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// Author: David Alexander
//
// Linear-space basic alignment following Hirschberg
//
#pragma once
#include <string>
#include <ConsensusCore/Align/PairwiseAlignment.hpp>
namespace ConsensusCore {
class PairwiseAlignment;
PairwiseAlignment* AlignLinear(const std::string& target, const std::string& query,
AlignConfig config = AlignConfig::Default());
PairwiseAlignment* AlignLinear(const std::string& target, const std::string& query, int* score,
AlignConfig config = AlignConfig::Default());
}
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