG
-----
Description : PyEEG, a Python module to extract EEG features, v 0.01b
Copyleft : 2009 Forrest Sheng Bao
URL : `http://code.google.com/p/pyeeg/`_
License : GPL v3
Current version : 0.01_r4
tomoviz
-------
Description : Mayavi 4D Visualization for large datasets
URL : http://github.com/emmanuelle/tomoviz
License : new BSD
PyXNAT
------
URL : `http://packages.python.org/pyxnat/`
OpenMEEG
--------
URL : `http://www-sop.inria.fr/odyssee/software/OpenMEEG/`_
Parallel Python
---------------
URL : `http://www.parallelpython.com`_
PyConTo
-------
Python Connectome Toolbox
* Includes Brain Connectivity Toolbox Python Wrappers
* Network based statistics for case-control, task-control studies
* Wrapper for CSSR, Spectral Graph Toolbox
* Hierarchical Community Detection
pbrain
------
???, is included in nipy
URL : `http://github.com/nipy/pbrain`_
pytables
--------
URL : `http://www.pytables.org/moin`_
Dependency : Numexpr
nipy
----
nitime
------
nibabel
-------
dipy
----
Diffusion Imaging in Python
Fos
---
Scientific 3D Visualization
nipype
------
xipy
----
cfflib
------
python-statlib
--------------
`http://code.google.com/p/python-statlib/wiki/PstatDoc`_
NamedAxis
---------
By Fernando Perez `<http://github.com/fperez/datarray>`_
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