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// Author: David Alexander
#pragma once
#include <utility>
#include <vector>
#include <ConsensusCore/Interval.hpp>
#include <ConsensusCore/Types.hpp>
namespace ConsensusCore {
// These APIs are a little more awkward than I'd have liked---see
// "winLen" instead of winEnd. Had to contort a bit to get SWIG
// bindings working well.
void CoverageInWindow(int tStartDim, int* tStart, int tEndDim, int* tEnd, int winStart, int winLen,
int* coverage);
std::vector<Interval> CoveredIntervals(int minCoverage, int tStartDim, int* tStart, int tEndDim,
int* tEnd, int winStart, int winLen);
}
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